RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 HERVK_113P63121 156 aa15.25■□□□□ 0.03
UPF3A-202ENST00000375299 ACYP1P07311 99 aa15.24■□□□□ 0.03
UPF3A-202ENST00000375299 UTP20O75691 2785 aaKnown RBP15.24■□□□□ 0.03
UPF3A-202ENST00000375299 RS1O15537 224 aa15.24■□□□□ 0.03
UPF3A-202ENST00000375299 CSPG4Q6UVK1 2322 aa15.23■□□□□ 0.03
UPF3A-202ENST00000375299 USP9XQ93008 2570 aaPredicted RBP15.23■□□□□ 0.03
UPF3A-202ENST00000375299 DSCR9P59020 149 aa15.23■□□□□ 0.03
UPF3A-202ENST00000375299 BEAN1Q3B7T3 259 aa15.23■□□□□ 0.03
UPF3A-202ENST00000375299 LINC01587Q99440 93 aa15.23■□□□□ 0.03
UPF3A-202ENST00000375299 LINC00242Q5T6M2 205 aa15.22■□□□□ 0.03
UPF3A-202ENST00000375299 COPS9Q8WXC6 57 aa15.22■□□□□ 0.03
UPF3A-202ENST00000375299 ZNF625Q96I27 306 aaPredicted RBP15.22■□□□□ 0.03
UPF3A-202ENST00000375299 CHCHD5Q9BSY4 110 aa15.22■□□□□ 0.03
UPF3A-202ENST00000375299 A0A0U1RRA0 63 aa15.22■□□□□ 0.03
UPF3A-202ENST00000375299 MEIG1Q5JSS6 88 aa15.22■□□□□ 0.03
UPF3A-202ENST00000375299 SHISA2Q6UWI4 295 aa15.22■□□□□ 0.03
UPF3A-202ENST00000375299 SLURP1P55000 103 aa15.21■□□□□ 0.03
UPF3A-202ENST00000375299 SOSTDC1Q6X4U4 206 aa15.21■□□□□ 0.03
UPF3A-202ENST00000375299 LINC01356Q8N9X3 169 aa15.21■□□□□ 0.03
UPF3A-202ENST00000375299 IGSF10Q6WRI0 2623 aa15.2■□□□□ 0.02
UPF3A-202ENST00000375299 CSMD2Q7Z408 3487 aa15.2■□□□□ 0.02
UPF3A-202ENST00000375299 FAM19A3Q7Z5A8 133 aa15.2■□□□□ 0.02
UPF3A-202ENST00000375299 SMIM1B2RUZ4 78 aa15.19■□□□□ 0.02
UPF3A-202ENST00000375299 Q8N2B8 174 aa15.19■□□□□ 0.02
UPF3A-202ENST00000375299 IMUPQ9GZP8 106 aa15.19■□□□□ 0.02
UPF3A-202ENST00000375299 ZNF702PQ9H963 129 aa15.19■□□□□ 0.02
UPF3A-202ENST00000375299 DEFB136Q30KP8 78 aa15.18■□□□□ 0.02
UPF3A-202ENST00000375299 MAP6D1Q9H9H5 199 aa15.18■□□□□ 0.02
UPF3A-202ENST00000375299 VPREB3Q9UKI3 123 aa15.18■□□□□ 0.02
UPF3A-202ENST00000375299 INSP01308 110 aa15.17■□□□□ 0.02
UPF3A-202ENST00000375299 TRACP01848 142 aa15.17■□□□□ 0.02
UPF3A-202ENST00000375299 A0A096LNT2 108 aa15.17■□□□□ 0.02
UPF3A-202ENST00000375299 LINC00694P0DN24 101 aa15.17■□□□□ 0.02
UPF3A-202ENST00000375299 C18orf65Q6ZTR6 163 aa15.17■□□□□ 0.02
UPF3A-202ENST00000375299 PRIMA1Q86XR5 153 aa15.16■□□□□ 0.02
UPF3A-202ENST00000375299 FAM110AQ9BQ89 295 aa15.16■□□□□ 0.02
UPF3A-202ENST00000375299 FAM236AA0A1B0GUQ0 79 aa15.16■□□□□ 0.02
UPF3A-202ENST00000375299 FAM236BA0A1B0GV22 79 aa15.16■□□□□ 0.02
UPF3A-202ENST00000375299 DAZ2Q13117 558 aaKnown RBP15.16■□□□□ 0.02
UPF3A-202ENST00000375299 DAZ4Q86SG3 579 aaKnown RBP15.16■□□□□ 0.02
UPF3A-202ENST00000375299 SMIM20Q8N5G0 67 aa15.16■□□□□ 0.02
UPF3A-202ENST00000375299 SMCR5Q8TEV8 140 aa15.16■□□□□ 0.02
UPF3A-202ENST00000375299 DAZ3Q9NR90 486 aaKnown RBP15.16■□□□□ 0.02
UPF3A-202ENST00000375299 NDUFA7O95182 113 aa15.15■□□□□ 0.02
UPF3A-202ENST00000375299 CACNA1AO00555 2505 aa15.15■□□□□ 0.02
UPF3A-202ENST00000375299 J3QLI3 93 aa15.14■□□□□ 0.01
UPF3A-202ENST00000375299 MAPK1IP1LQ8NDC0 245 aa15.14■□□□□ 0.01
UPF3A-202ENST00000375299 TRAV13-1A0A0B4J241 112 aa15.13■□□□□ 0.01
UPF3A-202ENST00000375299 LINC00643Q86TS7 51 aa15.13■□□□□ 0.01
UPF3A-202ENST00000375299 CSDC2Q9Y534 153 aaKnown RBP15.13■□□□□ 0.01
UPF3A-202ENST00000375299 ZANQ9Y493 2812 aa15.13■□□□□ 0.01
UPF3A-202ENST00000375299 PEMTQ9UBM1 199 aa15.13■□□□□ 0.01
UPF3A-202ENST00000375299 BAALC-AS2P0C853 105 aa15.12■□□□□ 0.01
UPF3A-202ENST00000375299 HERV-K104P63124 156 aa15.12■□□□□ 0.01
UPF3A-202ENST00000375299 F5H768 121 aa15.11■□□□□ 0.01
UPF3A-202ENST00000375299 PPDPFQ9H3Y8 114 aa15.11■□□□□ 0.01
UPF3A-202ENST00000375299 FBN2P35556 2912 aa15.11■□□□□ 0.01
UPF3A-202ENST00000375299 FAM218AQ96MZ4 157 aa15.11■□□□□ 0.01
UPF3A-202ENST00000375299 SDIM1Q6ZPB5 146 aa15.1■□□□□ 0.01
UPF3A-202ENST00000375299 C22orf24Q9Y442 160 aa15.1■□□□□ 0.01
UPF3A-202ENST00000375299 DYNLRB2Q8TF09 96 aa15.1■□□□□ 0.01
UPF3A-202ENST00000375299 MYO18BQ8IUG5 2567 aa15.09■□□□□ 0.01
UPF3A-202ENST00000375299 RPL36AP83881 106 aaKnown RBP15.09■□□□□ 0.01
UPF3A-202ENST00000375299 FAM222AQ5U5X8 452 aa15.09■□□□□ 0.01
UPF3A-202ENST00000375299 Q6YL49 198 aa15.09■□□□□ 0.01
UPF3A-202ENST00000375299 NTM-AS1Q6ZSK4 140 aa15.09■□□□□ 0.01
UPF3A-202ENST00000375299 RPL36ALQ969Q0 106 aaKnown RBP15.09■□□□□ 0.01
UPF3A-202ENST00000375299 TMEM126AQ9H061 195 aa15.09■□□□□ 0.01
UPF3A-202ENST00000375299 USP9YO00507 2555 aaPredicted RBP15.09■□□□□ 0.01
UPF3A-202ENST00000375299 CDC42SE2Q9NRR3 84 aa15.09■□□□□ 0.01
UPF3A-202ENST00000375299 ANKRD17O75179 2603 aaKnown RBP15.08■□□□□ 0
UPF3A-202ENST00000375299 IL17DQ8TAD2 202 aa15.08■□□□□ 0
UPF3A-202ENST00000375299 TRGV1A0A0A0MS02 117 aa15.07■□□□□ 0
UPF3A-202ENST00000375299 K7EQD1 137 aa15.07■□□□□ 0
UPF3A-202ENST00000375299 XCL2Q9UBD3 114 aa15.07■□□□□ 0
UPF3A-202ENST00000375299 TRBV10-1A0A0K0K1A3 114 aa15.07■□□□□ 0
UPF3A-202ENST00000375299 FSHBP01225 129 aa15.07■□□□□ 0
UPF3A-202ENST00000375299 MXRA5Q9NR99 2828 aa15.07■□□□□ 0
UPF3A-202ENST00000375299 HIST2H2BCQ6DN03 193 aa15.06■□□□□ 0
UPF3A-202ENST00000375299 HIST2H2BDQ6DRA6 164 aa15.06■□□□□ 0
UPF3A-202ENST00000375299 C3orf56Q8N813 242 aa15.06■□□□□ 0
UPF3A-202ENST00000375299 INAFM2P0DMQ5 153 aa15.05■□□□□ 0
UPF3A-202ENST00000375299 PF4P02776 101 aa15.05■□□□□ -0
UPF3A-202ENST00000375299 RPL28P46779 137 aaKnown RBP15.05■□□□□ -0
UPF3A-202ENST00000375299 DEFB114Q30KQ6 69 aa15.05■□□□□ -0
UPF3A-202ENST00000375299 CREBBPQ92793 2442 aa15.04■□□□□ -0
UPF3A-202ENST00000375299 TRAV13-2A0A0B4J235 113 aa15.04■□□□□ -0
UPF3A-202ENST00000375299 Q96MF0 132 aa15.04■□□□□ -0
UPF3A-202ENST00000375299 C1orf158Q8N1D5 194 aa15.04■□□□□ -0
UPF3A-202ENST00000375299 POLQO75417 2590 aa15.03■□□□□ -0
UPF3A-202ENST00000375299 C4orf3Q8WVX3 66 aa15.03■□□□□ -0
UPF3A-202ENST00000375299 CRPP02741 224 aa15.03■□□□□ -0
UPF3A-202ENST00000375299 CXCL5P42830 114 aa15.03■□□□□ -0
UPF3A-202ENST00000375299 IGHV4-31P0DP07 118 aa15.02■□□□□ -0
UPF3A-202ENST00000375299 MALP21145 153 aa15.02■□□□□ -0
UPF3A-202ENST00000375299 Q9HAA7 133 aa15.02■□□□□ -0
UPF3A-202ENST00000375299 ATP5G1P05496 136 aa15.02□□□□□ -0.01
UPF3A-202ENST00000375299 C3orf22Q8N5N4 141 aa15.02□□□□□ -0.01
UPF3A-202ENST00000375299 KHDC1LQ5JSQ8 128 aa15.01□□□□□ -0.01
UPF3A-202ENST00000375299 GAGE2AQ6NT46 116 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms