RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 LINC01356Q8N9X3 169 aa16.25■□□□□ 0.19
TRIM28-202ENST00000341753 MYO9AB2RTY4 2548 aa16.25■□□□□ 0.19
TRIM28-202ENST00000341753 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP16.25■□□□□ 0.19
TRIM28-202ENST00000341753 UBR5O95071 2799 aaPredicted RBP16.24■□□□□ 0.19
TRIM28-202ENST00000341753 SONP18583 2426 aaKnown RBP16.24■□□□□ 0.19
TRIM28-202ENST00000341753 A0A096LNT2 108 aa16.24■□□□□ 0.19
TRIM28-202ENST00000341753 Q6Q795 121 aa16.24■□□□□ 0.19
TRIM28-202ENST00000341753 DEFB131AP59861 70 aa16.23■□□□□ 0.19
TRIM28-202ENST00000341753 C3orf56Q8N813 242 aa16.23■□□□□ 0.19
TRIM28-202ENST00000341753 CHCHD5Q9BSY4 110 aa16.22■□□□□ 0.19
TRIM28-202ENST00000341753 CITED2Q99967 270 aaPredicted RBP16.22■□□□□ 0.19
TRIM28-202ENST00000341753 COX6A2Q02221 97 aa16.21■□□□□ 0.19
TRIM28-202ENST00000341753 RBMY1BA6NDE4 496 aaKnown RBP16.21■□□□□ 0.19
TRIM28-202ENST00000341753 RBMY1EA6NEQ0 496 aaKnown RBP16.21■□□□□ 0.19
TRIM28-202ENST00000341753 RBMY1DP0C7P1 496 aaKnown RBP16.21■□□□□ 0.19
TRIM28-202ENST00000341753 HOXD3P31249 432 aaPredicted RBP16.21■□□□□ 0.19
TRIM28-202ENST00000341753 TMEM101Q96IK0 257 aa16.21■□□□□ 0.19
TRIM28-202ENST00000341753 YAE1D1Q9NRH1 226 aa16.2■□□□□ 0.18
TRIM28-202ENST00000341753 SPANXA1Q9NS26 97 aa16.2■□□□□ 0.18
TRIM28-202ENST00000341753 DEFB136Q30KP8 78 aa16.19■□□□□ 0.18
TRIM28-202ENST00000341753 NDUFA7O95182 113 aa16.18■□□□□ 0.18
TRIM28-202ENST00000341753 Q9H8V8 135 aa16.18■□□□□ 0.18
TRIM28-202ENST00000341753 DSCR9P59020 149 aa16.17■□□□□ 0.18
TRIM28-202ENST00000341753 C18orf65Q6ZTR6 163 aa16.17■□□□□ 0.18
TRIM28-202ENST00000341753 SMIM20Q8N5G0 67 aa16.17■□□□□ 0.18
TRIM28-202ENST00000341753 APCP25054 2843 aa16.16■□□□□ 0.18
TRIM28-202ENST00000341753 DGAT2L7PQ6IED9 249 aa16.16■□□□□ 0.18
TRIM28-202ENST00000341753 Q8N2B8 174 aa16.16■□□□□ 0.18
TRIM28-202ENST00000341753 CCDC168Q8NDH2 2452 aa16.16■□□□□ 0.18
TRIM28-202ENST00000341753 MEIG1Q5JSS6 88 aa16.16■□□□□ 0.18
TRIM28-202ENST00000341753 LINC00308Q8TCZ7 52 aa16.16■□□□□ 0.18
TRIM28-202ENST00000341753 EDA2RQ9HAV5 297 aa16.16■□□□□ 0.18
TRIM28-202ENST00000341753 SLURP1P55000 103 aa16.15■□□□□ 0.18
TRIM28-202ENST00000341753 NDUFA1O15239 70 aa16.15■□□□□ 0.18
TRIM28-202ENST00000341753 NF1P21359 2839 aa16.14■□□□□ 0.17
TRIM28-202ENST00000341753 CR1P17927 2039 aa16.14■□□□□ 0.17
TRIM28-202ENST00000341753 ZNF843Q8N446 348 aa16.13■□□□□ 0.17
TRIM28-202ENST00000341753 LINC01587Q99440 93 aa16.13■□□□□ 0.17
TRIM28-202ENST00000341753 IGHV4-31P0DP07 118 aa16.13■□□□□ 0.17
TRIM28-202ENST00000341753 DEFB121Q5J5C9 76 aa16.13■□□□□ 0.17
TRIM28-202ENST00000341753 SOSTDC1Q6X4U4 206 aa16.13■□□□□ 0.17
TRIM28-202ENST00000341753 IGHV3OR16-12A0A075B7B8 117 aa16.12■□□□□ 0.17
TRIM28-202ENST00000341753 ZNF415Q09FC8 603 aa16.12■□□□□ 0.17
TRIM28-202ENST00000341753 C2CD3Q4AC94 2353 aa16.12■□□□□ 0.17
TRIM28-202ENST00000341753 TIMM17BO60830 172 aa16.12■□□□□ 0.17
TRIM28-202ENST00000341753 CIRBPQ14011 172 aaKnown RBP16.12■□□□□ 0.17
TRIM28-202ENST00000341753 VPREB3Q9UKI3 123 aa16.12■□□□□ 0.17
TRIM28-202ENST00000341753 FAM240AA0A1B0GVK7 77 aa16.11■□□□□ 0.17
TRIM28-202ENST00000341753 SETD2Q9BYW2 2564 aaPredicted RBP16.11■□□□□ 0.17
TRIM28-202ENST00000341753 LINC00694P0DN24 101 aa16.11■□□□□ 0.17
TRIM28-202ENST00000341753 ZNF702PQ9H963 129 aa16.11■□□□□ 0.17
TRIM28-202ENST00000341753 TRAV13-1A0A0B4J241 112 aa16.1■□□□□ 0.17
TRIM28-202ENST00000341753 AKAP9Q99996 3911 aa16.1■□□□□ 0.17
TRIM28-202ENST00000341753 RNF152Q8N8N0 203 aa16.1■□□□□ 0.17
TRIM28-202ENST00000341753 IGHV3-53P01767 116 aa16.09■□□□□ 0.17
TRIM28-202ENST00000341753 MRPL23Q16540 153 aaKnown RBP16.09■□□□□ 0.17
TRIM28-202ENST00000341753 LINC00242Q5T6M2 205 aa16.09■□□□□ 0.17
TRIM28-202ENST00000341753 SMCR5Q8TEV8 140 aa16.09■□□□□ 0.17
TRIM28-202ENST00000341753 NOTCH3Q9UM47 2321 aa16.09■□□□□ 0.17
TRIM28-202ENST00000341753 FAM236AA0A1B0GUQ0 79 aa16.09■□□□□ 0.17
TRIM28-202ENST00000341753 FAM236BA0A1B0GV22 79 aa16.09■□□□□ 0.17
TRIM28-202ENST00000341753 COX7A2LO14548 114 aa16.08■□□□□ 0.16
TRIM28-202ENST00000341753 TIRAPP58753 221 aa16.08■□□□□ 0.16
TRIM28-202ENST00000341753 C11orf72Q8NBR9 251 aa16.08■□□□□ 0.16
TRIM28-202ENST00000341753 TMEM89A2RUT3 159 aa16.07■□□□□ 0.16
TRIM28-202ENST00000341753 Q6YL49 198 aa16.07■□□□□ 0.16
TRIM28-202ENST00000341753 ITPR3Q14573 2671 aa16.07■□□□□ 0.16
TRIM28-202ENST00000341753 IGLV5-45A0A087WSX0 123 aa16.07■□□□□ 0.16
TRIM28-202ENST00000341753 CHD6Q8TD26 2715 aa16.06■□□□□ 0.16
TRIM28-202ENST00000341753 HERV-K104P63124 156 aa16.06■□□□□ 0.16
TRIM28-202ENST00000341753 Q96MF0 132 aa16.06■□□□□ 0.16
TRIM28-202ENST00000341753 TRBV7-7A0A0K0K1E9 115 aa16.06■□□□□ 0.16
TRIM28-202ENST00000341753 J3QLI3 93 aa16.06■□□□□ 0.16
TRIM28-202ENST00000341753 PRIMA1Q86XR5 153 aa16.06■□□□□ 0.16
TRIM28-202ENST00000341753 DAZ2Q13117 558 aaKnown RBP16.05■□□□□ 0.16
TRIM28-202ENST00000341753 PIK3CD-AS1Q5SR53 167 aa16.05■□□□□ 0.16
TRIM28-202ENST00000341753 HIST2H2BCQ6DN03 193 aa16.05■□□□□ 0.16
TRIM28-202ENST00000341753 DAZ4Q86SG3 579 aaKnown RBP16.05■□□□□ 0.16
TRIM28-202ENST00000341753 DAZ3Q9NR90 486 aaKnown RBP16.05■□□□□ 0.16
TRIM28-202ENST00000341753 WNK1Q9H4A3 2382 aa16.05■□□□□ 0.16
TRIM28-202ENST00000341753 SMIM1B2RUZ4 78 aa16.04■□□□□ 0.16
TRIM28-202ENST00000341753 FAM218AQ96MZ4 157 aa16.04■□□□□ 0.16
TRIM28-202ENST00000341753 IGLV5-39A0A0G2JS06 123 aa16.04■□□□□ 0.16
TRIM28-202ENST00000341753 KHDC1LQ5JSQ8 128 aa16.03■□□□□ 0.16
TRIM28-202ENST00000341753 XCL2Q9UBD3 114 aa16.03■□□□□ 0.16
TRIM28-202ENST00000341753 FSHBP01225 129 aa16.03■□□□□ 0.16
TRIM28-202ENST00000341753 HERVK_113P63121 156 aa16.03■□□□□ 0.16
TRIM28-202ENST00000341753 UBE2E2Q96LR5 201 aa16.03■□□□□ 0.16
TRIM28-202ENST00000341753 BAALC-AS2P0C853 105 aa16.02■□□□□ 0.16
TRIM28-202ENST00000341753 DNAJC30Q96LL9 226 aa16.02■□□□□ 0.16
TRIM28-202ENST00000341753 DEFB113Q30KQ7 82 aa16.02■□□□□ 0.15
TRIM28-202ENST00000341753 SHISA2Q6UWI4 295 aa16.02■□□□□ 0.15
TRIM28-202ENST00000341753 MAP6D1Q9H9H5 199 aa16.02■□□□□ 0.15
TRIM28-202ENST00000341753 NIPBLQ6KC79 2804 aaeCLIP16.02■□□□□ 0.152e-6■■□□□ 12.7
TRIM28-202ENST00000341753 TENM4Q6N022 2769 aa16.01■□□□□ 0.15
TRIM28-202ENST00000341753 Q9HAA7 133 aa16.01■□□□□ 0.15
TRIM28-202ENST00000341753 FLNAP21333 2647 aaKnown RBP16.01■□□□□ 0.15
TRIM28-202ENST00000341753 ACANP16112 2415 aa16.01■□□□□ 0.15
TRIM28-202ENST00000341753 RS1O15537 224 aa16■□□□□ 0.15
TRIM28-202ENST00000341753 TRGV1A0A0A0MS02 117 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms