RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 C2orf66Q6UXQ4 117 aa7.54□□□□□ -1.2
SCN9A-205ENST00000454569 Q8N3U1 123 aa7.54□□□□□ -1.2
SCN9A-205ENST00000454569 Q8N976 141 aa7.54□□□□□ -1.2
SCN9A-205ENST00000454569 FAM104AQ969W3 186 aa7.54□□□□□ -1.2
SCN9A-205ENST00000454569 C2orf88Q9BSF0 95 aa7.54□□□□□ -1.2
SCN9A-205ENST00000454569 CYSLTR1Q9Y271 337 aa7.54□□□□□ -1.2
SCN9A-205ENST00000454569 DNAH1Q9P2D7 4330 aa7.54□□□□□ -1.2
SCN9A-205ENST00000454569 TRBV6-8A0A0A6YYG3 113 aa7.54□□□□□ -1.2
SCN9A-205ENST00000454569 LINC01549A6NIU2 74 aa7.54□□□□□ -1.2
SCN9A-205ENST00000454569 PET117Q6UWS5 81 aa7.54□□□□□ -1.2
SCN9A-205ENST00000454569 TOMM6Q96B49 74 aa7.54□□□□□ -1.2
SCN9A-205ENST00000454569 VPS13DQ5THJ4 4388 aa7.53□□□□□ -1.2
SCN9A-205ENST00000454569 SPATA12Q7Z6I5 190 aa7.53□□□□□ -1.2
SCN9A-205ENST00000454569 C20orf203Q8NBC4 194 aa7.53□□□□□ -1.2
SCN9A-205ENST00000454569 MUC7Q8TAX7 377 aa7.53□□□□□ -1.2
SCN9A-205ENST00000454569 OPRPNQ99935 248 aaPredicted RBP7.53□□□□□ -1.2
SCN9A-205ENST00000454569 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.52□□□□□ -1.21
SCN9A-205ENST00000454569 TEX43Q6ZNM6 134 aa7.52□□□□□ -1.21
SCN9A-205ENST00000454569 WWC2-AS2Q96NR7 200 aa7.52□□□□□ -1.21
SCN9A-205ENST00000454569 SCGB3A1Q96QR1 104 aa7.52□□□□□ -1.21
SCN9A-205ENST00000454569 GAGE6Q13070 117 aa7.51□□□□□ -1.21
SCN9A-205ENST00000454569 ZC2HC1BQ5TFG8 222 aa7.51□□□□□ -1.21
SCN9A-205ENST00000454569 LINC01545Q5VT33 79 aa7.51□□□□□ -1.21
SCN9A-205ENST00000454569 Q6ZN92 141 aa7.51□□□□□ -1.21
SCN9A-205ENST00000454569 C15orf53Q8NAA6 179 aa7.51□□□□□ -1.21
SCN9A-205ENST00000454569 LINC00588Q9Y4M8 146 aa7.51□□□□□ -1.21
SCN9A-205ENST00000454569 NUPR2A6NF83 97 aa7.5□□□□□ -1.21
SCN9A-205ENST00000454569 PRSS1P07477 247 aa7.5□□□□□ -1.21
SCN9A-205ENST00000454569 ERASQ7Z444 233 aa7.5□□□□□ -1.21
SCN9A-205ENST00000454569 WFDC10BQ8IUB3 73 aa7.5□□□□□ -1.21
SCN9A-205ENST00000454569 ATOH7Q8N100 152 aa7.5□□□□□ -1.21
SCN9A-205ENST00000454569 VAMP8Q9BV40 100 aa7.5□□□□□ -1.21
SCN9A-205ENST00000454569 TRBV25-1A0A075B6N4 114 aa7.5□□□□□ -1.21
SCN9A-205ENST00000454569 IGIPA6NJ69 53 aa7.5□□□□□ -1.21
SCN9A-205ENST00000454569 RNASE13Q5GAN3 156 aaKnown RBP7.5□□□□□ -1.21
SCN9A-205ENST00000454569 LELP1Q5T871 98 aa7.5□□□□□ -1.21
SCN9A-205ENST00000454569 LGALS9CQ6DKI2 356 aa7.5□□□□□ -1.21
SCN9A-205ENST00000454569 PMCHL2Q9BQD1 86 aa7.5□□□□□ -1.21
SCN9A-205ENST00000454569 CHCHD5Q9BSY4 110 aa7.5□□□□□ -1.21
SCN9A-205ENST00000454569 TMEM243Q9BU79 118 aa7.5□□□□□ -1.21
SCN9A-205ENST00000454569 UBE2D4Q9Y2X8 147 aa7.5□□□□□ -1.21
SCN9A-205ENST00000454569 IGLV4-60A0A075B6I1 120 aa7.49□□□□□ -1.21
SCN9A-205ENST00000454569 SH2D6Q7Z4S9 175 aa7.49□□□□□ -1.21
SCN9A-205ENST00000454569 TIMM17AQ99595 171 aa7.49□□□□□ -1.21
SCN9A-205ENST00000454569 FGF6P10767 208 aa7.48□□□□□ -1.21
SCN9A-205ENST00000454569 TIRAPP58753 221 aa7.48□□□□□ -1.21
SCN9A-205ENST00000454569 MPV17L2Q567V2 206 aa7.48□□□□□ -1.21
SCN9A-205ENST00000454569 KLK5Q9Y337 293 aaPredicted RBP7.48□□□□□ -1.21
SCN9A-205ENST00000454569 PAM16Q9Y3D7 125 aa7.48□□□□□ -1.21
SCN9A-205ENST00000454569 TSTD3H0UI37 97 aa7.47□□□□□ -1.21
SCN9A-205ENST00000454569 CASC10Q5T4H9 136 aa7.47□□□□□ -1.21
SCN9A-205ENST00000454569 BAALCQ8WXS3 180 aa7.47□□□□□ -1.21
SCN9A-205ENST00000454569 TMEM141Q96I45 108 aa7.47□□□□□ -1.21
SCN9A-205ENST00000454569 C14orf144Q96I85 54 aa7.47□□□□□ -1.21
SCN9A-205ENST00000454569 HYDINQ4G0P3 5121 aa7.47□□□□□ -1.21
SCN9A-205ENST00000454569 KMT2AQ03164 3969 aa7.47□□□□□ -1.21
SCN9A-205ENST00000454569 IGLV4-3A0A075B6K6 122 aa7.46□□□□□ -1.21
SCN9A-205ENST00000454569 TRAV9-2A0A087WT02 112 aa7.46□□□□□ -1.21
SCN9A-205ENST00000454569 TRAV12-1A0A0B4J245 112 aa7.46□□□□□ -1.21
SCN9A-205ENST00000454569 TMEM262E9PQX1 116 aa7.46□□□□□ -1.21
SCN9A-205ENST00000454569 RBX1P62877 108 aa7.46□□□□□ -1.21
SCN9A-205ENST00000454569 SPATA45Q537H7 98 aa7.46□□□□□ -1.21
SCN9A-205ENST00000454569 TMEM97Q5BJF2 176 aa7.46□□□□□ -1.21
SCN9A-205ENST00000454569 Q6ZUT4 128 aa7.46□□□□□ -1.21
SCN9A-205ENST00000454569 ZNF664Q8N3J9 261 aa7.46□□□□□ -1.21
SCN9A-205ENST00000454569 A0A087WX48 190 aa7.46□□□□□ -1.22
SCN9A-205ENST00000454569 IGHV3-30P01768 117 aa7.46□□□□□ -1.22
SCN9A-205ENST00000454569 IGHV3-33P01772 117 aa7.46□□□□□ -1.22
SCN9A-205ENST00000454569 IGHV3-30-3P0DP02 117 aa7.46□□□□□ -1.22
SCN9A-205ENST00000454569 IGHV3-30-5P0DP03 117 aa7.46□□□□□ -1.22
SCN9A-205ENST00000454569 PKIAP61925 76 aa7.46□□□□□ -1.22
SCN9A-205ENST00000454569 MRPL52Q86TS9 123 aaKnown RBP7.46□□□□□ -1.22
SCN9A-205ENST00000454569 PRO1933Q9H354 126 aa7.46□□□□□ -1.22
SCN9A-205ENST00000454569 MRPS16Q9Y3D3 137 aaKnown RBP7.46□□□□□ -1.22
SCN9A-205ENST00000454569 hDV102S1A0JD36 115 aa7.45□□□□□ -1.22
SCN9A-205ENST00000454569 PRSS29PA6NIE9 313 aa7.45□□□□□ -1.22
SCN9A-205ENST00000454569 UBE2L6O14933 153 aa7.45□□□□□ -1.22
SCN9A-205ENST00000454569 CCL18P55774 89 aa7.45□□□□□ -1.22
SCN9A-205ENST00000454569 PMVKQ15126 192 aa7.45□□□□□ -1.22
SCN9A-205ENST00000454569 PAPPA-AS1Q5QFB9 102 aa7.45□□□□□ -1.22
SCN9A-205ENST00000454569 CDC42SE2Q9NRR3 84 aa7.45□□□□□ -1.22
SCN9A-205ENST00000454569 SPANXA1Q9NS26 97 aa7.45□□□□□ -1.22
SCN9A-205ENST00000454569 PYGO1Q9Y3Y4 419 aa7.45□□□□□ -1.22
SCN9A-205ENST00000454569 F8VRH5 84 aa7.44□□□□□ -1.22
SCN9A-205ENST00000454569 DPM2O94777 84 aa7.44□□□□□ -1.22
SCN9A-205ENST00000454569 IGKCP01834 107 aa7.44□□□□□ -1.22
SCN9A-205ENST00000454569 TIMM21Q9BVV7 248 aa7.44□□□□□ -1.22
SCN9A-205ENST00000454569 MRPL35Q9NZE8 188 aaKnown RBP7.44□□□□□ -1.22
SCN9A-205ENST00000454569 DNAH10Q8IVF4 4471 aa7.44□□□□□ -1.22
SCN9A-205ENST00000454569 ALMS1Q8TCU4 4167 aa7.43□□□□□ -1.22
SCN9A-205ENST00000454569 TRAV8-6A0A0B4J262 113 aa7.43□□□□□ -1.22
SCN9A-205ENST00000454569 H7C423 109 aa7.43□□□□□ -1.22
SCN9A-205ENST00000454569 NPSP0C0P6 89 aa7.43□□□□□ -1.22
SCN9A-205ENST00000454569 PLNP26678 52 aa7.43□□□□□ -1.22
SCN9A-205ENST00000454569 AMMECR1LQ6DCA0 310 aa7.43□□□□□ -1.22
SCN9A-205ENST00000454569 CLPSL2Q6UWE3 100 aa7.43□□□□□ -1.22
SCN9A-205ENST00000454569 A0A1B0GUV1 79 aa7.42□□□□□ -1.22
SCN9A-205ENST00000454569 SMAGPQ0VAQ4 97 aa7.42□□□□□ -1.22
SCN9A-205ENST00000454569 DGAT2L7PQ6IED9 249 aa7.42□□□□□ -1.22
SCN9A-205ENST00000454569 AMELXQ99217 191 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms