RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 GAGE7O76087 117 aa5.4□□□□□ -1.54
COL6A3-208ENST00000468792 GAGE12FP0CL80 117 aa5.4□□□□□ -1.54
COL6A3-208ENST00000468792 GAGE12GP0CL81 117 aa5.4□□□□□ -1.54
COL6A3-208ENST00000468792 GAGE12IP0CL82 117 aa5.4□□□□□ -1.54
COL6A3-208ENST00000468792 SMIM13P0DJ93 91 aa5.4□□□□□ -1.54
COL6A3-208ENST00000468792 UBE2D1P51668 147 aa5.4□□□□□ -1.54
COL6A3-208ENST00000468792 TMEM170BQ5T4T1 132 aa5.4□□□□□ -1.54
COL6A3-208ENST00000468792 OR5A1Q8NGJ0 315 aa5.4□□□□□ -1.54
COL6A3-208ENST00000468792 OPRPNQ99935 248 aaPredicted RBP5.4□□□□□ -1.54
COL6A3-208ENST00000468792 TTTY13Q9BZ97 58 aa5.4□□□□□ -1.54
COL6A3-208ENST00000468792 NOTCH3Q9UM47 2321 aa5.4□□□□□ -1.55
COL6A3-208ENST00000468792 F8P00451 2351 aa5.4□□□□□ -1.55
COL6A3-208ENST00000468792 IGHV1-58A0A0C4DH39 117 aa5.39□□□□□ -1.55
COL6A3-208ENST00000468792 A0A0J9YXV3 536 aa5.39□□□□□ -1.55
COL6A3-208ENST00000468792 A0A0J9YY99 117 aa5.39□□□□□ -1.55
COL6A3-208ENST00000468792 A8MZ25 164 aa5.39□□□□□ -1.55
COL6A3-208ENST00000468792 LCE2CQ5TA81 110 aa5.39□□□□□ -1.55
COL6A3-208ENST00000468792 NTM-AS1Q6ZSK4 140 aa5.39□□□□□ -1.55
COL6A3-208ENST00000468792 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.38□□□□□ -1.55
COL6A3-208ENST00000468792 TRGV4A0A0C4DH28 118 aa5.38□□□□□ -1.55
COL6A3-208ENST00000468792 IGKV2-29A2NJV5 120 aaPredicted RBP5.38□□□□□ -1.55
COL6A3-208ENST00000468792 MIFP14174 115 aa5.38□□□□□ -1.55
COL6A3-208ENST00000468792 LGALS3P17931 250 aaKnown RBP5.38□□□□□ -1.55
COL6A3-208ENST00000468792 GCSHP23434 173 aa5.38□□□□□ -1.55
COL6A3-208ENST00000468792 FXYD2P54710 66 aa5.38□□□□□ -1.55
COL6A3-208ENST00000468792 TCTAP57738 103 aa5.38□□□□□ -1.55
COL6A3-208ENST00000468792 HERVK_113P63121 156 aa5.38□□□□□ -1.55
COL6A3-208ENST00000468792 DGAT2L7PQ6IED9 249 aa5.38□□□□□ -1.55
COL6A3-208ENST00000468792 Q6ZVH6 145 aa5.38□□□□□ -1.55
COL6A3-208ENST00000468792 PHLDA1Q8WV24 401 aaPredicted RBP5.38□□□□□ -1.55
COL6A3-208ENST00000468792 HIST1H4GQ99525 98 aa5.38□□□□□ -1.55
COL6A3-208ENST00000468792 TMEM243Q9BU79 118 aa5.38□□□□□ -1.55
COL6A3-208ENST00000468792 CDC42SE2Q9NRR3 84 aa5.38□□□□□ -1.55
COL6A3-208ENST00000468792 IGHV3-38A0A0C4DH36 116 aa5.37□□□□□ -1.55
COL6A3-208ENST00000468792 GAGE12JA6NER3 117 aa5.37□□□□□ -1.55
COL6A3-208ENST00000468792 PTTG1IPP53801 180 aa5.37□□□□□ -1.55
COL6A3-208ENST00000468792 EMP1P54849 157 aa5.37□□□□□ -1.55
COL6A3-208ENST00000468792 EGFEM1PQ0D2K5 195 aa5.37□□□□□ -1.55
COL6A3-208ENST00000468792 GAGE4Q13068 117 aa5.37□□□□□ -1.55
COL6A3-208ENST00000468792 GAGE5Q13069 117 aa5.37□□□□□ -1.55
COL6A3-208ENST00000468792 VAMP3Q15836 100 aa5.37□□□□□ -1.55
COL6A3-208ENST00000468792 GAGE13Q4V321 117 aa5.37□□□□□ -1.55
COL6A3-208ENST00000468792 SCGB1D4Q6XE38 83 aa5.37□□□□□ -1.55
COL6A3-208ENST00000468792 Q6ZUT4 128 aa5.37□□□□□ -1.55
COL6A3-208ENST00000468792 SPATA3Q8NHX4 192 aa5.37□□□□□ -1.55
COL6A3-208ENST00000468792 DEFB104AQ8WTQ1 72 aa5.37□□□□□ -1.55
COL6A3-208ENST00000468792 RNF183Q96D59 192 aa5.37□□□□□ -1.55
COL6A3-208ENST00000468792 VSIG2Q96IQ7 327 aa5.37□□□□□ -1.55
COL6A3-208ENST00000468792 PRO0255Q9UI72 69 aa5.37□□□□□ -1.55
COL6A3-208ENST00000468792 TRBV6-8A0A0A6YYG3 113 aa5.36□□□□□ -1.55
COL6A3-208ENST00000468792 IGLV5-39A0A0G2JS06 123 aa5.36□□□□□ -1.55
COL6A3-208ENST00000468792 TEX48A0A1B0GUV7 120 aa5.36□□□□□ -1.55
COL6A3-208ENST00000468792 CCL25O15444 150 aa5.36□□□□□ -1.55
COL6A3-208ENST00000468792 TIMM17BO60830 172 aa5.36□□□□□ -1.55
COL6A3-208ENST00000468792 IGHV3-30-3P0DP02 117 aa5.36□□□□□ -1.55
COL6A3-208ENST00000468792 TSPEAR-AS2P59090 65 aa5.36□□□□□ -1.55
COL6A3-208ENST00000468792 C21orf62-AS1Q17RA5 79 aa5.36□□□□□ -1.55
COL6A3-208ENST00000468792 C12orf74Q32Q52 190 aa5.36□□□□□ -1.55
COL6A3-208ENST00000468792 CEMP1Q6PRD7 247 aaPredicted RBP5.36□□□□□ -1.55
COL6A3-208ENST00000468792 GTF2H5Q6ZYL4 71 aa5.36□□□□□ -1.55
COL6A3-208ENST00000468792 TMEM101Q96IK0 257 aa5.36□□□□□ -1.55
COL6A3-208ENST00000468792 PPDPFQ9H3Y8 114 aa5.36□□□□□ -1.55
COL6A3-208ENST00000468792 GEMIN7Q9H840 131 aaKnown RBP5.36□□□□□ -1.55
COL6A3-208ENST00000468792 TRAV26-1A0A087WT03 109 aa5.35□□□□□ -1.55
COL6A3-208ENST00000468792 A0A0J9YXY3 114 aa5.35□□□□□ -1.55
COL6A3-208ENST00000468792 A0A1B0GUV1 79 aa5.35□□□□□ -1.55
COL6A3-208ENST00000468792 A0A1W2PPM0 123 aa5.35□□□□□ -1.55
COL6A3-208ENST00000468792 TMEM238C9JI98 176 aa5.35□□□□□ -1.55
COL6A3-208ENST00000468792 UBE2L6O14933 153 aa5.35□□□□□ -1.55
COL6A3-208ENST00000468792 IGHV3-30P01768 117 aa5.35□□□□□ -1.55
COL6A3-208ENST00000468792 IGHV3-30-5P0DP03 117 aa5.35□□□□□ -1.55
COL6A3-208ENST00000468792 SRSF9Q13242 221 aaKnown RBP eCLIP5.35□□□□□ -1.55
COL6A3-208ENST00000468792 LINC00242Q5T6M2 205 aa5.35□□□□□ -1.55
COL6A3-208ENST00000468792 AMMECR1LQ6DCA0 310 aa5.35□□□□□ -1.55
COL6A3-208ENST00000468792 ZFAND6Q6FIF0 208 aa5.35□□□□□ -1.55
COL6A3-208ENST00000468792 Q8NAQ8 132 aa5.35□□□□□ -1.55
COL6A3-208ENST00000468792 NBEAL2Q6ZNJ1 2754 aa5.35□□□□□ -1.55
COL6A3-208ENST00000468792 ANK2Q01484 3957 aa5.34□□□□□ -1.55
COL6A3-208ENST00000468792 GAGE10A6NGK3 116 aa5.34□□□□□ -1.55
COL6A3-208ENST00000468792 K7EP34 96 aa5.34□□□□□ -1.55
COL6A3-208ENST00000468792 IGHV4-30-4P0DP06 118 aa5.34□□□□□ -1.55
COL6A3-208ENST00000468792 FABP2P12104 132 aa5.34□□□□□ -1.55
COL6A3-208ENST00000468792 KRTAP24-1Q3LI83 254 aa5.34□□□□□ -1.55
COL6A3-208ENST00000468792 FAM222AQ5U5X8 452 aa5.34□□□□□ -1.55
COL6A3-208ENST00000468792 SH2D6Q7Z4S9 175 aa5.34□□□□□ -1.55
COL6A3-208ENST00000468792 SPANXDQ9BXN6 97 aa5.34□□□□□ -1.55
COL6A3-208ENST00000468792 NHP2Q9NX24 153 aaKnown RBP5.34□□□□□ -1.55
COL6A3-208ENST00000468792 SPANXCQ9NY87 97 aa5.34□□□□□ -1.55
COL6A3-208ENST00000468792 CDKN2A-AS1Q9UH64 79 aa5.34□□□□□ -1.55
COL6A3-208ENST00000468792 IGHV4-28A0A0C4DH34 117 aa5.33□□□□□ -1.56
COL6A3-208ENST00000468792 IGLL5B9A064 214 aa5.33□□□□□ -1.56
COL6A3-208ENST00000468792 H3BUT2 72 aa5.33□□□□□ -1.56
COL6A3-208ENST00000468792 K7EP13 123 aa5.33□□□□□ -1.56
COL6A3-208ENST00000468792 NDUFA1O15239 70 aa5.33□□□□□ -1.56
COL6A3-208ENST00000468792 SPART-AS1P0CW21 52 aa5.33□□□□□ -1.56
COL6A3-208ENST00000468792 DEFB130BP0DP73 79 aa5.33□□□□□ -1.56
COL6A3-208ENST00000468792 DEFB130AP0DP74 79 aa5.33□□□□□ -1.56
COL6A3-208ENST00000468792 RPL24P83731 157 aaKnown RBP5.33□□□□□ -1.56
COL6A3-208ENST00000468792 DEFB135Q30KP9 77 aa5.33□□□□□ -1.56
COL6A3-208ENST00000468792 LINC01561Q8N1V8 128 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms