RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 IBA57-AS1B1ANH7 110 aa11.43□□□□□ -0.58
PTPRF-206ENST00000429895 ARHGAP21Q5T5U3 1957 aa11.43□□□□□ -0.58
PTPRF-206ENST00000429895 M0QY20 66 aa11.43□□□□□ -0.58
PTPRF-206ENST00000429895 TRBV6-4A0A1B0GX49 114 aa11.42□□□□□ -0.58
PTPRF-206ENST00000429895 G3V4G9 280 aa11.42□□□□□ -0.58
PTPRF-206ENST00000429895 CCKP06307 115 aa11.42□□□□□ -0.58
PTPRF-206ENST00000429895 ZFAND3Q9H8U3 227 aa11.42□□□□□ -0.58
PTPRF-206ENST00000429895 P0C879 139 aa11.42□□□□□ -0.58
PTPRF-206ENST00000429895 NANOS2P60321 138 aaKnown RBP11.41□□□□□ -0.58
PTPRF-206ENST00000429895 TP73-AS1Q9UF72 201 aa11.41□□□□□ -0.58
PTPRF-206ENST00000429895 K7ERS5 55 aa11.41□□□□□ -0.58
PTPRF-206ENST00000429895 LINC01006Q8NI28 216 aa11.41□□□□□ -0.58
PTPRF-206ENST00000429895 WFDC13Q8IUB5 93 aa11.41□□□□□ -0.58
PTPRF-206ENST00000429895 LINC00574Q9H8X3 128 aa11.41□□□□□ -0.58
PTPRF-206ENST00000429895 RBX1P62877 108 aa11.4□□□□□ -0.58
PTPRF-206ENST00000429895 IGHV4-30-4P0DP06 118 aa11.4□□□□□ -0.58
PTPRF-206ENST00000429895 ZNF106Q9H2Y7 1883 aaKnown RBP11.4□□□□□ -0.59
PTPRF-206ENST00000429895 COL4A3Q01955 1670 aa11.39□□□□□ -0.59
PTPRF-206ENST00000429895 HIVEP2P31629 2446 aa11.39□□□□□ -0.59
PTPRF-206ENST00000429895 C11orf71Q6IPW1 123 aa11.39□□□□□ -0.59
PTPRF-206ENST00000429895 Q6ZPA2 131 aa11.39□□□□□ -0.59
PTPRF-206ENST00000429895 CRIP1P50238 77 aa11.39□□□□□ -0.59
PTPRF-206ENST00000429895 TRIAP1O43715 76 aa11.38□□□□□ -0.59
PTPRF-206ENST00000429895 NCOA6Q14686 2063 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-206ENST00000429895 OXLD1Q5BKU9 147 aa11.38□□□□□ -0.59
PTPRF-206ENST00000429895 Q6ZS46 218 aa11.38□□□□□ -0.59
PTPRF-206ENST00000429895 PSMG3-AS1Q96PY0 264 aa11.38□□□□□ -0.59
PTPRF-206ENST00000429895 MUC6Q6W4X9 2439 aa11.38□□□□□ -0.59
PTPRF-206ENST00000429895 C2orf16Q68DN1 1984 aa11.38□□□□□ -0.59
PTPRF-206ENST00000429895 MAPKAPK5-AS1Q8N8E1 139 aa11.38□□□□□ -0.59
PTPRF-206ENST00000429895 PLAC8L1A1L4L8 177 aa11.37□□□□□ -0.59
PTPRF-206ENST00000429895 ZNF706Q9Y5V0 76 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-206ENST00000429895 SMR3AQ99954 134 aa11.37□□□□□ -0.59
PTPRF-206ENST00000429895 RETNQ9HD89 108 aa11.37□□□□□ -0.59
PTPRF-206ENST00000429895 TRBV6-5A0A0K0K1A5 114 aa11.36□□□□□ -0.59
PTPRF-206ENST00000429895 MT-ATP8P03928 68 aa11.36□□□□□ -0.59
PTPRF-206ENST00000429895 RNF185Q96GF1 192 aa11.36□□□□□ -0.59
PTPRF-206ENST00000429895 IGLV4-69A0A075B6H9 119 aa11.35□□□□□ -0.59
PTPRF-206ENST00000429895 LOC107984640A0A0U1RRK4 108 aa11.35□□□□□ -0.59
PTPRF-206ENST00000429895 CD164L2Q6UWJ8 174 aa11.35□□□□□ -0.59
PTPRF-206ENST00000429895 NDUFV3P56181 108 aaKnown RBP11.35□□□□□ -0.59
PTPRF-206ENST00000429895 UBE2D2P62837 147 aa11.35□□□□□ -0.59
PTPRF-206ENST00000429895 EBI3Q14213 229 aa11.35□□□□□ -0.59
PTPRF-206ENST00000429895 FAM236DA0A1B0GTK5 79 aa11.34□□□□□ -0.59
PTPRF-206ENST00000429895 M0R378 163 aa11.34□□□□□ -0.59
PTPRF-206ENST00000429895 FAM236CP0DP71 79 aa11.34□□□□□ -0.59
PTPRF-206ENST00000429895 LELP1Q5T871 98 aa11.34□□□□□ -0.59
PTPRF-206ENST00000429895 Q6ZQY7 126 aa11.34□□□□□ -0.59
PTPRF-206ENST00000429895 PRR4Q16378 134 aa11.34□□□□□ -0.59
PTPRF-206ENST00000429895 LINC00959A0A1B0GUT2 108 aa11.33□□□□□ -0.59
PTPRF-206ENST00000429895 TSHBP01222 138 aa11.33□□□□□ -0.6
PTPRF-206ENST00000429895 ZNF295-AS1Q8N0V1 137 aa11.33□□□□□ -0.6
PTPRF-206ENST00000429895 PRR9Q5T870 116 aa11.32□□□□□ -0.6
PTPRF-206ENST00000429895 MBD6Q96DN6 1003 aa11.32□□□□□ -0.6
PTPRF-206ENST00000429895 DHRS4-AS1Q9P1J3 65 aa11.32□□□□□ -0.6
PTPRF-206ENST00000429895 SNURFQ9Y675 71 aa11.32□□□□□ -0.6
PTPRF-206ENST00000429895 TECTAO75443 2155 aa11.32□□□□□ -0.6
PTPRF-206ENST00000429895 PRR15LQ9BU68 103 aa11.32□□□□□ -0.6
PTPRF-206ENST00000429895 EIF4EBP1Q13541 118 aaPredicted RBP11.31□□□□□ -0.6
PTPRF-206ENST00000429895 RNASE3P12724 160 aaKnown RBP11.3□□□□□ -0.6
PTPRF-206ENST00000429895 PLA2G2AP14555 144 aa11.3□□□□□ -0.6
PTPRF-206ENST00000429895 A0A0U1RQV1 116 aa11.3□□□□□ -0.6
PTPRF-206ENST00000429895 FAM30AQ9NZY2 134 aa11.28□□□□□ -0.6
PTPRF-206ENST00000429895 FSTL3O95633 263 aa11.28□□□□□ -0.6
PTPRF-206ENST00000429895 ATP5EP2Q5VTU8 51 aa11.28□□□□□ -0.6
PTPRF-206ENST00000429895 SERP1Q9Y6X1 66 aa11.28□□□□□ -0.6
PTPRF-206ENST00000429895 TRBV30A0A0K0K1B3 111 aa11.28□□□□□ -0.6
PTPRF-206ENST00000429895 CRIP3Q6Q6R5 217 aa11.28□□□□□ -0.6
PTPRF-206ENST00000429895 MRPS12O15235 138 aaKnown RBP11.27□□□□□ -0.6
PTPRF-206ENST00000429895 SMIM11BQ8TCY0 68 aa11.27□□□□□ -0.6
PTPRF-206ENST00000429895 TRBV27A0A0K0K1C4 114 aa11.27□□□□□ -0.61
PTPRF-206ENST00000429895 EDN2P20800 178 aa11.27□□□□□ -0.61
PTPRF-206ENST00000429895 U3KQK5 164 aa11.27□□□□□ -0.61
PTPRF-206ENST00000429895 FREM1Q5H8C1 2179 aa11.27□□□□□ -0.61
PTPRF-206ENST00000429895 OTOGLQ3ZCN5 2332 aa11.26□□□□□ -0.61
PTPRF-206ENST00000429895 UQCRQO14949 82 aa11.26□□□□□ -0.61
PTPRF-206ENST00000429895 NUPR2A6NF83 97 aa11.26□□□□□ -0.61
PTPRF-206ENST00000429895 C11orf21Q9P2W6 132 aa11.26□□□□□ -0.61
PTPRF-206ENST00000429895 PYGO1Q9Y3Y4 419 aa11.26□□□□□ -0.61
PTPRF-206ENST00000429895 WNK1Q9H4A3 2382 aa11.26□□□□□ -0.61
PTPRF-206ENST00000429895 NDUFC2-KCTD14E9PQ53 114 aa11.26□□□□□ -0.61
PTPRF-206ENST00000429895 IGLV2-11P01706 119 aa11.26□□□□□ -0.61
PTPRF-206ENST00000429895 CIRBP-AS1Q8TBR5 109 aa11.25□□□□□ -0.61
PTPRF-206ENST00000429895 Q8N9L7 120 aa11.25□□□□□ -0.61
PTPRF-206ENST00000429895 ZNF73O43830 326 aaPredicted RBP11.25□□□□□ -0.61
PTPRF-206ENST00000429895 BRI3O95415 125 aa11.25□□□□□ -0.61
PTPRF-206ENST00000429895 CDSNQ15517 529 aa11.25□□□□□ -0.61
PTPRF-206ENST00000429895 RETNLBQ9BQ08 111 aa11.25□□□□□ -0.61
PTPRF-206ENST00000429895 DSCAMO60469 2012 aa11.24□□□□□ -0.61
PTPRF-206ENST00000429895 MRGPRG-AS1Q2M3A8 158 aa11.24□□□□□ -0.61
PTPRF-206ENST00000429895 NRACQ8N912 160 aa11.24□□□□□ -0.61
PTPRF-206ENST00000429895 Q8N6K4 173 aa11.24□□□□□ -0.61
PTPRF-206ENST00000429895 LINC00474Q9P2X8 69 aa11.24□□□□□ -0.61
PTPRF-206ENST00000429895 POM121L12Q8N7R1 296 aa11.24□□□□□ -0.61
PTPRF-206ENST00000429895 CYSRT1A8MQ03 144 aa11.23□□□□□ -0.61
PTPRF-206ENST00000429895 M0QXV9 152 aa11.23□□□□□ -0.61
PTPRF-206ENST00000429895 IGLV1-40P01703 118 aa11.23□□□□□ -0.61
PTPRF-206ENST00000429895 FAM240AA0A1B0GVK7 77 aa11.23□□□□□ -0.61
PTPRF-206ENST00000429895 C10orf25Q5T742 122 aa11.23□□□□□ -0.61
PTPRF-206ENST00000429895 TANC2Q9HCD6 1990 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms