RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 CRPP02741 224 aa10.64□□□□□ -0.71
USP40-206ENST00000443711 LINC00269Q8N2A0 174 aa10.64□□□□□ -0.71
USP40-206ENST00000443711 ZNF664Q8N3J9 261 aa10.64□□□□□ -0.71
USP40-206ENST00000443711 TRAV8-3A0A0A6YYJ7 113 aa10.63□□□□□ -0.71
USP40-206ENST00000443711 NPSP0C0P6 89 aa10.63□□□□□ -0.71
USP40-206ENST00000443711 MRPS36P82909 103 aaKnown RBP10.63□□□□□ -0.71
USP40-206ENST00000443711 UBE2WQ96B02 151 aa10.63□□□□□ -0.71
USP40-206ENST00000443711 SCGB3A1Q96QR1 104 aa10.63□□□□□ -0.71
USP40-206ENST00000443711 DNAH6Q9C0G6 4158 aa10.62□□□□□ -0.71
USP40-206ENST00000443711 A0A096LNJ9 63 aa10.62□□□□□ -0.71
USP40-206ENST00000443711 IGIPA6NJ69 53 aa10.62□□□□□ -0.71
USP40-206ENST00000443711 NDUFA6P56556 154 aa10.62□□□□□ -0.71
USP40-206ENST00000443711 LINC00310P59036 64 aa10.62□□□□□ -0.71
USP40-206ENST00000443711 REG3AQ06141 175 aa10.62□□□□□ -0.71
USP40-206ENST00000443711 PMCHL1Q16048 86 aa10.62□□□□□ -0.71
USP40-206ENST00000443711 ENHOQ6UWT2 76 aa10.62□□□□□ -0.71
USP40-206ENST00000443711 ERASQ7Z444 233 aa10.62□□□□□ -0.71
USP40-206ENST00000443711 TIMM17AQ99595 171 aa10.62□□□□□ -0.71
USP40-206ENST00000443711 PRR34Q9NV39 138 aa10.62□□□□□ -0.71
USP40-206ENST00000443711 NUPR1O60356 82 aa10.61□□□□□ -0.71
USP40-206ENST00000443711 PAPPA-AS1Q5QFB9 102 aa10.61□□□□□ -0.71
USP40-206ENST00000443711 Q6ZUT4 128 aa10.61□□□□□ -0.71
USP40-206ENST00000443711 NFE4Q86UQ8 179 aa10.61□□□□□ -0.71
USP40-206ENST00000443711 TMEM141Q96I45 108 aa10.61□□□□□ -0.71
USP40-206ENST00000443711 OPRPNQ99935 248 aaPredicted RBP10.61□□□□□ -0.71
USP40-206ENST00000443711 Q9HAA7 133 aa10.61□□□□□ -0.71
USP40-206ENST00000443711 IGLV4-3A0A075B6K6 122 aa10.6□□□□□ -0.71
USP40-206ENST00000443711 MIAQ16674 131 aa10.6□□□□□ -0.71
USP40-206ENST00000443711 PDZD11Q5EBL8 140 aa10.6□□□□□ -0.71
USP40-206ENST00000443711 COA6Q5JTJ3 125 aaKnown RBP10.6□□□□□ -0.71
USP40-206ENST00000443711 C1orf134Q5TEV5 83 aa10.6□□□□□ -0.71
USP40-206ENST00000443711 CLPSL2Q6UWE3 100 aa10.6□□□□□ -0.71
USP40-206ENST00000443711 Q6ZN92 141 aa10.6□□□□□ -0.71
USP40-206ENST00000443711 C6orf223Q8N319 242 aa10.6□□□□□ -0.71
USP40-206ENST00000443711 FAM19A2Q8N3H0 131 aa10.6□□□□□ -0.71
USP40-206ENST00000443711 FAM104AQ969W3 186 aa10.6□□□□□ -0.71
USP40-206ENST00000443711 RMI2Q96E14 147 aa10.6□□□□□ -0.71
USP40-206ENST00000443711 IGKV3OR2-268A0A0C4DH90 116 aa10.59□□□□□ -0.71
USP40-206ENST00000443711 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.59□□□□□ -0.71
USP40-206ENST00000443711 RNASE13Q5GAN3 156 aaKnown RBP10.59□□□□□ -0.71
USP40-206ENST00000443711 VCX2Q9H322 139 aa10.59□□□□□ -0.71
USP40-206ENST00000443711 TRAV8-4A0A0B4J246 113 aa10.58□□□□□ -0.72
USP40-206ENST00000443711 ATP5LO75964 103 aa10.58□□□□□ -0.72
USP40-206ENST00000443711 KMT2CQ8NEZ4 4911 aaKnown RBP10.57□□□□□ -0.72
USP40-206ENST00000443711 TEX43Q6ZNM6 134 aa10.57□□□□□ -0.72
USP40-206ENST00000443711 C1orf43Q9BWL3 253 aa10.57□□□□□ -0.72
USP40-206ENST00000443711 TM2D2Q9BX73 214 aa10.57□□□□□ -0.72
USP40-206ENST00000443711 COX11Q9Y6N1 276 aa10.57□□□□□ -0.72
USP40-206ENST00000443711 IGKV2D-24A0A075B6R9 120 aa10.56□□□□□ -0.72
USP40-206ENST00000443711 LINC00959A0A1B0GUT2 108 aa10.56□□□□□ -0.72
USP40-206ENST00000443711 IFITM10A6NMD0 228 aa10.56□□□□□ -0.72
USP40-206ENST00000443711 CCL25O15444 150 aa10.56□□□□□ -0.72
USP40-206ENST00000443711 SS18Q15532 418 aa10.56□□□□□ -0.72
USP40-206ENST00000443711 AMELXQ99217 191 aa10.56□□□□□ -0.72
USP40-206ENST00000443711 C2orf88Q9BSF0 95 aa10.56□□□□□ -0.72
USP40-206ENST00000443711 SACSQ9NZJ4 4579 aa10.55□□□□□ -0.72
USP40-206ENST00000443711 TRAV13-1A0A0B4J241 112 aa10.55□□□□□ -0.72
USP40-206ENST00000443711 LEPROTL1O95214 131 aa10.55□□□□□ -0.72
USP40-206ENST00000443711 S100A6P06703 90 aa10.55□□□□□ -0.72
USP40-206ENST00000443711 KMT2AQ03164 3969 aa10.54□□□□□ -0.72
USP40-206ENST00000443711 IGLV10-54A0A075B6I4 117 aa10.54□□□□□ -0.72
USP40-206ENST00000443711 IFI27L1Q96BM0 104 aa10.54□□□□□ -0.72
USP40-206ENST00000443711 PSCAO43653 123 aa10.53□□□□□ -0.72
USP40-206ENST00000443711 FABP4P15090 132 aa10.53□□□□□ -0.72
USP40-206ENST00000443711 PMVKQ15126 192 aa10.53□□□□□ -0.72
USP40-206ENST00000443711 ZC2HC1BQ5TFG8 222 aa10.53□□□□□ -0.72
USP40-206ENST00000443711 Q6ZRN7 208 aaPredicted RBP10.53□□□□□ -0.72
USP40-206ENST00000443711 LINC00173Q6ZV60 143 aa10.53□□□□□ -0.72
USP40-206ENST00000443711 BAALCQ8WXS3 180 aa10.53□□□□□ -0.72
USP40-206ENST00000443711 CHCHD10Q8WYQ3 142 aaPredicted RBP10.53□□□□□ -0.72
USP40-206ENST00000443711 HSPB8Q9UJY1 196 aa10.53□□□□□ -0.72
USP40-206ENST00000443711 PRSS1P07477 247 aa10.52□□□□□ -0.73
USP40-206ENST00000443711 PACRGQ96M98 296 aaPredicted RBP10.52□□□□□ -0.73
USP40-206ENST00000443711 KRTAP26-1Q6PEX3 210 aa10.51□□□□□ -0.73
USP40-206ENST00000443711 CST9LQ9H4G1 147 aa10.51□□□□□ -0.73
USP40-206ENST00000443711 RYR3Q15413 4870 aa10.51□□□□□ -0.73
USP40-206ENST00000443711 HYDINQ4G0P3 5121 aa10.5□□□□□ -0.73
USP40-206ENST00000443711 GAGE12HA6NDE8 117 aa10.5□□□□□ -0.73
USP40-206ENST00000443711 PRSS29PA6NIE9 313 aa10.5□□□□□ -0.73
USP40-206ENST00000443711 RTL8CO15255 209 aa10.5□□□□□ -0.73
USP40-206ENST00000443711 XCL1P47992 114 aa10.5□□□□□ -0.73
USP40-206ENST00000443711 UBE2D1P51668 147 aa10.5□□□□□ -0.73
USP40-206ENST00000443711 SEC11AP67812 179 aa10.49□□□□□ -0.73
USP40-206ENST00000443711 CD164L2Q6UWJ8 174 aa10.49□□□□□ -0.73
USP40-206ENST00000443711 TRAV12-1A0A0B4J245 112 aa10.48□□□□□ -0.73
USP40-206ENST00000443711 LINC00242Q5T6M2 205 aa10.48□□□□□ -0.73
USP40-206ENST00000443711 FAM19A3Q7Z5A8 133 aa10.48□□□□□ -0.73
USP40-206ENST00000443711 RYR2Q92736 4967 aa10.47□□□□□ -0.73
USP40-206ENST00000443711 S100A2P29034 98 aa10.47□□□□□ -0.73
USP40-206ENST00000443711 SNRPEP62304 92 aaKnown RBP10.47□□□□□ -0.73
USP40-206ENST00000443711 FOXI1Q12951 378 aa10.47□□□□□ -0.73
USP40-206ENST00000443711 LINC00336Q6ZUF6 198 aa10.47□□□□□ -0.73
USP40-206ENST00000443711 HIST3H2BBQ8N257 126 aa10.47□□□□□ -0.73
USP40-206ENST00000443711 MAPKAPK5-AS1Q8N8E1 139 aa10.47□□□□□ -0.73
USP40-206ENST00000443711 MAP1LC3CQ9BXW4 147 aa10.47□□□□□ -0.73
USP40-206ENST00000443711 A0A0J9YXV3 536 aa10.46□□□□□ -0.73
USP40-206ENST00000443711 GEMIN7Q9H840 131 aaKnown RBP10.46□□□□□ -0.73
USP40-206ENST00000443711 TINCRA0A1B0GVN0 87 aa10.45□□□□□ -0.74
USP40-206ENST00000443711 C5orf52A6NGY3 159 aa10.45□□□□□ -0.74
USP40-206ENST00000443711 COX7A2LO14548 114 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 285.1 ms