RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	MGP	P08493	103 aa		6.31	□□□□□ -1.4
SYNE1-215	ENST00000460912	SNRPD3	P62318	126 aa	Known RBP	6.31	□□□□□ -1.4
SYNE1-215	ENST00000460912	CFAP126	Q5VTH2	177 aa		6.31	□□□□□ -1.4
SYNE1-215	ENST00000460912	HRCT1	Q6UXD1	115 aa		6.31	□□□□□ -1.4
SYNE1-215	ENST00000460912	KLHL30-AS1	Q8NEE0	82 aa		6.31	□□□□□ -1.4
SYNE1-215	ENST00000460912	MAP6D1	Q9H9H5	199 aa		6.31	□□□□□ -1.4
SYNE1-215	ENST00000460912	CFC1B	P0CG36	223 aa		6.31	□□□□□ -1.4
SYNE1-215	ENST00000460912	CFC1	P0CG37	223 aa		6.31	□□□□□ -1.4
SYNE1-215	ENST00000460912	IFITM1	P13164	125 aa		6.31	□□□□□ -1.4
SYNE1-215	ENST00000460912	S100A4	P26447	101 aa	Known RBP	6.31	□□□□□ -1.4
SYNE1-215	ENST00000460912	DEFB114	Q30KQ6	69 aa		6.31	□□□□□ -1.4
SYNE1-215	ENST00000460912		M0R2P5	195 aa		6.31	□□□□□ -1.4
SYNE1-215	ENST00000460912	C5orf47	Q569G3	176 aa		6.31	□□□□□ -1.4
SYNE1-215	ENST00000460912	NDUFA11	Q86Y39	141 aa		6.31	□□□□□ -1.4
SYNE1-215	ENST00000460912	CHCHD5	Q9BSY4	110 aa		6.31	□□□□□ -1.4
SYNE1-215	ENST00000460912	VWF	P04275	2813 aa		6.31	□□□□□ -1.4
SYNE1-215	ENST00000460912	LEPROT	O15243	131 aa		6.3	□□□□□ -1.4
SYNE1-215	ENST00000460912	S100A7L2	Q5SY68	101 aa		6.3	□□□□□ -1.4
SYNE1-215	ENST00000460912	OPRPN	Q99935	248 aa	Predicted RBP	6.3	□□□□□ -1.4
SYNE1-215	ENST00000460912	C19orf73	Q9NVV2	129 aa		6.3	□□□□□ -1.4
SYNE1-215	ENST00000460912	UBE2D4	Q9Y2X8	147 aa		6.3	□□□□□ -1.4
SYNE1-215	ENST00000460912		I3L3M4	83 aa		6.3	□□□□□ -1.4
SYNE1-215	ENST00000460912	RHOD	O00212	210 aa		6.3	□□□□□ -1.4
SYNE1-215	ENST00000460912	TRGV11	A0A075B6L2	103 aa		6.3	□□□□□ -1.4
SYNE1-215	ENST00000460912	OR11H12	B2RN74	326 aa		6.3	□□□□□ -1.4
SYNE1-215	ENST00000460912	ZNF56	Q15929	161 aa		6.3	□□□□□ -1.4
SYNE1-215	ENST00000460912	TMEM61	Q8N0U2	210 aa		6.3	□□□□□ -1.4
SYNE1-215	ENST00000460912	OR11H1	Q8NG94	326 aa		6.3	□□□□□ -1.4
SYNE1-215	ENST00000460912	OR11H2	Q8NH07	326 aa		6.3	□□□□□ -1.4
SYNE1-215	ENST00000460912	ERG28	Q9UKR5	140 aa		6.3	□□□□□ -1.4
SYNE1-215	ENST00000460912	INAFM1	C9JVW0	142 aa		6.29	□□□□□ -1.4
SYNE1-215	ENST00000460912	LINC00694	P0DN24	101 aa		6.29	□□□□□ -1.4
SYNE1-215	ENST00000460912	ODF3L2	Q3SX64	289 aa		6.29	□□□□□ -1.4
SYNE1-215	ENST00000460912		Q6ZUT4	128 aa		6.29	□□□□□ -1.4
SYNE1-215	ENST00000460912	OR13C6P	Q8NH95	151 aa		6.29	□□□□□ -1.4
SYNE1-215	ENST00000460912	TMEM263	Q8WUH6	116 aa	Known RBP	6.29	□□□□□ -1.4
SYNE1-215	ENST00000460912	SPATA25	Q9BR10	227 aa		6.29	□□□□□ -1.4
SYNE1-215	ENST00000460912	IGKV3-7	A0A075B6H7	116 aa		6.29	□□□□□ -1.4
SYNE1-215	ENST00000460912	PRM2	P04554	102 aa		6.29	□□□□□ -1.4
SYNE1-215	ENST00000460912	DUX5	Q96PT3	197 aa		6.29	□□□□□ -1.4
SYNE1-215	ENST00000460912	MYO9A	B2RTY4	2548 aa		6.29	□□□□□ -1.4
SYNE1-215	ENST00000460912	IGHV3-53	P01767	116 aa		6.29	□□□□□ -1.4
SYNE1-215	ENST00000460912	C1orf158	Q8N1D5	194 aa		6.29	□□□□□ -1.4
SYNE1-215	ENST00000460912	KIRREL3-AS3	Q8N7Y1	241 aa	Predicted RBP	6.29	□□□□□ -1.4
SYNE1-215	ENST00000460912	LINC01006	Q8NI28	216 aa		6.29	□□□□□ -1.4
SYNE1-215	ENST00000460912	RAX2	Q96IS3	184 aa		6.29	□□□□□ -1.4
SYNE1-215	ENST00000460912	KNCN	A6PVL3	124 aa		6.28	□□□□□ -1.4
SYNE1-215	ENST00000460912	CIRBP	Q14011	172 aa	Known RBP	6.28	□□□□□ -1.4
SYNE1-215	ENST00000460912	DEFB136	Q30KP8	78 aa		6.28	□□□□□ -1.4
SYNE1-215	ENST00000460912	ZNF815P	A8K554	130 aa		6.28	□□□□□ -1.4
SYNE1-215	ENST00000460912	SCGB1A1	P11684	91 aa		6.28	□□□□□ -1.4
SYNE1-215	ENST00000460912	RPL13A	P40429	203 aa	Known RBP	6.28	□□□□□ -1.4
SYNE1-215	ENST00000460912	RPL11	P62913	178 aa	Known RBP	6.28	□□□□□ -1.4
SYNE1-215	ENST00000460912	PRIMA1	Q86XR5	153 aa		6.28	□□□□□ -1.4
SYNE1-215	ENST00000460912	CSNK1G2-AS1	Q8NCQ2	148 aa		6.28	□□□□□ -1.4
SYNE1-215	ENST00000460912	ATP6V0E2	Q8NHE4	81 aa		6.28	□□□□□ -1.4
SYNE1-215	ENST00000460912	FAM110A	Q9BQ89	295 aa		6.28	□□□□□ -1.4
SYNE1-215	ENST00000460912	MRAP	Q8TCY5	172 aa		6.27	□□□□□ -1.41
SYNE1-215	ENST00000460912	TIMM21	Q9BVV7	248 aa		6.27	□□□□□ -1.41
SYNE1-215	ENST00000460912	TRAV25	A0A0B4J276	109 aa		6.27	□□□□□ -1.41
SYNE1-215	ENST00000460912	TINCR	A0A1B0GVN0	87 aa		6.27	□□□□□ -1.41
SYNE1-215	ENST00000460912		J3QQQ9	107 aa		6.27	□□□□□ -1.41
SYNE1-215	ENST00000460912	TNFRSF18	Q9Y5U5	241 aa		6.27	□□□□□ -1.41
SYNE1-215	ENST00000460912		A0A0B4J2C4	111 aa		6.27	□□□□□ -1.41
SYNE1-215	ENST00000460912		C9JAW5	83 aa		6.27	□□□□□ -1.41
SYNE1-215	ENST00000460912	DNAJC30	Q96LL9	226 aa		6.27	□□□□□ -1.41
SYNE1-215	ENST00000460912	SPANXD	Q9BXN6	97 aa		6.27	□□□□□ -1.41
SYNE1-215	ENST00000460912	SPANXC	Q9NY87	97 aa		6.27	□□□□□ -1.41
SYNE1-215	ENST00000460912	SON	P18583	2426 aa	Known RBP	6.26	□□□□□ -1.41
SYNE1-215	ENST00000460912	IGLV5-39	A0A0G2JS06	123 aa		6.26	□□□□□ -1.41
SYNE1-215	ENST00000460912		A8MWV9	139 aa		6.26	□□□□□ -1.41
SYNE1-215	ENST00000460912	WIPF1	O43516	503 aa		6.26	□□□□□ -1.41
SYNE1-215	ENST00000460912	C15orf53	Q8NAA6	179 aa		6.26	□□□□□ -1.41
SYNE1-215	ENST00000460912	CSDC2	Q9Y534	153 aa	Known RBP	6.26	□□□□□ -1.41
SYNE1-215	ENST00000460912	SETD2	Q9BYW2	2564 aa	Predicted RBP	6.25	□□□□□ -1.41
SYNE1-215	ENST00000460912	TRAV4	A0A0B4J268	109 aa		6.25	□□□□□ -1.41
SYNE1-215	ENST00000460912	SMIM9	A6NGZ8	99 aa		6.25	□□□□□ -1.41
SYNE1-215	ENST00000460912	PRSS2	P07478	247 aa		6.25	□□□□□ -1.41
SYNE1-215	ENST00000460912	CARD19	Q96LW7	228 aa		6.25	□□□□□ -1.41
SYNE1-215	ENST00000460912	FN1	P02751	2386 aa	Known RBP	6.25	□□□□□ -1.41
SYNE1-215	ENST00000460912	FLNB	O75369	2602 aa	Known RBP	6.25	□□□□□ -1.41
SYNE1-215	ENST00000460912		A0A0J9YXY3	114 aa		6.25	□□□□□ -1.41
SYNE1-215	ENST00000460912	CD28	P10747	220 aa		6.25	□□□□□ -1.41
SYNE1-215	ENST00000460912	NDUFV3	P56181	108 aa	Known RBP	6.25	□□□□□ -1.41
SYNE1-215	ENST00000460912	DEFB131A	P59861	70 aa		6.25	□□□□□ -1.41
SYNE1-215	ENST00000460912	ZNF415	Q09FC8	603 aa		6.25	□□□□□ -1.41
SYNE1-215	ENST00000460912	DNHD1	Q96M86	4753 aa		6.25	□□□□□ -1.41
SYNE1-215	ENST00000460912	FOXI1	Q12951	378 aa		6.24	□□□□□ -1.41
SYNE1-215	ENST00000460912	SPANXA1	Q9NS26	97 aa		6.24	□□□□□ -1.41
SYNE1-215	ENST00000460912	DNAH9	Q9NYC9	4486 aa		6.24	□□□□□ -1.41
SYNE1-215	ENST00000460912	HUWE1	Q7Z6Z7	4374 aa	Known RBP	6.24	□□□□□ -1.41
SYNE1-215	ENST00000460912		A0A0J9YXV3	536 aa		6.24	□□□□□ -1.41
SYNE1-215	ENST00000460912	IGHV3-33	P01772	117 aa		6.24	□□□□□ -1.41
SYNE1-215	ENST00000460912	ADAMTSL4-AS1	Q5T5F5	129 aa		6.24	□□□□□ -1.41
SYNE1-215	ENST00000460912	NTM-AS1	Q6ZSK4	140 aa		6.24	□□□□□ -1.41
SYNE1-215	ENST00000460912	VSIG2	Q96IQ7	327 aa		6.24	□□□□□ -1.41
SYNE1-215	ENST00000460912	CDIP1	Q9H305	208 aa		6.24	□□□□□ -1.41
SYNE1-215	ENST00000460912	IGHV3-30-3	P0DP02	117 aa		6.24	□□□□□ -1.41
SYNE1-215	ENST00000460912	FAM236A	A0A1B0GUQ0	79 aa		6.23	□□□□□ -1.41
SYNE1-215	ENST00000460912	FAM236B	A0A1B0GV22	79 aa		6.23	□□□□□ -1.41

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