RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 LRRK2Q5S007 2527 aa10.14□□□□□ -0.79
CCDC88A-204ENST00000413716 IGHV7-81A0A0B4J1V7 117 aa10.14□□□□□ -0.79
CCDC88A-204ENST00000413716 IGLV9-49A0A0B4J1Y8 123 aa10.14□□□□□ -0.79
CCDC88A-204ENST00000413716 ZNF524Q96C55 264 aa10.14□□□□□ -0.79
CCDC88A-204ENST00000413716 MYO9AB2RTY4 2548 aa10.13□□□□□ -0.79
CCDC88A-204ENST00000413716 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.13□□□□□ -0.79
CCDC88A-204ENST00000413716 C5orf56Q8N8D9 126 aa10.13□□□□□ -0.79
CCDC88A-204ENST00000413716 INSL3P51460 131 aa10.13□□□□□ -0.79
CCDC88A-204ENST00000413716 MRPS12O15235 138 aaKnown RBP10.13□□□□□ -0.79
CCDC88A-204ENST00000413716 CEMP1Q6PRD7 247 aaPredicted RBP10.13□□□□□ -0.79
CCDC88A-204ENST00000413716 LINC00467Q9BRT7 94 aa10.13□□□□□ -0.79
CCDC88A-204ENST00000413716 K7EMT4 169 aa10.12□□□□□ -0.79
CCDC88A-204ENST00000413716 COX17Q14061 63 aa10.12□□□□□ -0.79
CCDC88A-204ENST00000413716 ZFYVE26Q68DK2 2539 aa10.12□□□□□ -0.79
CCDC88A-204ENST00000413716 Q6ZQY7 126 aa10.12□□□□□ -0.79
CCDC88A-204ENST00000413716 CACNA1AO00555 2505 aa10.12□□□□□ -0.79
CCDC88A-204ENST00000413716 ODF3L1Q8IXM7 274 aa10.12□□□□□ -0.79
CCDC88A-204ENST00000413716 ACACBO00763 2458 aa10.12□□□□□ -0.79
CCDC88A-204ENST00000413716 NEXN-AS1Q8NBZ9 246 aa10.11□□□□□ -0.79
CCDC88A-204ENST00000413716 LINC00474Q9P2X8 69 aa10.11□□□□□ -0.79
CCDC88A-204ENST00000413716 LY6LH3BQJ8 138 aa10.11□□□□□ -0.79
CCDC88A-204ENST00000413716 Q6JHZ5 121 aa10.1□□□□□ -0.79
CCDC88A-204ENST00000413716 SPAG11AQ6PDA7 123 aa10.1□□□□□ -0.79
CCDC88A-204ENST00000413716 C6orf99Q4VX62 202 aa10.1□□□□□ -0.79
CCDC88A-204ENST00000413716 POM121L12Q8N7R1 296 aa10.1□□□□□ -0.79
CCDC88A-204ENST00000413716 IGLV1-44P01699 117 aa10.1□□□□□ -0.79
CCDC88A-204ENST00000413716 PRSS33Q8NF86 280 aa10.1□□□□□ -0.79
CCDC88A-204ENST00000413716 HILS1P60008 231 aa10.1□□□□□ -0.79
CCDC88A-204ENST00000413716 CRYGAP11844 174 aa10.09□□□□□ -0.79
CCDC88A-204ENST00000413716 J3QKU1 62 aa10.09□□□□□ -0.79
CCDC88A-204ENST00000413716 PPDPFQ9H3Y8 114 aa10.09□□□□□ -0.79
CCDC88A-204ENST00000413716 CELA1Q9UNI1 258 aa10.09□□□□□ -0.79
CCDC88A-204ENST00000413716 ACANP16112 2415 aa10.09□□□□□ -0.79
CCDC88A-204ENST00000413716 FAM167A-AS1Q96KT0 104 aa10.09□□□□□ -0.79
CCDC88A-204ENST00000413716 CTSZQ9UBR2 303 aa10.08□□□□□ -0.8
CCDC88A-204ENST00000413716 COL4A5P29400 1685 aa10.08□□□□□ -0.8
CCDC88A-204ENST00000413716 M0R378 163 aa10.08□□□□□ -0.8
CCDC88A-204ENST00000413716 A8MZ25 164 aa10.08□□□□□ -0.8
CCDC88A-204ENST00000413716 IGFL3Q6UXB1 125 aa10.08□□□□□ -0.8
CCDC88A-204ENST00000413716 LINC00208Q96KT6 92 aa10.07□□□□□ -0.8
CCDC88A-204ENST00000413716 A6NDX4 124 aa10.07□□□□□ -0.8
CCDC88A-204ENST00000413716 PRAC2D3DTV9 90 aa10.07□□□□□ -0.8
CCDC88A-204ENST00000413716 LINC00322Q6ZN03 302 aaPredicted RBP10.07□□□□□ -0.8
CCDC88A-204ENST00000413716 CLUHP3Q96NS8 147 aa10.07□□□□□ -0.8
CCDC88A-204ENST00000413716 ODF3Q96PU9 254 aa10.07□□□□□ -0.8
CCDC88A-204ENST00000413716 DNAJC9-AS1A6NH13 148 aa10.07□□□□□ -0.8
CCDC88A-204ENST00000413716 DEFB113Q30KQ7 82 aa10.06□□□□□ -0.8
CCDC88A-204ENST00000413716 MYCNOSP40205 109 aa10.06□□□□□ -0.8
CCDC88A-204ENST00000413716 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.06□□□□□ -0.8
CCDC88A-204ENST00000413716 A0A0J9YX75 114 aa10.06□□□□□ -0.8
CCDC88A-204ENST00000413716 RITA1Q96K30 269 aa10.06□□□□□ -0.8
CCDC88A-204ENST00000413716 C1orf147Q96MC9 270 aaPredicted RBP10.06□□□□□ -0.8
CCDC88A-204ENST00000413716 CDKN2A-AS1Q9UH64 79 aa10.06□□□□□ -0.8
CCDC88A-204ENST00000413716 TMEM89A2RUT3 159 aa10.06□□□□□ -0.8
CCDC88A-204ENST00000413716 LST1O00453 97 aa10.06□□□□□ -0.8
CCDC88A-204ENST00000413716 CXCL6P80162 114 aa10.06□□□□□ -0.8
CCDC88A-204ENST00000413716 PYGO1Q9Y3Y4 419 aa10.06□□□□□ -0.8
CCDC88A-204ENST00000413716 F8P00451 2351 aa10.06□□□□□ -0.8
CCDC88A-204ENST00000413716 BEAN1Q3B7T3 259 aa10.05□□□□□ -0.8
CCDC88A-204ENST00000413716 SPINK1P00995 79 aa10.05□□□□□ -0.8
CCDC88A-204ENST00000413716 LIMD2Q9BT23 127 aa10.05□□□□□ -0.8
CCDC88A-204ENST00000413716 SYCNQ0VAF6 134 aa10.05□□□□□ -0.8
CCDC88A-204ENST00000413716 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.05□□□□□ -0.8
CCDC88A-204ENST00000413716 SPINT4Q6UDR6 99 aa10.05□□□□□ -0.8
CCDC88A-204ENST00000413716 LOC100131303A0A0U1RQF7 123 aa10.04□□□□□ -0.8
CCDC88A-204ENST00000413716 VWCEQ96DN2 955 aa10.04□□□□□ -0.8
CCDC88A-204ENST00000413716 MAP6D1Q9H9H5 199 aa10.04□□□□□ -0.8
CCDC88A-204ENST00000413716 ZFHX2Q9C0A1 2572 aaPredicted RBP10.04□□□□□ -0.8
CCDC88A-204ENST00000413716 LY6G6EA0A0G2JKS1 128 aa10.04□□□□□ -0.8
CCDC88A-204ENST00000413716 DEFB131BA0A096LNP1 70 aa10.04□□□□□ -0.8
CCDC88A-204ENST00000413716 C19orf71A6NCJ1 209 aa10.03□□□□□ -0.8
CCDC88A-204ENST00000413716 ZNF73O43830 326 aaPredicted RBP10.03□□□□□ -0.8
CCDC88A-204ENST00000413716 LOC107984640A0A0U1RRK4 108 aa10.03□□□□□ -0.8
CCDC88A-204ENST00000413716 TRBV7-7A0A0K0K1E9 115 aa10.03□□□□□ -0.8
CCDC88A-204ENST00000413716 PLAC8L1A1L4L8 177 aa10.03□□□□□ -0.8
CCDC88A-204ENST00000413716 HIVEP3Q5T1R4 2406 aa10.03□□□□□ -0.8
CCDC88A-204ENST00000413716 IGLV4-3A0A075B6K6 122 aa10.02□□□□□ -0.8
CCDC88A-204ENST00000413716 IGHV6-1A0A0B4J1U7 121 aa10.02□□□□□ -0.8
CCDC88A-204ENST00000413716 PRO0628Q9UI54 55 aa10.02□□□□□ -0.81
CCDC88A-204ENST00000413716 LINC00526Q96FQ7 95 aa10.02□□□□□ -0.81
CCDC88A-204ENST00000413716 TRBV6-8A0A0A6YYG3 113 aa10.02□□□□□ -0.81
CCDC88A-204ENST00000413716 H0Y9P7 68 aa10.01□□□□□ -0.81
CCDC88A-204ENST00000413716 SMIM11BQ8TCY0 68 aa10.01□□□□□ -0.81
CCDC88A-204ENST00000413716 RPL37AP8A6NKH3 93 aa10.01□□□□□ -0.81
CCDC88A-204ENST00000413716 TMEM254Q8TBM7 123 aa10.01□□□□□ -0.81
CCDC88A-204ENST00000413716 CIRBP-AS1Q8TBR5 109 aa10.01□□□□□ -0.81
CCDC88A-204ENST00000413716 ZNF22P17026 224 aaPredicted RBP10.01□□□□□ -0.81
CCDC88A-204ENST00000413716 LINC01547P58512 204 aaPredicted RBP10.01□□□□□ -0.81
CCDC88A-204ENST00000413716 PATE2Q6UY27 113 aa10.01□□□□□ -0.81
CCDC88A-204ENST00000413716 LINC01548A6NM66 108 aa10.01□□□□□ -0.81
CCDC88A-204ENST00000413716 Q6ZTI0 123 aa10□□□□□ -0.81
CCDC88A-204ENST00000413716 RBX1P62877 108 aa10□□□□□ -0.81
CCDC88A-204ENST00000413716 ZNF503-AS2A6NEH8 195 aa10□□□□□ -0.81
CCDC88A-204ENST00000413716 XGP55808 180 aa10□□□□□ -0.81
CCDC88A-204ENST00000413716 C17orf82Q86X59 251 aaPredicted RBP9.99□□□□□ -0.81
CCDC88A-204ENST00000413716 CD164L2Q6UWJ8 174 aa9.99□□□□□ -0.81
CCDC88A-204ENST00000413716 PROK2Q9HC23 129 aa9.99□□□□□ -0.81
CCDC88A-204ENST00000413716 TP73-AS1Q9UF72 201 aa9.99□□□□□ -0.81
CCDC88A-204ENST00000413716 MUC7Q8TAX7 377 aa9.98□□□□□ -0.81
CCDC88A-204ENST00000413716 IGLV4-69A0A075B6H9 119 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms