RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 A0A087WZ39 114 aa4.49□□□□□ -1.69
SCN1A-203ENST00000409050 SPTBN1Q01082 2364 aaKnown RBP4.49□□□□□ -1.69
SCN1A-203ENST00000409050 hDV103S1A0JD37 113 aa4.49□□□□□ -1.69
SCN1A-203ENST00000409050 CEMP1Q6PRD7 247 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-203ENST00000409050 AKAP6Q13023 2319 aa4.48□□□□□ -1.69
SCN1A-203ENST00000409050 RPL37AP8A6NKH3 93 aa4.48□□□□□ -1.69
SCN1A-203ENST00000409050 OBSL1O75147 1896 aa4.48□□□□□ -1.69
SCN1A-203ENST00000409050 CACNA1EQ15878 2313 aa4.48□□□□□ -1.69
SCN1A-203ENST00000409050 PRYO14603 147 aa4.48□□□□□ -1.69
SCN1A-203ENST00000409050 C10orf25Q5T742 122 aa4.48□□□□□ -1.69
SCN1A-203ENST00000409050 CHD3Q12873 2000 aaKnown RBP4.48□□□□□ -1.69
SCN1A-203ENST00000409050 WNK2Q9Y3S1 2297 aa4.48□□□□□ -1.69
SCN1A-203ENST00000409050 CNOT1A5YKK6 2376 aaKnown RBP4.48□□□□□ -1.69
SCN1A-203ENST00000409050 H3BPC8 53 aa4.47□□□□□ -1.69
SCN1A-203ENST00000409050 Q6ZPA2 131 aa4.47□□□□□ -1.69
SCN1A-203ENST00000409050 Q6ZSV7 163 aa4.47□□□□□ -1.69
SCN1A-203ENST00000409050 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-203ENST00000409050 MPLKIPQ8TAP9 179 aa4.47□□□□□ -1.69
SCN1A-203ENST00000409050 DOCK10Q96BY6 2186 aa4.47□□□□□ -1.69
SCN1A-203ENST00000409050 COL4A3Q01955 1670 aa4.47□□□□□ -1.69
SCN1A-203ENST00000409050 CXCL6P80162 114 aa4.47□□□□□ -1.69
SCN1A-203ENST00000409050 AMELXQ99217 191 aa4.47□□□□□ -1.69
SCN1A-203ENST00000409050 ZNF702PQ9H963 129 aa4.47□□□□□ -1.69
SCN1A-203ENST00000409050 TNRC6BQ9UPQ9 1833 aaKnown RBP4.47□□□□□ -1.69
SCN1A-203ENST00000409050 A0A1B0GUV1 79 aa4.47□□□□□ -1.69
SCN1A-203ENST00000409050 Q8N814 137 aa4.47□□□□□ -1.69
SCN1A-203ENST00000409050 TMEM131Q92545 1883 aa4.47□□□□□ -1.69
SCN1A-203ENST00000409050 WFDC10AQ9H1F0 79 aa4.47□□□□□ -1.69
SCN1A-203ENST00000409050 XGP55808 180 aa4.47□□□□□ -1.69
SCN1A-203ENST00000409050 C1orf158Q8N1D5 194 aa4.47□□□□□ -1.69
SCN1A-203ENST00000409050 DCANP1Q8TF63 244 aa4.47□□□□□ -1.69
SCN1A-203ENST00000409050 TRBV7-7A0A0K0K1E9 115 aa4.46□□□□□ -1.7
SCN1A-203ENST00000409050 BEAN1Q3B7T3 259 aa4.46□□□□□ -1.7
SCN1A-203ENST00000409050 DENND4CQ5VZ89 1909 aa4.46□□□□□ -1.7
SCN1A-203ENST00000409050 PLXND1Q9Y4D7 1925 aa4.46□□□□□ -1.7
SCN1A-203ENST00000409050 IGKV2-24A0A0C4DH68 120 aa4.46□□□□□ -1.7
SCN1A-203ENST00000409050 LINC01546A6NGU7 62 aa4.45□□□□□ -1.7
SCN1A-203ENST00000409050 WFDC10BQ8IUB3 73 aa4.45□□□□□ -1.7
SCN1A-203ENST00000409050 SPTBN2O15020 2390 aa4.45□□□□□ -1.7
SCN1A-203ENST00000409050 ZNF407Q9C0G0 2248 aa4.45□□□□□ -1.7
SCN1A-203ENST00000409050 TRBV7-6A0A0J9YX20 115 aa4.45□□□□□ -1.7
SCN1A-203ENST00000409050 LIMD2Q9BT23 127 aa4.45□□□□□ -1.7
SCN1A-203ENST00000409050 RPS28P62857 69 aaKnown RBP4.45□□□□□ -1.7
SCN1A-203ENST00000409050 LINC00242Q5T6M2 205 aa4.45□□□□□ -1.7
SCN1A-203ENST00000409050 KPRPQ5T749 579 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-203ENST00000409050 FAM30AQ9NZY2 134 aa4.45□□□□□ -1.7
SCN1A-203ENST00000409050 SHANK1Q9Y566 2161 aa4.45□□□□□ -1.7
SCN1A-203ENST00000409050 LTBP2Q14767 1821 aa4.45□□□□□ -1.7
SCN1A-203ENST00000409050 ABCA4P78363 2273 aa4.45□□□□□ -1.7
SCN1A-203ENST00000409050 SMIM1B2RUZ4 78 aa4.45□□□□□ -1.7
SCN1A-203ENST00000409050 POLEQ07864 2286 aa4.45□□□□□ -1.7
SCN1A-203ENST00000409050 PPDPFQ9H3Y8 114 aa4.44□□□□□ -1.7
SCN1A-203ENST00000409050 ACACAQ13085 2346 aa4.44□□□□□ -1.7
SCN1A-203ENST00000409050 MED12Q93074 2177 aa4.44□□□□□ -1.7
SCN1A-203ENST00000409050 NUPR2A6NF83 97 aa4.44□□□□□ -1.7
SCN1A-203ENST00000409050 SLPIP03973 132 aa4.44□□□□□ -1.7
SCN1A-203ENST00000409050 FAM19A5Q7Z5A7 132 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-203ENST00000409050 ADAMTS9Q9P2N4 1935 aa4.44□□□□□ -1.7
SCN1A-203ENST00000409050 C16orf95Q9H693 158 aa4.44□□□□□ -1.7
SCN1A-203ENST00000409050 TP53AIP1Q9HCN2 124 aa4.44□□□□□ -1.7
SCN1A-203ENST00000409050 ESM1Q9NQ30 184 aa4.44□□□□□ -1.7
SCN1A-203ENST00000409050 COL4A4P53420 1690 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-203ENST00000409050 A0A1W2PNU3 283 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-203ENST00000409050 C10orf142B7Z368 130 aa4.44□□□□□ -1.7
SCN1A-203ENST00000409050 C1orf137Q5JT78 98 aa4.44□□□□□ -1.7
SCN1A-203ENST00000409050 Q8N2B8 174 aa4.44□□□□□ -1.7
SCN1A-203ENST00000409050 CACNA1BQ00975 2339 aa4.44□□□□□ -1.7
SCN1A-203ENST00000409050 PLAC8L1A1L4L8 177 aa4.43□□□□□ -1.7
SCN1A-203ENST00000409050 BBC3Q96PG8 261 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-203ENST00000409050 RIF1Q5UIP0 2472 aaKnown RBP4.43□□□□□ -1.7
SCN1A-203ENST00000409050 C1orf229Q6ZS94 237 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-203ENST00000409050 CCDC179H3BU77 68 aa4.43□□□□□ -1.7
SCN1A-203ENST00000409050 XAGE1AQ9HD64 81 aa4.43□□□□□ -1.7
SCN1A-203ENST00000409050 DEFB1P60022 68 aa4.42□□□□□ -1.7
SCN1A-203ENST00000409050 REG3GQ6UW15 175 aa4.42□□□□□ -1.7
SCN1A-203ENST00000409050 C11orf21Q9P2W6 132 aa4.42□□□□□ -1.7
SCN1A-203ENST00000409050 NUP210LQ5VU65 1888 aa4.42□□□□□ -1.7
SCN1A-203ENST00000409050 CYSRT1A8MQ03 144 aa4.42□□□□□ -1.7
SCN1A-203ENST00000409050 GTF3C1Q12789 2109 aa4.42□□□□□ -1.7
SCN1A-203ENST00000409050 POM121L12Q8N7R1 296 aa4.42□□□□□ -1.7
SCN1A-203ENST00000409050 PRB1P04280 392 aa4.42□□□□□ -1.7
SCN1A-203ENST00000409050 LINC00482Q8N8I6 264 aa4.42□□□□□ -1.7
SCN1A-203ENST00000409050 CELA1Q9UNI1 258 aa4.42□□□□□ -1.7
SCN1A-203ENST00000409050 C3orf84H3BNL1 204 aa4.42□□□□□ -1.7
SCN1A-203ENST00000409050 SCXQ7RTU7 201 aa4.42□□□□□ -1.7
SCN1A-203ENST00000409050 WFDC13Q8IUB5 93 aa4.42□□□□□ -1.7
SCN1A-203ENST00000409050 USF3Q68DE3 2245 aa4.41□□□□□ -1.7
SCN1A-203ENST00000409050 LINC01006Q8NI28 216 aa4.41□□□□□ -1.7
SCN1A-203ENST00000409050 DYSFO75923 2080 aa4.41□□□□□ -1.7
SCN1A-203ENST00000409050 HCG22E2RYF7 251 aa4.41□□□□□ -1.7
SCN1A-203ENST00000409050 SNURFQ9Y675 71 aa4.41□□□□□ -1.7
SCN1A-203ENST00000409050 DEFB4AO15263 64 aa4.41□□□□□ -1.7
SCN1A-203ENST00000409050 IGLV1-51P01701 117 aa4.41□□□□□ -1.7
SCN1A-203ENST00000409050 Q6ZS46 218 aa4.41□□□□□ -1.7
SCN1A-203ENST00000409050 SPTAN1Q13813 2472 aaKnown RBP4.41□□□□□ -1.7
SCN1A-203ENST00000409050 LINC00694P0DN24 101 aa4.4□□□□□ -1.7
SCN1A-203ENST00000409050 PRR9Q5T870 116 aa4.4□□□□□ -1.7
SCN1A-203ENST00000409050 CRYGAP11844 174 aa4.4□□□□□ -1.7
SCN1A-203ENST00000409050 PKDREJQ9NTG1 2253 aa4.4□□□□□ -1.7
SCN1A-203ENST00000409050 IGLV2-18A0A075B6J9 118 aa4.4□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms