RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 LOC107984640A0A0U1RRK4 108 aa8.05□□□□□ -1.12
RTN3-206ENST00000377819 CTRLP40313 264 aa8.05□□□□□ -1.12
RTN3-206ENST00000377819 SLX1AQ9BQ83 275 aa8.05□□□□□ -1.12
RTN3-206ENST00000377819 MIA3Q5JRA6 1907 aa8.04□□□□□ -1.12
RTN3-206ENST00000377819 PLAC8L1A1L4L8 177 aa8.04□□□□□ -1.12
RTN3-206ENST00000377819 HELZP42694 1942 aaKnown RBP8.04□□□□□ -1.12
RTN3-206ENST00000377819 NYNRINQ9P2P1 1898 aaKnown RBP8.04□□□□□ -1.12
RTN3-206ENST00000377819 USP9XQ93008 2570 aaPredicted RBP8.04□□□□□ -1.12
RTN3-206ENST00000377819 REV3LO60673 3130 aa8.03□□□□□ -1.12
RTN3-206ENST00000377819 MYLKQ15746 1914 aa8.03□□□□□ -1.12
RTN3-206ENST00000377819 NUPR2A6NF83 97 aa8.03□□□□□ -1.12
RTN3-206ENST00000377819 IMUPQ9GZP8 106 aa8.03□□□□□ -1.12
RTN3-206ENST00000377819 LINC00308Q8TCZ7 52 aa8.03□□□□□ -1.12
RTN3-206ENST00000377819 RNASE8Q8TDE3 154 aaKnown RBP8.02□□□□□ -1.13
RTN3-206ENST00000377819 DCANP1Q8TF63 244 aa8.02□□□□□ -1.13
RTN3-206ENST00000377819 C10orf25Q5T742 122 aa8.02□□□□□ -1.13
RTN3-206ENST00000377819 P0DMU3 169 aa8.02□□□□□ -1.13
RTN3-206ENST00000377819 FAM231AP0DMU4 169 aa8.02□□□□□ -1.13
RTN3-206ENST00000377819 FAM231CP0DMU5 169 aa8.02□□□□□ -1.13
RTN3-206ENST00000377819 ESRGQ1W209 222 aa8.02□□□□□ -1.13
RTN3-206ENST00000377819 GBF1Q92538 1859 aa8.02□□□□□ -1.13
RTN3-206ENST00000377819 TRBV6-8A0A0A6YYG3 113 aa8.02□□□□□ -1.13
RTN3-206ENST00000377819 A0A1B0GXF2 115 aa8.02□□□□□ -1.13
RTN3-206ENST00000377819 GRNP28799 593 aaKnown RBP8.02□□□□□ -1.13
RTN3-206ENST00000377819 Q8N976 141 aa8.01□□□□□ -1.13
RTN3-206ENST00000377819 CCDC140Q96MF4 163 aa8.01□□□□□ -1.13
RTN3-206ENST00000377819 DOCK4Q8N1I0 1966 aa8.01□□□□□ -1.13
RTN3-206ENST00000377819 NDUFA7O95182 113 aa8.01□□□□□ -1.13
RTN3-206ENST00000377819 MRPS36P82909 103 aaKnown RBP8.01□□□□□ -1.13
RTN3-206ENST00000377819 EBI3Q14213 229 aa8.01□□□□□ -1.13
RTN3-206ENST00000377819 CRIPAKQ8N1N5 446 aa8.01□□□□□ -1.13
RTN3-206ENST00000377819 C1orf147Q96MC9 270 aaPredicted RBP8.01□□□□□ -1.13
RTN3-206ENST00000377819 IGF1P05019 195 aa8□□□□□ -1.13
RTN3-206ENST00000377819 PATE2Q6UY27 113 aa8□□□□□ -1.13
RTN3-206ENST00000377819 CIRBP-AS1Q8TBR5 109 aa8□□□□□ -1.13
RTN3-206ENST00000377819 COL4A3Q01955 1670 aa8□□□□□ -1.13
RTN3-206ENST00000377819 DNAJC9-AS1A6NH13 148 aa8□□□□□ -1.13
RTN3-206ENST00000377819 TRBV6-4A0A1B0GX49 114 aa8□□□□□ -1.13
RTN3-206ENST00000377819 CD164L2Q6UWJ8 174 aa8□□□□□ -1.13
RTN3-206ENST00000377819 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8□□□□□ -1.13
RTN3-206ENST00000377819 TRBV6-5A0A0K0K1A5 114 aa7.99□□□□□ -1.13
RTN3-206ENST00000377819 DEFB1P60022 68 aa7.99□□□□□ -1.13
RTN3-206ENST00000377819 ANAPC1Q9H1A4 1944 aa7.99□□□□□ -1.13
RTN3-206ENST00000377819 RBX1P62877 108 aa7.99□□□□□ -1.13
RTN3-206ENST00000377819 KIAA1549LQ6ZVL6 1849 aa7.99□□□□□ -1.13
RTN3-206ENST00000377819 MT-ATP8P03928 68 aa7.99□□□□□ -1.13
RTN3-206ENST00000377819 LINC00337Q8N6G1 96 aa7.99□□□□□ -1.13
RTN3-206ENST00000377819 MUC7Q8TAX7 377 aa7.99□□□□□ -1.13
RTN3-206ENST00000377819 PYGO1Q9Y3Y4 419 aa7.99□□□□□ -1.13
RTN3-206ENST00000377819 ZNF843Q8N446 348 aa7.98□□□□□ -1.13
RTN3-206ENST00000377819 ODF3Q96PU9 254 aa7.98□□□□□ -1.13
RTN3-206ENST00000377819 CELA1Q9UNI1 258 aa7.98□□□□□ -1.13
RTN3-206ENST00000377819 COL4A2P08572 1712 aa7.98□□□□□ -1.13
RTN3-206ENST00000377819 CEP350Q5VT06 3117 aa7.98□□□□□ -1.13
RTN3-206ENST00000377819 NRGNQ92686 78 aa7.98□□□□□ -1.13
RTN3-206ENST00000377819 MUC22E2RYF6 1773 aaPredicted RBP7.98□□□□□ -1.13
RTN3-206ENST00000377819 VPREB1P12018 145 aa7.98□□□□□ -1.13
RTN3-206ENST00000377819 LINC00467Q9BRT7 94 aa7.98□□□□□ -1.13
RTN3-206ENST00000377819 COX7CP15954 63 aa7.98□□□□□ -1.13
RTN3-206ENST00000377819 KPRPQ5T749 579 aaPredicted RBP7.98□□□□□ -1.13
RTN3-206ENST00000377819 ZNF524Q96C55 264 aa7.98□□□□□ -1.13
RTN3-206ENST00000377819 LOC100131303A0A0U1RQF7 123 aa7.97□□□□□ -1.13
RTN3-206ENST00000377819 FAM30AQ9NZY2 134 aa7.97□□□□□ -1.13
RTN3-206ENST00000377819 C10orf91Q5T1B1 145 aa7.97□□□□□ -1.13
RTN3-206ENST00000377819 TRBV30A0A0K0K1B3 111 aa7.97□□□□□ -1.13
RTN3-206ENST00000377819 ZNF73O43830 326 aaPredicted RBP7.97□□□□□ -1.13
RTN3-206ENST00000377819 TDRG1Q3Y452 100 aa7.97□□□□□ -1.13
RTN3-206ENST00000377819 UNQ9165/PRO28630Q6UXU0 137 aa7.97□□□□□ -1.13
RTN3-206ENST00000377819 MYO16Q9Y6X6 1858 aa7.97□□□□□ -1.13
RTN3-206ENST00000377819 USP9YO00507 2555 aaPredicted RBP7.97□□□□□ -1.13
RTN3-206ENST00000377819 CDPF1Q6NVV7 123 aa7.97□□□□□ -1.13
RTN3-206ENST00000377819 POM121L12Q8N7R1 296 aa7.97□□□□□ -1.13
RTN3-206ENST00000377819 TNFRSF13BO14836 293 aaPredicted RBP7.96□□□□□ -1.13
RTN3-206ENST00000377819 ABCA12Q86UK0 2595 aa7.96□□□□□ -1.13
RTN3-206ENST00000377819 RPL37AP8A6NKH3 93 aa7.96□□□□□ -1.14
RTN3-206ENST00000377819 Q6ZSR3 168 aa7.96□□□□□ -1.14
RTN3-206ENST00000377819 IGHV6-1A0A0B4J1U7 121 aa7.96□□□□□ -1.14
RTN3-206ENST00000377819 ZNF22P17026 224 aaPredicted RBP7.96□□□□□ -1.14
RTN3-206ENST00000377819 DEFB114Q30KQ6 69 aa7.96□□□□□ -1.14
RTN3-206ENST00000377819 SERTAD4-AS1Q5TG53 156 aa7.96□□□□□ -1.14
RTN3-206ENST00000377819 DENND4AQ7Z401 1863 aa7.96□□□□□ -1.14
RTN3-206ENST00000377819 hDV103S1A0JD37 113 aa7.96□□□□□ -1.14
RTN3-206ENST00000377819 NANOS2P60321 138 aaKnown RBP7.96□□□□□ -1.14
RTN3-206ENST00000377819 LELP1Q5T871 98 aa7.95□□□□□ -1.14
RTN3-206ENST00000377819 ZNF503-AS2A6NEH8 195 aa7.95□□□□□ -1.14
RTN3-206ENST00000377819 Q6JHZ5 121 aa7.95□□□□□ -1.14
RTN3-206ENST00000377819 AGRNO00468 2067 aa7.95□□□□□ -1.14
RTN3-206ENST00000377819 FAM167A-AS1Q96KT0 104 aa7.95□□□□□ -1.14
RTN3-206ENST00000377819 TRANK1O15050 2925 aa7.95□□□□□ -1.14
RTN3-206ENST00000377819 K7EQG2 157 aa7.95□□□□□ -1.14
RTN3-206ENST00000377819 LINC01547P58512 204 aaPredicted RBP7.95□□□□□ -1.14
RTN3-206ENST00000377819 SOSTDC1Q6X4U4 206 aa7.95□□□□□ -1.14
RTN3-206ENST00000377819 TRIAP1O43715 76 aa7.94□□□□□ -1.14
RTN3-206ENST00000377819 IGLV1-47P01700 117 aa7.94□□□□□ -1.14
RTN3-206ENST00000377819 NRACQ8N912 160 aa7.94□□□□□ -1.14
RTN3-206ENST00000377819 NTM-AS1Q6ZSK4 140 aa7.94□□□□□ -1.14
RTN3-206ENST00000377819 TNRC6AQ8NDV7 1962 aaKnown RBP7.94□□□□□ -1.14
RTN3-206ENST00000377819 IGLV4-3A0A075B6K6 122 aa7.94□□□□□ -1.14
RTN3-206ENST00000377819 PCOTHQ58A44 107 aa7.93□□□□□ -1.14
RTN3-206ENST00000377819 ARHGAP32A7KAX9 2087 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms