RNA–Protein interactions for RNA: ENST00000467124.1

VPS13A-209, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5

Gene VPS13A, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-209ENST00000467124 PSME4Q14997 1843 aa0.36□□□□□ -2.35
VPS13A-209ENST00000467124 SYNE1Q8NF91 8797 aaKnown RBP0.36□□□□□ -2.35
VPS13A-209ENST00000467124 TRAV22A0A0B4J277 110 aa0.36□□□□□ -2.35
VPS13A-209ENST00000467124 MRPS10P82664 201 aaKnown RBP0.36□□□□□ -2.35
VPS13A-209ENST00000467124 Q6JHZ5 121 aa0.36□□□□□ -2.35
VPS13A-209ENST00000467124 LINC00472Q9H8W2 130 aa0.36□□□□□ -2.35
VPS13A-209ENST00000467124 MANBALQ9NQG1 85 aa0.36□□□□□ -2.35
VPS13A-209ENST00000467124 SYNE2Q8WXH0 6885 aaKnown RBP0.36□□□□□ -2.35
VPS13A-209ENST00000467124 SFT2D2O95562 160 aa0.35□□□□□ -2.35
VPS13A-209ENST00000467124 APOC3P02656 99 aa0.35□□□□□ -2.35
VPS13A-209ENST00000467124 COX17Q14061 63 aa0.35□□□□□ -2.35
VPS13A-209ENST00000467124 GTF2H5Q6ZYL4 71 aa0.35□□□□□ -2.35
VPS13A-209ENST00000467124 LINC01558Q9Y6Z2 57 aa0.35□□□□□ -2.35
VPS13A-209ENST00000467124 PZPP20742 1482 aa0.35□□□□□ -2.35
VPS13A-209ENST00000467124 FAM208BQ5VWN6 2430 aa0.34□□□□□ -2.35
VPS13A-209ENST00000467124 M0R3E3 92 aa0.34□□□□□ -2.36
VPS13A-209ENST00000467124 C10orf71Q711Q0 1435 aa0.34□□□□□ -2.36
VPS13A-209ENST00000467124 SCAPERQ9BY12 1400 aa0.34□□□□□ -2.36
VPS13A-209ENST00000467124 UQCR10Q9UDW1 63 aa0.34□□□□□ -2.36
VPS13A-209ENST00000467124 SPTBN2O15020 2390 aa0.34□□□□□ -2.36
VPS13A-209ENST00000467124 KDM5AP29375 1690 aaKnown RBP0.33□□□□□ -2.36
VPS13A-209ENST00000467124 ERCC6L2Q5T890 1561 aa0.33□□□□□ -2.36
VPS13A-209ENST00000467124 C20orf202A1L168 122 aa0.33□□□□□ -2.36
VPS13A-209ENST00000467124 CFDP00746 253 aaPredicted RBP0.33□□□□□ -2.36
VPS13A-209ENST00000467124 ATP5EP56381 51 aaPredicted RBP0.33□□□□□ -2.36
VPS13A-209ENST00000467124 DCDP81605 110 aaKnown RBP0.33□□□□□ -2.36
VPS13A-209ENST00000467124 Q0VG73 95 aa0.33□□□□□ -2.36
VPS13A-209ENST00000467124 CNFNQ9BYD5 112 aa0.33□□□□□ -2.36
VPS13A-209ENST00000467124 ARL2-SNX15V9GYD0 113 aa0.33□□□□□ -2.36
VPS13A-209ENST00000467124 LRP6O75581 1613 aa0.33□□□□□ -2.36
VPS13A-209ENST00000467124 KIF21AQ7Z4S6 1674 aa0.33□□□□□ -2.36
VPS13A-209ENST00000467124 EIF4G3O43432 1585 aaKnown RBP0.32□□□□□ -2.36
VPS13A-209ENST00000467124 LOC285095A0A1B0GVY8 99 aa0.32□□□□□ -2.36
VPS13A-209ENST00000467124 FAM223AQ8IWN6 122 aa0.32□□□□□ -2.36
VPS13A-209ENST00000467124 CELSR2Q9HCU4 2923 aa0.32□□□□□ -2.36
VPS13A-209ENST00000467124 NCOA3Q9Y6Q9 1424 aa0.31□□□□□ -2.36
VPS13A-209ENST00000467124 RIMS1Q86UR5 1692 aaKnown RBP0.31□□□□□ -2.36
VPS13A-209ENST00000467124 FXYD6-FXYD2A0A087WZ82 144 aa0.31□□□□□ -2.36
VPS13A-209ENST00000467124 IGLC1P0CG04 106 aa0.31□□□□□ -2.36
VPS13A-209ENST00000467124 NXT2Q9NPJ8 142 aaKnown RBP0.31□□□□□ -2.36
VPS13A-209ENST00000467124 CDC42SE2Q9NRR3 84 aa0.31□□□□□ -2.36
VPS13A-209ENST00000467124 ANK2Q01484 3957 aa0.3□□□□□ -2.36
VPS13A-209ENST00000467124 S100A3P33764 101 aa0.3□□□□□ -2.36
VPS13A-209ENST00000467124 HSD52Q0P140 79 aa0.3□□□□□ -2.36
VPS13A-209ENST00000467124 FAIMQ9NVQ4 179 aa0.3□□□□□ -2.36
VPS13A-209ENST00000467124 SPCS1Q9Y6A9 102 aa0.3□□□□□ -2.36
VPS13A-209ENST00000467124 FSIP2Q5CZC0 6907 aa0.3□□□□□ -2.36
VPS13A-209ENST00000467124 SHROOM2Q13796 1616 aa0.3□□□□□ -2.36
VPS13A-209ENST00000467124 PLCE1Q9P212 2302 aa0.3□□□□□ -2.36
VPS13A-209ENST00000467124 WDR7Q9Y4E6 1490 aa0.29□□□□□ -2.36
VPS13A-209ENST00000467124 PLXNB2O15031 1838 aa0.29□□□□□ -2.36
VPS13A-209ENST00000467124 WNK3Q9BYP7 1800 aa0.29□□□□□ -2.36
VPS13A-209ENST00000467124 TRAPPC2P0DI81 140 aa0.29□□□□□ -2.36
VPS13A-209ENST00000467124 TRAPPC2BP0DI82 140 aa0.29□□□□□ -2.36
VPS13A-209ENST00000467124 WHAMMP3Q1A5X7 153 aa0.29□□□□□ -2.36
VPS13A-209ENST00000467124 NRKQ7Z2Y5 1582 aa0.28□□□□□ -2.36
VPS13A-209ENST00000467124 LAMC1P11047 1609 aa0.28□□□□□ -2.36
VPS13A-209ENST00000467124 MAST4O15021 2626 aa0.28□□□□□ -2.36
VPS13A-209ENST00000467124 KDM3BQ7LBC6 1761 aa0.28□□□□□ -2.36
VPS13A-209ENST00000467124 CRYM-AS1A6NIL9 109 aa0.28□□□□□ -2.36
VPS13A-209ENST00000467124 ATP6V1G2-DDX39BF2Z307 99 aa0.28□□□□□ -2.36
VPS13A-209ENST00000467124 S100PP25815 95 aa0.28□□□□□ -2.36
VPS13A-209ENST00000467124 UBA52P62987 128 aaKnown RBP0.28□□□□□ -2.36
VPS13A-209ENST00000467124 Q8IZM0 81 aa0.28□□□□□ -2.36
VPS13A-209ENST00000467124 TP53AIP1Q9HCN2 124 aa0.28□□□□□ -2.36
VPS13A-209ENST00000467124 U3KQA8 63 aa0.28□□□□□ -2.36
VPS13A-209ENST00000467124 C2CD3Q4AC94 2353 aa0.28□□□□□ -2.36
VPS13A-209ENST00000467124 OTOGQ6ZRI0 2925 aa0.28□□□□□ -2.36
VPS13A-209ENST00000467124 LRRC37A2A6NM11 1700 aa0.27□□□□□ -2.37
VPS13A-209ENST00000467124 NCOR2Q9Y618 2525 aa0.27□□□□□ -2.37
VPS13A-209ENST00000467124 hADV29S1A0JD25 119 aa0.27□□□□□ -2.37
VPS13A-209ENST00000467124 NAP1L6A6NFF2 107 aa0.27□□□□□ -2.37
VPS13A-209ENST00000467124 FAM167A-AS1Q96KT0 104 aa0.27□□□□□ -2.37
VPS13A-209ENST00000467124 PTPRQQ9UMZ3 2332 aa0.27□□□□□ -2.37
VPS13A-209ENST00000467124 C10orf142B7Z368 130 aa0.26□□□□□ -2.37
VPS13A-209ENST00000467124 MGPP08493 103 aa0.26□□□□□ -2.37
VPS13A-209ENST00000467124 FDCSPQ8NFU4 85 aa0.26□□□□□ -2.37
VPS13A-209ENST00000467124 ARHGEF5Q12774 1597 aa0.26□□□□□ -2.37
VPS13A-209ENST00000467124 CC2D2AQ9P2K1 1620 aa0.26□□□□□ -2.37
VPS13A-209ENST00000467124 BTAF1O14981 1849 aa0.26□□□□□ -2.37
VPS13A-209ENST00000467124 SBF2Q86WG5 1849 aa0.26□□□□□ -2.37
VPS13A-209ENST00000467124 UNC79Q9P2D8 2635 aa0.26□□□□□ -2.37
VPS13A-209ENST00000467124 ZNF292O60281 2723 aa0.26□□□□□ -2.37
VPS13A-209ENST00000467124 LRP1Q07954 4544 aaKnown RBP0.26□□□□□ -2.37
VPS13A-209ENST00000467124 ARHGAP5Q13017 1502 aa0.25□□□□□ -2.37
VPS13A-209ENST00000467124 UBE2D3P61077 147 aa0.25□□□□□ -2.37
VPS13A-209ENST00000467124 UBE2D2P62837 147 aa0.25□□□□□ -2.37
VPS13A-209ENST00000467124 C14orf144Q96I85 54 aa0.25□□□□□ -2.37
VPS13A-209ENST00000467124 PRO1854Q9UHT4 67 aa0.25□□□□□ -2.37
VPS13A-209ENST00000467124 CHD9Q3L8U1 2897 aa0.25□□□□□ -2.37
VPS13A-209ENST00000467124 NSD3Q9BZ95 1437 aa0.24□□□□□ -2.37
VPS13A-209ENST00000467124 AKAP6Q13023 2319 aa0.24□□□□□ -2.37
VPS13A-209ENST00000467124 FAM223BA6NKX1 122 aa0.24□□□□□ -2.37
VPS13A-209ENST00000467124 I3L2K1 104 aa0.24□□□□□ -2.37
VPS13A-209ENST00000467124 C12orf57Q99622 126 aa0.24□□□□□ -2.37
VPS13A-209ENST00000467124 TCHHQ07283 1943 aa0.24□□□□□ -2.37
VPS13A-209ENST00000467124 TET3O43151 1660 aa0.24□□□□□ -2.37
VPS13A-209ENST00000467124 MYOM1P52179 1685 aa0.24□□□□□ -2.37
VPS13A-209ENST00000467124 FAM135AQ9P2D6 1515 aa0.23□□□□□ -2.37
VPS13A-209ENST00000467124 SEC11AP67812 179 aa0.23□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms