RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 EP300Q09472 2414 aaPredicted RBP2.42□□□□□ -2.02
HMGB1-204ENST00000399489 A0A1B0GUL6 1792 aa2.42□□□□□ -2.02
HMGB1-204ENST00000399489 GPR179Q6PRD1 2367 aa2.42□□□□□ -2.02
HMGB1-204ENST00000399489 LOC400499M0QZD8 3231 aa2.42□□□□□ -2.02
HMGB1-204ENST00000399489 C9orf116Q5BN46 136 aaPredicted RBP2.42□□□□□ -2.02
HMGB1-204ENST00000399489 TMEM170BQ5T4T1 132 aa2.42□□□□□ -2.02
HMGB1-204ENST00000399489 LINC00643Q86TS7 51 aa2.42□□□□□ -2.02
HMGB1-204ENST00000399489 CYYR1Q96J86 154 aa2.42□□□□□ -2.02
HMGB1-204ENST00000399489 C20orf166-AS1Q96NR2 134 aa2.42□□□□□ -2.02
HMGB1-204ENST00000399489 CYP4F30PQ9H0H9 118 aa2.42□□□□□ -2.02
HMGB1-204ENST00000399489 USP24Q9UPU5 2620 aa2.41□□□□□ -2.02
HMGB1-204ENST00000399489 FRYLO94915 3013 aa2.41□□□□□ -2.02
HMGB1-204ENST00000399489 IGKV1D-42A0A075B6H8 117 aa2.41□□□□□ -2.02
HMGB1-204ENST00000399489 A0A0G2JND7 137 aa2.41□□□□□ -2.02
HMGB1-204ENST00000399489 A0A0J9YX75 114 aa2.41□□□□□ -2.02
HMGB1-204ENST00000399489 TRBV10-3A0A0K0K1G6 114 aa2.41□□□□□ -2.02
HMGB1-204ENST00000399489 RTL8CO15255 209 aa2.41□□□□□ -2.02
HMGB1-204ENST00000399489 BCE1O60756 84 aa2.41□□□□□ -2.02
HMGB1-204ENST00000399489 KRTAP1-4P0C5Y4 121 aa2.41□□□□□ -2.02
HMGB1-204ENST00000399489 PRB4P10163 310 aaPredicted RBP2.41□□□□□ -2.02
HMGB1-204ENST00000399489 EFNA4P52798 201 aa2.41□□□□□ -2.02
HMGB1-204ENST00000399489 SPANXN5Q5MJ07 72 aa2.41□□□□□ -2.02
HMGB1-204ENST00000399489 MANBALQ9NQG1 85 aa2.41□□□□□ -2.02
HMGB1-204ENST00000399489 CEP250Q9BV73 2442 aa2.41□□□□□ -2.02
HMGB1-204ENST00000399489 A0A0G2JMZ2 1700 aa2.41□□□□□ -2.02
HMGB1-204ENST00000399489 SPTBN2O15020 2390 aa2.41□□□□□ -2.02
HMGB1-204ENST00000399489 NYNRINQ9P2P1 1898 aaKnown RBP2.41□□□□□ -2.02
HMGB1-204ENST00000399489 PLXNA1Q9UIW2 1896 aa2.41□□□□□ -2.02
HMGB1-204ENST00000399489 THADAQ6YHU6 1953 aa2.4□□□□□ -2.02
HMGB1-204ENST00000399489 SNRNP200O75643 2136 aaKnown RBP2.4□□□□□ -2.02
HMGB1-204ENST00000399489 LAMA5O15230 3695 aa2.4□□□□□ -2.02
HMGB1-204ENST00000399489 ANKRD11Q6UB99 2663 aaPredicted RBP2.4□□□□□ -2.02
HMGB1-204ENST00000399489 COL4A6Q14031 1691 aa2.4□□□□□ -2.02
HMGB1-204ENST00000399489 HCG22E2RYF7 251 aa2.4□□□□□ -2.02
HMGB1-204ENST00000399489 H7BZZ5 65 aa2.4□□□□□ -2.02
HMGB1-204ENST00000399489 DSCR4P56555 118 aaPredicted RBP2.4□□□□□ -2.02
HMGB1-204ENST00000399489 LYPD5Q6UWN5 251 aa2.4□□□□□ -2.02
HMGB1-204ENST00000399489 TIMM21Q9BVV7 248 aa2.4□□□□□ -2.02
HMGB1-204ENST00000399489 HIGD2AQ9BW72 106 aa2.4□□□□□ -2.02
HMGB1-204ENST00000399489 KLK12Q9UKR0 248 aa2.4□□□□□ -2.02
HMGB1-204ENST00000399489 UNC79Q9P2D8 2635 aa2.4□□□□□ -2.02
HMGB1-204ENST00000399489 ZNF236Q9UL36 1845 aa2.4□□□□□ -2.03
HMGB1-204ENST00000399489 ZNF292O60281 2723 aa2.4□□□□□ -2.03
HMGB1-204ENST00000399489 WDR87Q6ZQQ6 2873 aa2.4□□□□□ -2.03
HMGB1-204ENST00000399489 MAP1BP46821 2468 aaKnown RBP2.4□□□□□ -2.03
HMGB1-204ENST00000399489 CELSR3Q9NYQ7 3312 aa2.4□□□□□ -2.03
HMGB1-204ENST00000399489 FAM208BQ5VWN6 2430 aa2.4□□□□□ -2.03
HMGB1-204ENST00000399489 ZFYVE26Q68DK2 2539 aa2.4□□□□□ -2.03
HMGB1-204ENST00000399489 DOCK2Q92608 1830 aa2.4□□□□□ -2.03
HMGB1-204ENST00000399489 TRBV7-1A0A0A6YYK4 115 aa2.39□□□□□ -2.03
HMGB1-204ENST00000399489 E7EUB6 86 aa2.39□□□□□ -2.03
HMGB1-204ENST00000399489 ZZEF1O43149 2961 aa2.39□□□□□ -2.03
HMGB1-204ENST00000399489 ZNF826PQ6ZT77 177 aa2.39□□□□□ -2.03
HMGB1-204ENST00000399489 FLNBO75369 2602 aaKnown RBP2.39□□□□□ -2.03
HMGB1-204ENST00000399489 LCTP09848 1927 aa2.39□□□□□ -2.03
HMGB1-204ENST00000399489 PATJQ8NI35 1801 aa2.39□□□□□ -2.03
HMGB1-204ENST00000399489 PLXNA3P51805 1871 aa2.39□□□□□ -2.03
HMGB1-204ENST00000399489 KLKP1Q107X0 134 aa2.39□□□□□ -2.03
HMGB1-204ENST00000399489 ZNF56Q15929 161 aa2.39□□□□□ -2.03
HMGB1-204ENST00000399489 ZNF791Q3KP31 576 aaPredicted RBP2.39□□□□□ -2.03
HMGB1-204ENST00000399489 OTOGLQ3ZCN5 2332 aa2.39□□□□□ -2.03
HMGB1-204ENST00000399489 XAF1Q6GPH4 301 aa2.39□□□□□ -2.03
HMGB1-204ENST00000399489 TMEM254Q8TBM7 123 aa2.39□□□□□ -2.03
HMGB1-204ENST00000399489 CDC42SE1Q9NRR8 79 aa2.39□□□□□ -2.03
HMGB1-204ENST00000399489 SETXQ7Z333 2677 aaKnown RBP2.38□□□□□ -2.03
HMGB1-204ENST00000399489 FRYQ5TBA9 3013 aa2.38□□□□□ -2.03
HMGB1-204ENST00000399489 IGLV10-54A0A075B6I4 117 aa2.38□□□□□ -2.03
HMGB1-204ENST00000399489 A0A087WSZ3 146 aa2.38□□□□□ -2.03
HMGB1-204ENST00000399489 PSCAO43653 123 aa2.38□□□□□ -2.03
HMGB1-204ENST00000399489 BAALC-AS2P0C853 105 aa2.38□□□□□ -2.03
HMGB1-204ENST00000399489 PSMG4Q5JS54 123 aa2.38□□□□□ -2.03
HMGB1-204ENST00000399489 DYNLRB1Q9NP97 96 aa2.38□□□□□ -2.03
HMGB1-204ENST00000399489 PRO1854Q9UHT4 67 aa2.38□□□□□ -2.03
HMGB1-204ENST00000399489 PTPRSQ13332 1948 aa2.38□□□□□ -2.03
HMGB1-204ENST00000399489 BPTFQ12830 3046 aa2.38□□□□□ -2.03
HMGB1-204ENST00000399489 MAST4O15021 2626 aa2.38□□□□□ -2.03
HMGB1-204ENST00000399489 MALRD1Q5VYJ5 2156 aa2.37□□□□□ -2.03
HMGB1-204ENST00000399489 IGLV3-16A0A075B6K0 115 aa2.37□□□□□ -2.03
HMGB1-204ENST00000399489 ODF3BA8MYP8 253 aa2.37□□□□□ -2.03
HMGB1-204ENST00000399489 LOC730098B7Z3J9 87 aa2.37□□□□□ -2.03
HMGB1-204ENST00000399489 ERC2-IT1O76042 136 aa2.37□□□□□ -2.03
HMGB1-204ENST00000399489 COX8AP10176 69 aa2.37□□□□□ -2.03
HMGB1-204ENST00000399489 DEFB103AP81534 67 aa2.37□□□□□ -2.03
HMGB1-204ENST00000399489 MIR22HGQ0VDD5 57 aa2.37□□□□□ -2.03
HMGB1-204ENST00000399489 ZCCHC23Q6ZST2 131 aa2.37□□□□□ -2.03
HMGB1-204ENST00000399489 C6orf201Q7Z4U5 140 aa2.37□□□□□ -2.03
HMGB1-204ENST00000399489 VMO1Q7Z5L0 202 aa2.37□□□□□ -2.03
HMGB1-204ENST00000399489 TVP23CQ96ET8 276 aa2.37□□□□□ -2.03
HMGB1-204ENST00000399489 FAM167A-AS1Q96KT0 104 aa2.37□□□□□ -2.03
HMGB1-204ENST00000399489 ASH1LQ9NR48 2969 aaKnown RBP2.37□□□□□ -2.03
HMGB1-204ENST00000399489 GBF1Q92538 1859 aa2.37□□□□□ -2.03
HMGB1-204ENST00000399489 COL4A4P53420 1690 aaPredicted RBP2.37□□□□□ -2.03
HMGB1-204ENST00000399489 FREM2Q5SZK8 3169 aa2.37□□□□□ -2.03
HMGB1-204ENST00000399489 IGLV2-18A0A075B6J9 118 aa2.37□□□□□ -2.03
HMGB1-204ENST00000399489 TRAV40A0A0B4J280 105 aa2.37□□□□□ -2.03
HMGB1-204ENST00000399489 MIFP14174 115 aa2.37□□□□□ -2.03
HMGB1-204ENST00000399489 UBE2D3P61077 147 aa2.37□□□□□ -2.03
HMGB1-204ENST00000399489 UBE2D2P62837 147 aa2.37□□□□□ -2.03
HMGB1-204ENST00000399489 FAM223AQ8IWN6 122 aa2.37□□□□□ -2.03
HMGB1-204ENST00000399489 Q8N6K4 173 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms