RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 RPL36AP83881 106 aaKnown RBP7.19□□□□□ -1.26
COL17A1-203ENST00000393211 SHISA2Q6UWI4 295 aa7.19□□□□□ -1.26
COL17A1-203ENST00000393211 CLEC2BQ92478 149 aa7.19□□□□□ -1.26
COL17A1-203ENST00000393211 RPL36ALQ969Q0 106 aaKnown RBP7.19□□□□□ -1.26
COL17A1-203ENST00000393211 Q9H8V8 135 aa7.19□□□□□ -1.26
COL17A1-203ENST00000393211 IGHV3-38A0A0C4DH36 116 aa7.18□□□□□ -1.26
COL17A1-203ENST00000393211 TRACP01848 142 aa7.18□□□□□ -1.26
COL17A1-203ENST00000393211 PF4P02776 101 aa7.18□□□□□ -1.26
COL17A1-203ENST00000393211 IGHV4-31P0DP07 118 aa7.18□□□□□ -1.26
COL17A1-203ENST00000393211 COX6A2Q02221 97 aa7.18□□□□□ -1.26
COL17A1-203ENST00000393211 PKD1L2Q7Z442 2459 aa7.17□□□□□ -1.26
COL17A1-203ENST00000393211 RELNP78509 3460 aa7.17□□□□□ -1.26
COL17A1-203ENST00000393211 TRBV7-7A0A0K0K1E9 115 aa7.17□□□□□ -1.26
COL17A1-203ENST00000393211 GAGE12JA6NER3 117 aa7.17□□□□□ -1.26
COL17A1-203ENST00000393211 SMIM1B2RUZ4 78 aa7.17□□□□□ -1.26
COL17A1-203ENST00000393211 K7EQD1 137 aa7.17□□□□□ -1.26
COL17A1-203ENST00000393211 GAGE7O76087 117 aa7.17□□□□□ -1.26
COL17A1-203ENST00000393211 GAGE12FP0CL80 117 aa7.17□□□□□ -1.26
COL17A1-203ENST00000393211 GAGE12GP0CL81 117 aa7.17□□□□□ -1.26
COL17A1-203ENST00000393211 GAGE12IP0CL82 117 aa7.17□□□□□ -1.26
COL17A1-203ENST00000393211 NPC2P61916 151 aa7.17□□□□□ -1.26
COL17A1-203ENST00000393211 GAGE4Q13068 117 aa7.17□□□□□ -1.26
COL17A1-203ENST00000393211 DEFB136Q30KP8 78 aa7.17□□□□□ -1.26
COL17A1-203ENST00000393211 C18orf65Q6ZTR6 163 aa7.17□□□□□ -1.26
COL17A1-203ENST00000393211 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.17□□□□□ -1.26
COL17A1-203ENST00000393211 ZNF625Q96I27 306 aaPredicted RBP7.17□□□□□ -1.26
COL17A1-203ENST00000393211 IMUPQ9GZP8 106 aa7.17□□□□□ -1.26
COL17A1-203ENST00000393211 PRM2P04554 102 aa7.16□□□□□ -1.26
COL17A1-203ENST00000393211 CMC4P56277 68 aaPredicted RBP7.16□□□□□ -1.26
COL17A1-203ENST00000393211 Q6ZSV7 163 aa7.16□□□□□ -1.26
COL17A1-203ENST00000393211 TMEM86BQ8N661 226 aa7.16□□□□□ -1.26
COL17A1-203ENST00000393211 ITPR1Q14643 2758 aa7.16□□□□□ -1.26
COL17A1-203ENST00000393211 F5H768 121 aa7.16□□□□□ -1.26
COL17A1-203ENST00000393211 STHQ8IWL8 128 aa7.16□□□□□ -1.26
COL17A1-203ENST00000393211 CDC42SE2Q9NRR3 84 aa7.16□□□□□ -1.26
COL17A1-203ENST00000393211 ASH1LQ9NR48 2969 aaKnown RBP7.15□□□□□ -1.26
COL17A1-203ENST00000393211 FAM222AQ5U5X8 452 aa7.15□□□□□ -1.27
COL17A1-203ENST00000393211 PRIMA1Q86XR5 153 aa7.15□□□□□ -1.27
COL17A1-203ENST00000393211 C1orf158Q8N1D5 194 aa7.15□□□□□ -1.27
COL17A1-203ENST00000393211 DAND5Q8N907 189 aa7.15□□□□□ -1.27
COL17A1-203ENST00000393211 EPG5Q9HCE0 2579 aa7.14□□□□□ -1.27
COL17A1-203ENST00000393211 TRGV1A0A0A0MS02 117 aa7.14□□□□□ -1.27
COL17A1-203ENST00000393211 ODF3L2Q3SX64 289 aa7.14□□□□□ -1.27
COL17A1-203ENST00000393211 MEIG1Q5JSS6 88 aa7.14□□□□□ -1.27
COL17A1-203ENST00000393211 CFAP161Q6P656 301 aa7.14□□□□□ -1.27
COL17A1-203ENST00000393211 LRRC75A-AS1Q8N1F1 130 aa7.14□□□□□ -1.27
COL17A1-203ENST00000393211 NRGNQ92686 78 aa7.14□□□□□ -1.27
COL17A1-203ENST00000393211 OVOL2Q9BRP0 275 aa7.14□□□□□ -1.27
COL17A1-203ENST00000393211 XCL2Q9UBD3 114 aa7.14□□□□□ -1.27
COL17A1-203ENST00000393211 TRAV13-2A0A0B4J235 113 aa7.13□□□□□ -1.27
COL17A1-203ENST00000393211 LINC00694P0DN24 101 aa7.13□□□□□ -1.27
COL17A1-203ENST00000393211 SOSTDC1Q6X4U4 206 aa7.13□□□□□ -1.27
COL17A1-203ENST00000393211 NTM-AS1Q6ZSK4 140 aa7.13□□□□□ -1.27
COL17A1-203ENST00000393211 TMEM243Q9BU79 118 aa7.13□□□□□ -1.27
COL17A1-203ENST00000393211 ZFYVE26Q68DK2 2539 aa7.13□□□□□ -1.27
COL17A1-203ENST00000393211 HIST2H2BCQ6DN03 193 aa7.12□□□□□ -1.27
COL17A1-203ENST00000393211 HIST2H2BDQ6DRA6 164 aa7.12□□□□□ -1.27
COL17A1-203ENST00000393211 SORL1Q92673 2214 aa7.12□□□□□ -1.27
COL17A1-203ENST00000393211 TRAV13-1A0A0B4J241 112 aa7.12□□□□□ -1.27
COL17A1-203ENST00000393211 B5MCH6 92 aa7.12□□□□□ -1.27
COL17A1-203ENST00000393211 UBE2L6O14933 153 aa7.12□□□□□ -1.27
COL17A1-203ENST00000393211 INAFM2P0DMQ5 153 aa7.12□□□□□ -1.27
COL17A1-203ENST00000393211 RPL28P46779 137 aaKnown RBP7.12□□□□□ -1.27
COL17A1-203ENST00000393211 KHDC1LQ5JSQ8 128 aa7.12□□□□□ -1.27
COL17A1-203ENST00000393211 SDIM1Q6ZPB5 146 aa7.12□□□□□ -1.27
COL17A1-203ENST00000393211 LINC00643Q86TS7 51 aa7.12□□□□□ -1.27
COL17A1-203ENST00000393211 CSPG4Q6UVK1 2322 aa7.11□□□□□ -1.27
COL17A1-203ENST00000393211 TRBV6-4A0A1B0GX49 114 aa7.11□□□□□ -1.27
COL17A1-203ENST00000393211 BAALC-AS2P0C853 105 aa7.11□□□□□ -1.27
COL17A1-203ENST00000393211 MAPK1IP1LQ8NDC0 245 aa7.11□□□□□ -1.27
COL17A1-203ENST00000393211 FAM110AQ9BQ89 295 aa7.11□□□□□ -1.27
COL17A1-203ENST00000393211 DOPEY1Q5JWR5 2465 aa7.11□□□□□ -1.27
COL17A1-203ENST00000393211 PRB1P04280 392 aa7.1□□□□□ -1.27
COL17A1-203ENST00000393211 Q6ZTI0 123 aa7.1□□□□□ -1.27
COL17A1-203ENST00000393211 C16orf74Q96GX8 76 aa7.1□□□□□ -1.27
COL17A1-203ENST00000393211 CCDC179H3BU77 68 aa7.09□□□□□ -1.27
COL17A1-203ENST00000393211 ATP5G1P05496 136 aa7.09□□□□□ -1.27
COL17A1-203ENST00000393211 CXCL5P42830 114 aa7.09□□□□□ -1.27
COL17A1-203ENST00000393211 COX7B2Q8TF08 81 aa7.09□□□□□ -1.27
COL17A1-203ENST00000393211 BBC3Q96PG8 261 aaPredicted RBP7.09□□□□□ -1.27
COL17A1-203ENST00000393211 SS18L2Q9UHA2 77 aa7.09□□□□□ -1.27
COL17A1-203ENST00000393211 SVEP1Q4LDE5 3571 aa7.09□□□□□ -1.27
COL17A1-203ENST00000393211 CR1P17927 2039 aa7.09□□□□□ -1.27
COL17A1-203ENST00000393211 H0YGX0 51 aa7.09□□□□□ -1.28
COL17A1-203ENST00000393211 CRPP02741 224 aa7.09□□□□□ -1.28
COL17A1-203ENST00000393211 DEFB113Q30KQ7 82 aa7.09□□□□□ -1.28
COL17A1-203ENST00000393211 KMT2BQ9UMN6 2715 aaPredicted RBP7.08□□□□□ -1.28
COL17A1-203ENST00000393211 A0A0U1RRA0 63 aa7.08□□□□□ -1.28
COL17A1-203ENST00000393211 CCL24O00175 119 aa7.08□□□□□ -1.28
COL17A1-203ENST00000393211 NDUFA7O95182 113 aa7.08□□□□□ -1.28
COL17A1-203ENST00000393211 Q96MF0 132 aa7.08□□□□□ -1.28
COL17A1-203ENST00000393211 IBA57-AS1B1ANH7 110 aa7.07□□□□□ -1.28
COL17A1-203ENST00000393211 NOP10Q9NPE3 64 aaKnown RBP7.07□□□□□ -1.28
COL17A1-203ENST00000393211 IGSF10Q6WRI0 2623 aa7.07□□□□□ -1.28
COL17A1-203ENST00000393211 MALP21145 153 aa7.06□□□□□ -1.28
COL17A1-203ENST00000393211 TMEM126AQ9H061 195 aa7.06□□□□□ -1.28
COL17A1-203ENST00000393211 SND1-IT1Q9HBX3 110 aa7.06□□□□□ -1.28
COL17A1-203ENST00000393211 TRGV2A0A075B6R0 118 aa7.05□□□□□ -1.28
COL17A1-203ENST00000393211 PLAC8L1A1L4L8 177 aa7.05□□□□□ -1.28
COL17A1-203ENST00000393211 MIR7-3HGQ8N6C7 128 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms