RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 NXPH4O95158 308 aa6.44□□□□□ -1.38
USP4-202ENST00000351842 UFSP1Q6NVU6 142 aa6.44□□□□□ -1.38
USP4-202ENST00000351842 C11orf68Q9H3H3 251 aaKnown RBP6.44□□□□□ -1.38
USP4-202ENST00000351842 TRBV7-3A0A075B6L6 115 aa6.44□□□□□ -1.38
USP4-202ENST00000351842 LEPROTL1O95214 131 aa6.44□□□□□ -1.38
USP4-202ENST00000351842 TP73-AS1Q9UF72 201 aa6.44□□□□□ -1.38
USP4-202ENST00000351842 RPL39P62891 51 aaKnown RBP6.43□□□□□ -1.38
USP4-202ENST00000351842 GAGE6Q13070 117 aa6.43□□□□□ -1.38
USP4-202ENST00000351842 SMIM20Q8N5G0 67 aa6.43□□□□□ -1.38
USP4-202ENST00000351842 HSPB8Q9UJY1 196 aa6.43□□□□□ -1.38
USP4-202ENST00000351842 A0A096LNJ9 63 aa6.43□□□□□ -1.38
USP4-202ENST00000351842 TRAV10A0A0B4J240 114 aa6.43□□□□□ -1.38
USP4-202ENST00000351842 TCTAP57738 103 aa6.43□□□□□ -1.38
USP4-202ENST00000351842 PLECQ15149 4684 aaKnown RBP6.43□□□□□ -1.38
USP4-202ENST00000351842 LINC00173Q6ZV60 143 aa6.43□□□□□ -1.38
USP4-202ENST00000351842 UBE2DNLQ8IWF7 75 aa6.43□□□□□ -1.38
USP4-202ENST00000351842 NRACQ8N912 160 aa6.43□□□□□ -1.38
USP4-202ENST00000351842 ATP6V0E2Q8NHE4 81 aa6.42□□□□□ -1.38
USP4-202ENST00000351842 KIR2DL4Q99706 377 aa6.42□□□□□ -1.38
USP4-202ENST00000351842 IGHV3-30P01768 117 aa6.42□□□□□ -1.38
USP4-202ENST00000351842 IGHV3-33P01772 117 aa6.42□□□□□ -1.38
USP4-202ENST00000351842 IGHV3-30-3P0DP02 117 aa6.42□□□□□ -1.38
USP4-202ENST00000351842 IGHV3-30-5P0DP03 117 aa6.42□□□□□ -1.38
USP4-202ENST00000351842 ZC2HC1BQ5TFG8 222 aa6.42□□□□□ -1.38
USP4-202ENST00000351842 OPRPNQ99935 248 aaPredicted RBP6.42□□□□□ -1.38
USP4-202ENST00000351842 TEX48A0A1B0GUV7 120 aa6.42□□□□□ -1.38
USP4-202ENST00000351842 MAP1LC3CQ9BXW4 147 aa6.42□□□□□ -1.38
USP4-202ENST00000351842 DNAH7Q8WXX0 4024 aa6.42□□□□□ -1.38
USP4-202ENST00000351842 M0R2N4 97 aa6.41□□□□□ -1.38
USP4-202ENST00000351842 PMCHL2Q9BQD1 86 aa6.41□□□□□ -1.38
USP4-202ENST00000351842 SMIM2Q9BVW6 85 aa6.41□□□□□ -1.38
USP4-202ENST00000351842 ICOSQ9Y6W8 199 aa6.41□□□□□ -1.38
USP4-202ENST00000351842 AP5S1Q9NUS5 200 aa6.41□□□□□ -1.38
USP4-202ENST00000351842 TRBV6-4A0A1B0GX49 114 aa6.4□□□□□ -1.38
USP4-202ENST00000351842 MRPL23Q16540 153 aaKnown RBP6.4□□□□□ -1.38
USP4-202ENST00000351842 ZFP2Q6ZN57 461 aa6.4□□□□□ -1.38
USP4-202ENST00000351842 UBE2L6O14933 153 aa6.4□□□□□ -1.38
USP4-202ENST00000351842 RPL32P62910 135 aaKnown RBP6.4□□□□□ -1.38
USP4-202ENST00000351842 DGAT2L7PQ6IED9 249 aa6.4□□□□□ -1.38
USP4-202ENST00000351842 K7EP34 96 aa6.4□□□□□ -1.39
USP4-202ENST00000351842 COX8AP10176 69 aa6.4□□□□□ -1.39
USP4-202ENST00000351842 LGALS9CQ6DKI2 356 aa6.4□□□□□ -1.39
USP4-202ENST00000351842 SLC25A34Q6PIV7 304 aa6.4□□□□□ -1.39
USP4-202ENST00000351842 MUC7Q8TAX7 377 aa6.4□□□□□ -1.39
USP4-202ENST00000351842 FGF6P10767 208 aa6.39□□□□□ -1.39
USP4-202ENST00000351842 WFDC10BQ8IUB3 73 aa6.39□□□□□ -1.39
USP4-202ENST00000351842 LINC00612Q8N6U2 182 aa6.39□□□□□ -1.39
USP4-202ENST00000351842 DNAJC30Q96LL9 226 aa6.39□□□□□ -1.39
USP4-202ENST00000351842 A0A087WX48 190 aa6.39□□□□□ -1.39
USP4-202ENST00000351842 I3L3M4 83 aa6.39□□□□□ -1.39
USP4-202ENST00000351842 VCYO14598 125 aa6.39□□□□□ -1.39
USP4-202ENST00000351842 LY6G6CO95867 125 aa6.39□□□□□ -1.39
USP4-202ENST00000351842 LINC00694P0DN24 101 aa6.39□□□□□ -1.39
USP4-202ENST00000351842 ESRGQ1W209 222 aa6.39□□□□□ -1.39
USP4-202ENST00000351842 C2orf91Q6ZV80 131 aa6.39□□□□□ -1.39
USP4-202ENST00000351842 NAA38Q9BRA0 125 aaKnown RBP6.39□□□□□ -1.39
USP4-202ENST00000351842 Q9HAA7 133 aa6.39□□□□□ -1.39
USP4-202ENST00000351842 KLK5Q9Y337 293 aaPredicted RBP6.39□□□□□ -1.39
USP4-202ENST00000351842 IGLV10-54A0A075B6I4 117 aa6.38□□□□□ -1.39
USP4-202ENST00000351842 B5MCH6 92 aa6.38□□□□□ -1.39
USP4-202ENST00000351842 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.38□□□□□ -1.39
USP4-202ENST00000351842 H3BUT2 72 aa6.38□□□□□ -1.39
USP4-202ENST00000351842 UBE2D3P61077 147 aa6.38□□□□□ -1.39
USP4-202ENST00000351842 UBE2D2P62837 147 aa6.38□□□□□ -1.39
USP4-202ENST00000351842 NTM-AS1Q6ZSK4 140 aa6.38□□□□□ -1.39
USP4-202ENST00000351842 hDV102S1A0JD36 115 aa6.38□□□□□ -1.39
USP4-202ENST00000351842 WWC2-AS2Q96NR7 200 aa6.37□□□□□ -1.39
USP4-202ENST00000351842 TRBV25-1A0A075B6N4 114 aa6.37□□□□□ -1.39
USP4-202ENST00000351842 A4D1N5 150 aa6.37□□□□□ -1.39
USP4-202ENST00000351842 J3QR89 54 aa6.37□□□□□ -1.39
USP4-202ENST00000351842 TSHBP01222 138 aa6.37□□□□□ -1.39
USP4-202ENST00000351842 DAZ4Q86SG3 579 aaKnown RBP6.37□□□□□ -1.39
USP4-202ENST00000351842 DAZ3Q9NR90 486 aaKnown RBP6.37□□□□□ -1.39
USP4-202ENST00000351842 LAGE3Q14657 143 aa6.37□□□□□ -1.39
USP4-202ENST00000351842 C2orf66Q6UXQ4 117 aa6.37□□□□□ -1.39
USP4-202ENST00000351842 OR5A1Q8NGJ0 315 aa6.37□□□□□ -1.39
USP4-202ENST00000351842 TRAV13-1A0A0B4J241 112 aa6.36□□□□□ -1.39
USP4-202ENST00000351842 TRBV10-1A0A0K0K1A3 114 aa6.36□□□□□ -1.39
USP4-202ENST00000351842 C9orf118A6NHY6 69 aa6.36□□□□□ -1.39
USP4-202ENST00000351842 ANGP03950 147 aaKnown RBP6.36□□□□□ -1.39
USP4-202ENST00000351842 POLR2KP53803 58 aaKnown RBP6.36□□□□□ -1.39
USP4-202ENST00000351842 CCL18P55774 89 aa6.36□□□□□ -1.39
USP4-202ENST00000351842 LYPD5Q6UWN5 251 aa6.36□□□□□ -1.39
USP4-202ENST00000351842 PRSS1P07477 247 aa6.36□□□□□ -1.39
USP4-202ENST00000351842 Q8N8P6 123 aa6.36□□□□□ -1.39
USP4-202ENST00000351842 NXT2Q9NPJ8 142 aaKnown RBP6.36□□□□□ -1.39
USP4-202ENST00000351842 KLK12Q9UKR0 248 aa6.36□□□□□ -1.39
USP4-202ENST00000351842 ERG28Q9UKR5 140 aa6.36□□□□□ -1.39
USP4-202ENST00000351842 SPCS1Q9Y6A9 102 aa6.36□□□□□ -1.39
USP4-202ENST00000351842 TRBV6-8A0A0A6YYG3 113 aa6.35□□□□□ -1.39
USP4-202ENST00000351842 HBDP02042 147 aa6.35□□□□□ -1.39
USP4-202ENST00000351842 TMEM243Q9BU79 118 aa6.35□□□□□ -1.39
USP4-202ENST00000351842 PPP1R17O96001 155 aa6.35□□□□□ -1.39
USP4-202ENST00000351842 PIK3CD-AS1Q5SR53 167 aa6.35□□□□□ -1.39
USP4-202ENST00000351842 SCGB3A1Q96QR1 104 aa6.35□□□□□ -1.39
USP4-202ENST00000351842 C20orf78Q9BR46 151 aa6.35□□□□□ -1.39
USP4-202ENST00000351842 KMT2AQ03164 3969 aa6.35□□□□□ -1.39
USP4-202ENST00000351842 SEC11AP67812 179 aa6.35□□□□□ -1.39
USP4-202ENST00000351842 UBE2WQ96B02 151 aa6.35□□□□□ -1.39
USP4-202ENST00000351842 LINC00588Q9Y4M8 146 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms