RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 UBE2L6O14933 153 aa7.8□□□□□ -1.16
LINC00539-201ENST00000411525 PRSS1P07477 247 aa7.8□□□□□ -1.16
LINC00539-201ENST00000411525 NPSP0C0P6 89 aa7.8□□□□□ -1.16
LINC00539-201ENST00000411525 SMAGPQ0VAQ4 97 aa7.8□□□□□ -1.16
LINC00539-201ENST00000411525 C21orf62-AS1Q17RA5 79 aa7.8□□□□□ -1.16
LINC00539-201ENST00000411525 LINC01545Q5VT33 79 aa7.8□□□□□ -1.16
LINC00539-201ENST00000411525 LGALS9CQ6DKI2 356 aa7.8□□□□□ -1.16
LINC00539-201ENST00000411525 C12orf57Q99622 126 aa7.8□□□□□ -1.16
LINC00539-201ENST00000411525 FRAS1Q86XX4 4008 aa7.79□□□□□ -1.16
LINC00539-201ENST00000411525 IGLV4-3A0A075B6K6 122 aa7.79□□□□□ -1.16
LINC00539-201ENST00000411525 TRAV12-1A0A0B4J245 112 aa7.79□□□□□ -1.16
LINC00539-201ENST00000411525 H7C423 109 aa7.79□□□□□ -1.16
LINC00539-201ENST00000411525 CDPF1Q6NVV7 123 aa7.79□□□□□ -1.16
LINC00539-201ENST00000411525 LINC00518Q8N0U6 118 aa7.79□□□□□ -1.16
LINC00539-201ENST00000411525 TIMM21Q9BVV7 248 aa7.79□□□□□ -1.16
LINC00539-201ENST00000411525 A0A087WX48 190 aa7.78□□□□□ -1.16
LINC00539-201ENST00000411525 FGF6P10767 208 aa7.78□□□□□ -1.16
LINC00539-201ENST00000411525 GAGE6Q13070 117 aa7.78□□□□□ -1.16
LINC00539-201ENST00000411525 ODF1Q14990 250 aa7.78□□□□□ -1.16
LINC00539-201ENST00000411525 PAPPA-AS1Q5QFB9 102 aa7.78□□□□□ -1.16
LINC00539-201ENST00000411525 Q6ZUT4 128 aa7.78□□□□□ -1.16
LINC00539-201ENST00000411525 MRPL52Q86TS9 123 aaKnown RBP7.78□□□□□ -1.16
LINC00539-201ENST00000411525 CHCHD5Q9BSY4 110 aa7.78□□□□□ -1.16
LINC00539-201ENST00000411525 ZNF25P17030 456 aaPredicted RBP7.77□□□□□ -1.17
LINC00539-201ENST00000411525 MRPS36P82909 103 aaKnown RBP7.77□□□□□ -1.17
LINC00539-201ENST00000411525 PMVKQ15126 192 aa7.77□□□□□ -1.17
LINC00539-201ENST00000411525 AMMECR1LQ6DCA0 310 aa7.77□□□□□ -1.17
LINC00539-201ENST00000411525 TEX43Q6ZNM6 134 aa7.77□□□□□ -1.17
LINC00539-201ENST00000411525 C15orf53Q8NAA6 179 aa7.77□□□□□ -1.17
LINC00539-201ENST00000411525 OPRPNQ99935 248 aaPredicted RBP7.77□□□□□ -1.17
LINC00539-201ENST00000411525 PMCHL2Q9BQD1 86 aa7.77□□□□□ -1.17
LINC00539-201ENST00000411525 CSDC2Q9Y534 153 aaKnown RBP7.77□□□□□ -1.17
LINC00539-201ENST00000411525 KMT2AQ03164 3969 aa7.77□□□□□ -1.17
LINC00539-201ENST00000411525 F8VRH5 84 aa7.76□□□□□ -1.17
LINC00539-201ENST00000411525 TCTAP57738 103 aa7.76□□□□□ -1.17
LINC00539-201ENST00000411525 TIRAPP58753 221 aa7.76□□□□□ -1.17
LINC00539-201ENST00000411525 ANKRD39Q53RE8 183 aa7.76□□□□□ -1.17
LINC00539-201ENST00000411525 LELP1Q5T871 98 aa7.76□□□□□ -1.17
LINC00539-201ENST00000411525 ZC2HC1BQ5TFG8 222 aa7.76□□□□□ -1.17
LINC00539-201ENST00000411525 DGAT2L7PQ6IED9 249 aa7.76□□□□□ -1.17
LINC00539-201ENST00000411525 ATOH7Q8N100 152 aa7.76□□□□□ -1.17
LINC00539-201ENST00000411525 OR5A1Q8NGJ0 315 aa7.76□□□□□ -1.17
LINC00539-201ENST00000411525 TMEM101Q96IK0 257 aa7.76□□□□□ -1.17
LINC00539-201ENST00000411525 CST9LQ9H4G1 147 aa7.76□□□□□ -1.17
LINC00539-201ENST00000411525 PRSS29PA6NIE9 313 aa7.75□□□□□ -1.17
LINC00539-201ENST00000411525 FAM104AQ969W3 186 aa7.75□□□□□ -1.17
LINC00539-201ENST00000411525 AMELXQ99217 191 aa7.75□□□□□ -1.17
LINC00539-201ENST00000411525 C2orf88Q9BSF0 95 aa7.75□□□□□ -1.17
LINC00539-201ENST00000411525 VCX2Q9H322 139 aa7.75□□□□□ -1.17
LINC00539-201ENST00000411525 MRPL35Q9NZE8 188 aaKnown RBP7.75□□□□□ -1.17
LINC00539-201ENST00000411525 CHTOPQ9Y3Y2 248 aaKnown RBP7.75□□□□□ -1.17
LINC00539-201ENST00000411525 DPM2O94777 84 aa7.74□□□□□ -1.17
LINC00539-201ENST00000411525 IGKCP01834 107 aa7.74□□□□□ -1.17
LINC00539-201ENST00000411525 PKIAP61925 76 aa7.74□□□□□ -1.17
LINC00539-201ENST00000411525 S100A12P80511 92 aa7.74□□□□□ -1.17
LINC00539-201ENST00000411525 RNASE13Q5GAN3 156 aaKnown RBP7.74□□□□□ -1.17
LINC00539-201ENST00000411525 LYPD5Q6UWN5 251 aa7.74□□□□□ -1.17
LINC00539-201ENST00000411525 VAMP8Q9BV40 100 aa7.74□□□□□ -1.17
LINC00539-201ENST00000411525 PLNP26678 52 aa7.73□□□□□ -1.17
LINC00539-201ENST00000411525 ZNF664Q8N3J9 261 aa7.73□□□□□ -1.17
LINC00539-201ENST00000411525 CDC42SE2Q9NRR3 84 aa7.73□□□□□ -1.17
LINC00539-201ENST00000411525 IGLV4-69A0A075B6H9 119 aa7.72□□□□□ -1.17
LINC00539-201ENST00000411525 TRAV9-2A0A087WT02 112 aa7.72□□□□□ -1.17
LINC00539-201ENST00000411525 TRAV8-6A0A0B4J262 113 aa7.72□□□□□ -1.17
LINC00539-201ENST00000411525 A0A1B0GUV1 79 aa7.72□□□□□ -1.17
LINC00539-201ENST00000411525 IGLL5B9A064 214 aa7.72□□□□□ -1.17
LINC00539-201ENST00000411525 TMEM262E9PQX1 116 aa7.72□□□□□ -1.17
LINC00539-201ENST00000411525 RBX1P62877 108 aa7.72□□□□□ -1.17
LINC00539-201ENST00000411525 MPV17L2Q567V2 206 aa7.72□□□□□ -1.17
LINC00539-201ENST00000411525 KRTAP17-1Q9BYP8 105 aa7.72□□□□□ -1.17
LINC00539-201ENST00000411525 PAM16Q9Y3D7 125 aa7.72□□□□□ -1.17
LINC00539-201ENST00000411525 IGLV4-60A0A075B6I1 120 aa7.71□□□□□ -1.18
LINC00539-201ENST00000411525 hDV102S1A0JD36 115 aa7.71□□□□□ -1.18
LINC00539-201ENST00000411525 HSBP1L1C9JCN9 74 aa7.71□□□□□ -1.18
LINC00539-201ENST00000411525 IGLC3P0DOY3 106 aa7.71□□□□□ -1.18
LINC00539-201ENST00000411525 ESRGQ1W209 222 aa7.71□□□□□ -1.18
LINC00539-201ENST00000411525 CHAC1Q9BUX1 264 aa7.71□□□□□ -1.18
LINC00539-201ENST00000411525 C11orf86A6NJI1 115 aa7.7□□□□□ -1.18
LINC00539-201ENST00000411525 UBE2D1P51668 147 aa7.7□□□□□ -1.18
LINC00539-201ENST00000411525 MAJINQ3KP22 176 aa7.7□□□□□ -1.18
LINC00539-201ENST00000411525 SPATA45Q537H7 98 aa7.7□□□□□ -1.18
LINC00539-201ENST00000411525 NFE4Q86UQ8 179 aa7.7□□□□□ -1.18
LINC00539-201ENST00000411525 A0A0J9YXV3 536 aa7.69□□□□□ -1.18
LINC00539-201ENST00000411525 CTAG1AP78358 180 aa7.69□□□□□ -1.18
LINC00539-201ENST00000411525 WFDC10BQ8IUB3 73 aa7.69□□□□□ -1.18
LINC00539-201ENST00000411525 Q8N3U1 123 aa7.69□□□□□ -1.18
LINC00539-201ENST00000411525 TRAV13-1A0A0B4J241 112 aa7.68□□□□□ -1.18
LINC00539-201ENST00000411525 TINCRA0A1B0GVN0 87 aa7.68□□□□□ -1.18
LINC00539-201ENST00000411525 MRPS16Q9Y3D3 137 aaKnown RBP7.68□□□□□ -1.18
LINC00539-201ENST00000411525 ANGP03950 147 aaKnown RBP7.67□□□□□ -1.18
LINC00539-201ENST00000411525 ZNF22P17026 224 aaPredicted RBP7.67□□□□□ -1.18
LINC00539-201ENST00000411525 CCL18P55774 89 aa7.67□□□□□ -1.18
LINC00539-201ENST00000411525 SEC11AP67812 179 aa7.67□□□□□ -1.18
LINC00539-201ENST00000411525 TMEM170BQ5T4T1 132 aa7.67□□□□□ -1.18
LINC00539-201ENST00000411525 FAM19A3Q7Z5A8 133 aa7.67□□□□□ -1.18
LINC00539-201ENST00000411525 STPG4Q8N801 248 aa7.67□□□□□ -1.18
LINC00539-201ENST00000411525 GEMIN7Q9H840 131 aaKnown RBP7.67□□□□□ -1.18
LINC00539-201ENST00000411525 IGKV3OR2-268A0A0C4DH90 116 aa7.66□□□□□ -1.18
LINC00539-201ENST00000411525 HERVK_113P61574 105 aa7.66□□□□□ -1.18
LINC00539-201ENST00000411525 HERVK_113P63121 156 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 154.3 ms