RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 KLK5Q9Y337 293 aaPredicted RBP10.08□□□□□ -0.8
COL6A3-202ENST00000347401 C2orf91Q6ZV80 131 aa10.08□□□□□ -0.8
COL6A3-202ENST00000347401 MIFP14174 115 aa10.08□□□□□ -0.8
COL6A3-202ENST00000347401 IGLV2-8P01709 118 aa10.08□□□□□ -0.8
COL6A3-202ENST00000347401 UBE2D2P62837 147 aa10.08□□□□□ -0.8
COL6A3-202ENST00000347401 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.07□□□□□ -0.8
COL6A3-202ENST00000347401 IGLV4-3A0A075B6K6 122 aa10.07□□□□□ -0.8
COL6A3-202ENST00000347401 CCKP06307 115 aa10.07□□□□□ -0.8
COL6A3-202ENST00000347401 MYCNOSP40205 109 aa10.07□□□□□ -0.8
COL6A3-202ENST00000347401 C9orf85Q96MD7 179 aa10.06□□□□□ -0.8
COL6A3-202ENST00000347401 LY6G6EA0A0G2JKS1 128 aa10.06□□□□□ -0.8
COL6A3-202ENST00000347401 U3KQA8 63 aa10.06□□□□□ -0.8
COL6A3-202ENST00000347401 ZNF22P17026 224 aaPredicted RBP10.06□□□□□ -0.8
COL6A3-202ENST00000347401 ARTNQ5T4W7 220 aa10.06□□□□□ -0.8
COL6A3-202ENST00000347401 IGHV4-59P01825 116 aa10.05□□□□□ -0.8
COL6A3-202ENST00000347401 IGKV1D-37A0A075B6S9 117 aa10.05□□□□□ -0.8
COL6A3-202ENST00000347401 SP5Q6BEB4 398 aaPredicted RBP10.05□□□□□ -0.8
COL6A3-202ENST00000347401 USP9YO00507 2555 aaPredicted RBP10.05□□□□□ -0.8
COL6A3-202ENST00000347401 REG3AQ06141 175 aa10.05□□□□□ -0.8
COL6A3-202ENST00000347401 FBXL19-AS1Q494R0 122 aa10.05□□□□□ -0.8
COL6A3-202ENST00000347401 SLURP1P55000 103 aa10.04□□□□□ -0.8
COL6A3-202ENST00000347401 DEFB112Q30KQ8 113 aa10.04□□□□□ -0.8
COL6A3-202ENST00000347401 M0QY20 66 aa10.04□□□□□ -0.8
COL6A3-202ENST00000347401 COL27A1Q8IZC6 1860 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-202ENST00000347401 TRBV6-4A0A1B0GX49 114 aa10.04□□□□□ -0.8
COL6A3-202ENST00000347401 KLK12Q9UKR0 248 aa10.04□□□□□ -0.8
COL6A3-202ENST00000347401 TTTY13Q9BZ97 58 aa10.03□□□□□ -0.8
COL6A3-202ENST00000347401 PLA2G2CQ5R387 149 aa10.03□□□□□ -0.8
COL6A3-202ENST00000347401 APRG1Q8IVJ8 170 aa10.03□□□□□ -0.8
COL6A3-202ENST00000347401 IGF1P05019 195 aa10.03□□□□□ -0.8
COL6A3-202ENST00000347401 SNURFQ9Y675 71 aa10.02□□□□□ -0.8
COL6A3-202ENST00000347401 MRPS12O15235 138 aaKnown RBP10.02□□□□□ -0.8
COL6A3-202ENST00000347401 PRAC2D3DTV9 90 aa10.02□□□□□ -0.81
COL6A3-202ENST00000347401 LINC00467Q9BRT7 94 aa10.02□□□□□ -0.81
COL6A3-202ENST00000347401 GDF5OSQ5U4N7 250 aa10.02□□□□□ -0.81
COL6A3-202ENST00000347401 CDKN2A-AS1Q9UH64 79 aa10.02□□□□□ -0.81
COL6A3-202ENST00000347401 POLQO75417 2590 aa10.01□□□□□ -0.81
COL6A3-202ENST00000347401 MUC22E2RYF6 1773 aaPredicted RBP10.01□□□□□ -0.81
COL6A3-202ENST00000347401 DAZAP2Q15038 168 aaPredicted RBP10□□□□□ -0.81
COL6A3-202ENST00000347401 COL4A4P53420 1690 aaPredicted RBP10□□□□□ -0.81
COL6A3-202ENST00000347401 CD164L2Q6UWJ8 174 aa10□□□□□ -0.81
COL6A3-202ENST00000347401 TRBV6-8A0A0A6YYG3 113 aa10□□□□□ -0.81
COL6A3-202ENST00000347401 CCDC179H3BU77 68 aa10□□□□□ -0.81
COL6A3-202ENST00000347401 SERTAD4-AS1Q5TG53 156 aa10□□□□□ -0.81
COL6A3-202ENST00000347401 LINC00474Q9P2X8 69 aa10□□□□□ -0.81
COL6A3-202ENST00000347401 UBE2D4Q9Y2X8 147 aa10□□□□□ -0.81
COL6A3-202ENST00000347401 LOC107984640A0A0U1RRK4 108 aa10□□□□□ -0.81
COL6A3-202ENST00000347401 F8WDY8 70 aa10□□□□□ -0.81
COL6A3-202ENST00000347401 PIP4P1Q86T03 277 aa9.99□□□□□ -0.81
COL6A3-202ENST00000347401 WFDC10AQ9H1F0 79 aa9.99□□□□□ -0.81
COL6A3-202ENST00000347401 LINC00694P0DN24 101 aa9.99□□□□□ -0.81
COL6A3-202ENST00000347401 XGP55808 180 aa9.99□□□□□ -0.81
COL6A3-202ENST00000347401 CHCHD10Q8WYQ3 142 aaPredicted RBP9.99□□□□□ -0.81
COL6A3-202ENST00000347401 M0R378 163 aa9.99□□□□□ -0.81
COL6A3-202ENST00000347401 RITA1Q96K30 269 aa9.99□□□□□ -0.81
COL6A3-202ENST00000347401 UBE2D3P61077 147 aa9.98□□□□□ -0.81
COL6A3-202ENST00000347401 CLUHP3Q96NS8 147 aa9.98□□□□□ -0.81
COL6A3-202ENST00000347401 F8W735 103 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-202ENST00000347401 PRYO14603 147 aa9.98□□□□□ -0.81
COL6A3-202ENST00000347401 RPS28P62857 69 aaKnown RBP9.98□□□□□ -0.81
COL6A3-202ENST00000347401 LINC00269Q8N2A0 174 aa9.98□□□□□ -0.81
COL6A3-202ENST00000347401 MAP6D1Q9H9H5 199 aa9.98□□□□□ -0.81
COL6A3-202ENST00000347401 LINC01548A6NM66 108 aa9.98□□□□□ -0.81
COL6A3-202ENST00000347401 PRORYQ9H606 182 aa9.98□□□□□ -0.81
COL6A3-202ENST00000347401 DEFB136Q30KP8 78 aa9.98□□□□□ -0.81
COL6A3-202ENST00000347401 DEFB113Q30KQ7 82 aa9.98□□□□□ -0.81
COL6A3-202ENST00000347401 ZFAND3Q9H8U3 227 aa9.98□□□□□ -0.81
COL6A3-202ENST00000347401 ODF3BA8MYP8 253 aa9.97□□□□□ -0.81
COL6A3-202ENST00000347401 PRO0628Q9UI54 55 aa9.97□□□□□ -0.81
COL6A3-202ENST00000347401 LIMD2Q9BT23 127 aa9.96□□□□□ -0.81
COL6A3-202ENST00000347401 K7EQG2 157 aa9.96□□□□□ -0.81
COL6A3-202ENST00000347401 PRR4Q16378 134 aa9.96□□□□□ -0.81
COL6A3-202ENST00000347401 Q8IZM0 81 aa9.96□□□□□ -0.82
COL6A3-202ENST00000347401 JMJD1CQ15652 2540 aa9.96□□□□□ -0.82
COL6A3-202ENST00000347401 RPL28P46779 137 aaKnown RBP9.96□□□□□ -0.82
COL6A3-202ENST00000347401 BCE1O60756 84 aa9.96□□□□□ -0.82
COL6A3-202ENST00000347401 C1orf158Q8N1D5 194 aa9.96□□□□□ -0.82
COL6A3-202ENST00000347401 COL4A3Q01955 1670 aa9.96□□□□□ -0.82
COL6A3-202ENST00000347401 PCSK5Q92824 1860 aa9.95□□□□□ -0.82
COL6A3-202ENST00000347401 LINC00322Q6ZN03 302 aaPredicted RBP9.95□□□□□ -0.82
COL6A3-202ENST00000347401 SMAD5-AS1Q9Y6J3 95 aa9.95□□□□□ -0.82
COL6A3-202ENST00000347401 TRBV10-3A0A0K0K1G6 114 aa9.95□□□□□ -0.82
COL6A3-202ENST00000347401 A0A1B0GW54 56 aa9.95□□□□□ -0.82
COL6A3-202ENST00000347401 SPTBN4Q9H254 2564 aa9.95□□□□□ -0.82
COL6A3-202ENST00000347401 IGF2RP11717 2491 aa9.94□□□□□ -0.82
COL6A3-202ENST00000347401 SPRY2O43597 315 aa9.94□□□□□ -0.82
COL6A3-202ENST00000347401 E7EUB6 86 aa9.94□□□□□ -0.82
COL6A3-202ENST00000347401 TNFRSF13BO14836 293 aaPredicted RBP9.94□□□□□ -0.82
COL6A3-202ENST00000347401 ZNF80P51504 273 aaPredicted RBP9.94□□□□□ -0.82
COL6A3-202ENST00000347401 C6orf99Q4VX62 202 aa9.94□□□□□ -0.82
COL6A3-202ENST00000347401 TP53TG3Q9ULZ0 132 aa9.94□□□□□ -0.82
COL6A3-202ENST00000347401 MTORP42345 2549 aa9.94□□□□□ -0.82
COL6A3-202ENST00000347401 HIGD2AQ9BW72 106 aa9.94□□□□□ -0.82
COL6A3-202ENST00000347401 CXCL6P80162 114 aa9.94□□□□□ -0.82
COL6A3-202ENST00000347401 FAM19A5Q7Z5A7 132 aaPredicted RBP9.94□□□□□ -0.82
COL6A3-202ENST00000347401 EBI3Q14213 229 aa9.94□□□□□ -0.82
COL6A3-202ENST00000347401 C3orf84H3BNL1 204 aa9.94□□□□□ -0.82
COL6A3-202ENST00000347401 NRGNQ92686 78 aa9.93□□□□□ -0.82
COL6A3-202ENST00000347401 UBE2D1P51668 147 aa9.93□□□□□ -0.82
COL6A3-202ENST00000347401 MAPKAPK5-AS1Q8N8E1 139 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms