RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 LRP1Q07954 4544 aaKnown RBP18.59■□□□□ 0.57
HMGB1-205ENST00000399494 IMMP2LQ96T52 175 aa18.58■□□□□ 0.56
HMGB1-205ENST00000399494 KIR2DL4Q99706 377 aa18.57■□□□□ 0.56
HMGB1-205ENST00000399494 TNFRSF6BO95407 300 aa18.56■□□□□ 0.56
HMGB1-205ENST00000399494 PPBPP02775 128 aa18.56■□□□□ 0.56
HMGB1-205ENST00000399494 CIRBP-AS1Q8TBR5 109 aa18.56■□□□□ 0.56
HMGB1-205ENST00000399494 C20orf78Q9BR46 151 aa18.56■□□□□ 0.56
HMGB1-205ENST00000399494 FGF6P10767 208 aa18.55■□□□□ 0.56
HMGB1-205ENST00000399494 TRBV24-1A0A075B6N3 115 aa18.54■□□□□ 0.56
HMGB1-205ENST00000399494 HLA-DQA1P01909 254 aa18.54■□□□□ 0.56
HMGB1-205ENST00000399494 C10orf91Q5T1B1 145 aa18.54■□□□□ 0.56
HMGB1-205ENST00000399494 SERTAD4-AS1Q5TG53 156 aa18.54■□□□□ 0.56
HMGB1-205ENST00000399494 ORMDL3Q8N138 153 aa18.54■□□□□ 0.56
HMGB1-205ENST00000399494 CARHSP1Q9Y2V2 147 aaKnown RBP18.54■□□□□ 0.56
HMGB1-205ENST00000399494 C7orf77A4D0Y5 90 aa18.53■□□□□ 0.56
HMGB1-205ENST00000399494 ESDP10768 282 aa18.53■□□□□ 0.56
HMGB1-205ENST00000399494 S100PP25815 95 aa18.53■□□□□ 0.56
HMGB1-205ENST00000399494 TMEM101Q96IK0 257 aa18.53■□□□□ 0.56
HMGB1-205ENST00000399494 IGLV10-54A0A075B6I4 117 aa18.52■□□□□ 0.56
HMGB1-205ENST00000399494 NPYP01303 97 aa18.52■□□□□ 0.56
HMGB1-205ENST00000399494 ZNF25P17030 456 aaPredicted RBP18.52■□□□□ 0.56
HMGB1-205ENST00000399494 TMEM136Q6ZRR5 245 aa18.52■□□□□ 0.56
HMGB1-205ENST00000399494 TRAV8-4A0A0B4J246 113 aa18.51■□□□□ 0.55
HMGB1-205ENST00000399494 IGKV3OR2-268A0A0C4DH90 116 aa18.5■□□□□ 0.55
HMGB1-205ENST00000399494 PHOX2AO14813 284 aa18.5■□□□□ 0.55
HMGB1-205ENST00000399494 OXTP01178 125 aa18.5■□□□□ 0.55
HMGB1-205ENST00000399494 RPL32P62910 135 aaKnown RBP18.5■□□□□ 0.55
HMGB1-205ENST00000399494 PRELID3AQ96N28 172 aa18.5■□□□□ 0.55
HMGB1-205ENST00000399494 SMIM2Q9BVW6 85 aa18.5■□□□□ 0.55
HMGB1-205ENST00000399494 TRAV9-1A0A075B6T8 112 aa18.49■□□□□ 0.55
HMGB1-205ENST00000399494 RHEBQ15382 184 aa18.49■□□□□ 0.55
HMGB1-205ENST00000399494 CLRN3Q8NCR9 226 aa18.49■□□□□ 0.55
HMGB1-205ENST00000399494 RPS10P5Q9NQ39 176 aa18.49■□□□□ 0.55
HMGB1-205ENST00000399494 FAT3Q8TDW7 4589 aa18.49■□□□□ 0.55
HMGB1-205ENST00000399494 TCAPO15273 167 aa18.48■□□□□ 0.55
HMGB1-205ENST00000399494 OR5A1Q8NGJ0 315 aa18.48■□□□□ 0.55
HMGB1-205ENST00000399494 HMCN2Q8NDA2 5059 aa18.48■□□□□ 0.55
HMGB1-205ENST00000399494 NDUFA5Q16718 116 aa18.47■□□□□ 0.55
HMGB1-205ENST00000399494 SMAGPQ0VAQ4 97 aa18.46■□□□□ 0.55
HMGB1-205ENST00000399494 APOC3P02656 99 aa18.45■□□□□ 0.54
HMGB1-205ENST00000399494 C14orf177Q52M58 125 aa18.45■□□□□ 0.54
HMGB1-205ENST00000399494 DGAT2L7PQ6IED9 249 aa18.45■□□□□ 0.54
HMGB1-205ENST00000399494 TMEM18Q96B42 140 aa18.45■□□□□ 0.54
HMGB1-205ENST00000399494 LAMTOR2Q9Y2Q5 125 aa18.45■□□□□ 0.54
HMGB1-205ENST00000399494 MRPL52Q86TS9 123 aaKnown RBP18.44■□□□□ 0.54
HMGB1-205ENST00000399494 USP17L23D6RBM5 183 aa18.42■□□□□ 0.54
HMGB1-205ENST00000399494 KRTAP26-1Q6PEX3 210 aa18.42■□□□□ 0.54
HMGB1-205ENST00000399494 MAP1LC3AQ9H492 121 aa18.42■□□□□ 0.54
HMGB1-205ENST00000399494 RAB5AP20339 215 aa18.41■□□□□ 0.54
HMGB1-205ENST00000399494 SNAPINO95295 136 aa18.4■□□□□ 0.54
HMGB1-205ENST00000399494 LOC389332A0A1B0GUA5 103 aa18.39■□□□□ 0.53
HMGB1-205ENST00000399494 SVBPQ8N300 66 aa18.39■□□□□ 0.53
HMGB1-205ENST00000399494 PKHD1L1Q86WI1 4243 aa18.39■□□□□ 0.53
HMGB1-205ENST00000399494 ZNF664Q8N3J9 261 aa18.38■□□□□ 0.53
HMGB1-205ENST00000399494 CDC42SE2Q9NRR3 84 aa18.38■□□□□ 0.53
HMGB1-205ENST00000399494 UBE2D4Q9Y2X8 147 aa18.38■□□□□ 0.53
HMGB1-205ENST00000399494 GAGE12HA6NDE8 117 aa18.37■□□□□ 0.53
HMGB1-205ENST00000399494 CHCHD10Q8WYQ3 142 aaPredicted RBP18.37■□□□□ 0.53
HMGB1-205ENST00000399494 COX19Q49B96 90 aa18.36■□□□□ 0.53
HMGB1-205ENST00000399494 CSDC2Q9Y534 153 aaKnown RBP18.36■□□□□ 0.53
HMGB1-205ENST00000399494 PRSS47A8MTI9 375 aa18.35■□□□□ 0.53
HMGB1-205ENST00000399494 RPL37AP61513 92 aaKnown RBP18.35■□□□□ 0.53
HMGB1-205ENST00000399494 GNB1LQ9BYB4 327 aa18.35■□□□□ 0.53
HMGB1-205ENST00000399494 PRSS1P07477 247 aa18.34■□□□□ 0.53
HMGB1-205ENST00000399494 RPL39P62891 51 aaKnown RBP18.34■□□□□ 0.53
HMGB1-205ENST00000399494 SS18Q15532 418 aa18.34■□□□□ 0.53
HMGB1-205ENST00000399494 KIAA1644Q3SXP7 199 aa18.34■□□□□ 0.53
HMGB1-205ENST00000399494 TIMM21Q9BVV7 248 aa18.34■□□□□ 0.53
HMGB1-205ENST00000399494 LINC00959A0A1B0GUT2 108 aa18.33■□□□□ 0.52
HMGB1-205ENST00000399494 HNRNPA3P51991 378 aaKnown RBP18.33■□□□□ 0.52
HMGB1-205ENST00000399494 UBR4Q5T4S7 5183 aa18.32■□□□□ 0.52
HMGB1-205ENST00000399494 Q8N8P6 123 aa18.32■□□□□ 0.52
HMGB1-205ENST00000399494 PLA2G2DQ9UNK4 145 aa18.32■□□□□ 0.52
HMGB1-205ENST00000399494 XCL1P47992 114 aa18.31■□□□□ 0.52
HMGB1-205ENST00000399494 RNASE13Q5GAN3 156 aaKnown RBP18.31■□□□□ 0.52
HMGB1-205ENST00000399494 C9orf163Q8N9P6 203 aa18.31■□□□□ 0.52
HMGB1-205ENST00000399494 CCL25O15444 150 aa18.3■□□□□ 0.52
HMGB1-205ENST00000399494 MT-ND6P03923 174 aa18.3■□□□□ 0.52
HMGB1-205ENST00000399494 Q6ZUT4 128 aa18.3■□□□□ 0.52
HMGB1-205ENST00000399494 SPANXA1Q9NS26 97 aa18.3■□□□□ 0.52
HMGB1-205ENST00000399494 hDV102S1A0JD36 115 aa18.29■□□□□ 0.52
HMGB1-205ENST00000399494 NXT2Q9NPJ8 142 aaKnown RBP18.29■□□□□ 0.52
HMGB1-205ENST00000399494 CFAP161Q6P656 301 aa18.28■□□□□ 0.52
HMGB1-205ENST00000399494 MRPL18Q9H0U6 180 aaKnown RBP18.27■□□□□ 0.52
HMGB1-205ENST00000399494 TGIF2-C20orf24A0A0A6YYL0 155 aa18.26■□□□□ 0.51
HMGB1-205ENST00000399494 IFI27P40305 119 aaPredicted RBP18.26■□□□□ 0.51
HMGB1-205ENST00000399494 FABP9Q0Z7S8 132 aa18.26■□□□□ 0.51
HMGB1-205ENST00000399494 ORMDL2Q53FV1 153 aa18.26■□□□□ 0.51
HMGB1-205ENST00000399494 AP5S1Q9NUS5 200 aa18.26■□□□□ 0.51
HMGB1-205ENST00000399494 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP18.26■□□□□ 0.51
HMGB1-205ENST00000399494 TRAV13-1A0A0B4J241 112 aa18.25■□□□□ 0.51
HMGB1-205ENST00000399494 C1orf196B1AJZ1 125 aa18.25■□□□□ 0.51
HMGB1-205ENST00000399494 K7EMI3 77 aa18.25■□□□□ 0.51
HMGB1-205ENST00000399494 FOXI1Q12951 378 aa18.25■□□□□ 0.51
HMGB1-205ENST00000399494 SDIM1Q6ZPB5 146 aa18.25■□□□□ 0.51
HMGB1-205ENST00000399494 PANO1I0J062 215 aa18.24■□□□□ 0.51
HMGB1-205ENST00000399494 SLC7A5P1Q8MH63 180 aa18.23■□□□□ 0.51
HMGB1-205ENST00000399494 CYSLTR1Q9Y271 337 aa18.23■□□□□ 0.51
HMGB1-205ENST00000399494 MRPS36P82909 103 aaKnown RBP18.22■□□□□ 0.51
HMGB1-205ENST00000399494 CD164L2Q6UWJ8 174 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms