RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 ODF3BA8MYP8 253 aa2.87□□□□□ -1.95
NEDD4-201ENST00000338963 Q6ZQY7 126 aa2.87□□□□□ -1.95
NEDD4-201ENST00000338963 FAM30AQ9NZY2 134 aa2.87□□□□□ -1.95
NEDD4-201ENST00000338963 IGHV4-30-2A0A087WSY4 118 aa2.87□□□□□ -1.95
NEDD4-201ENST00000338963 LRCOL1A6NCL2 159 aa2.87□□□□□ -1.95
NEDD4-201ENST00000338963 PRB4P10163 310 aaPredicted RBP2.87□□□□□ -1.95
NEDD4-201ENST00000338963 KCNQ1DNQ9H478 68 aa2.87□□□□□ -1.95
NEDD4-201ENST00000338963 NANOS2P60321 138 aaKnown RBP2.87□□□□□ -1.95
NEDD4-201ENST00000338963 Q6ZTI0 123 aa2.87□□□□□ -1.95
NEDD4-201ENST00000338963 C22orf34Q6ZV56 151 aa2.87□□□□□ -1.95
NEDD4-201ENST00000338963 LINC01356Q8N9X3 169 aa2.87□□□□□ -1.95
NEDD4-201ENST00000338963 ZFP36P26651 326 aaKnown RBP2.86□□□□□ -1.95
NEDD4-201ENST00000338963 C10orf25Q5T742 122 aa2.86□□□□□ -1.95
NEDD4-201ENST00000338963 SMIM29Q86T20 159 aa2.86□□□□□ -1.95
NEDD4-201ENST00000338963 ZNF843Q8N446 348 aa2.86□□□□□ -1.95
NEDD4-201ENST00000338963 FANCMQ8IYD8 2048 aa2.86□□□□□ -1.95
NEDD4-201ENST00000338963 MOBPQ13875 183 aa2.86□□□□□ -1.95
NEDD4-201ENST00000338963 FAM104AQ969W3 186 aa2.86□□□□□ -1.95
NEDD4-201ENST00000338963 INSP01308 110 aa2.86□□□□□ -1.95
NEDD4-201ENST00000338963 IGHV3-11P01762 117 aa2.86□□□□□ -1.95
NEDD4-201ENST00000338963 IGHV3OR16-8A0A075B7F1 116 aa2.85□□□□□ -1.95
NEDD4-201ENST00000338963 SCN3AQ9NY46 2000 aa2.85□□□□□ -1.95
NEDD4-201ENST00000338963 IGHV4-59P01825 116 aa2.85□□□□□ -1.95
NEDD4-201ENST00000338963 IGFL3Q6UXB1 125 aa2.85□□□□□ -1.95
NEDD4-201ENST00000338963 NINQ8N4C6 2090 aa2.85□□□□□ -1.95
NEDD4-201ENST00000338963 TRGV4A0A0C4DH28 118 aa2.85□□□□□ -1.95
NEDD4-201ENST00000338963 COX6A2Q02221 97 aa2.85□□□□□ -1.95
NEDD4-201ENST00000338963 DEFB112Q30KQ8 113 aa2.85□□□□□ -1.95
NEDD4-201ENST00000338963 IGHV6-1A0A0B4J1U7 121 aa2.85□□□□□ -1.95
NEDD4-201ENST00000338963 ATP6V0E1O15342 81 aa2.85□□□□□ -1.95
NEDD4-201ENST00000338963 PLA2G2AP14555 144 aa2.85□□□□□ -1.95
NEDD4-201ENST00000338963 H0Y9P7 68 aa2.84□□□□□ -1.95
NEDD4-201ENST00000338963 DEFB104AQ8WTQ1 72 aa2.84□□□□□ -1.95
NEDD4-201ENST00000338963 MUC22E2RYF6 1773 aaPredicted RBP2.84□□□□□ -1.95
NEDD4-201ENST00000338963 LYPD2Q6UXB3 125 aa2.84□□□□□ -1.95
NEDD4-201ENST00000338963 KIF26BQ2KJY2 2108 aa2.84□□□□□ -1.95
NEDD4-201ENST00000338963 ARID1AO14497 2285 aa2.84□□□□□ -1.95
NEDD4-201ENST00000338963 IGLV4-60A0A075B6I1 120 aa2.84□□□□□ -1.96
NEDD4-201ENST00000338963 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.84□□□□□ -1.96
NEDD4-201ENST00000338963 CMC4P56277 68 aaPredicted RBP2.84□□□□□ -1.96
NEDD4-201ENST00000338963 ZNF706Q9Y5V0 76 aaPredicted RBP2.84□□□□□ -1.96
NEDD4-201ENST00000338963 SCN5AQ14524 2016 aa2.84□□□□□ -1.96
NEDD4-201ENST00000338963 COA5Q86WW8 74 aa2.83□□□□□ -1.96
NEDD4-201ENST00000338963 SCN10AQ9Y5Y9 1956 aa2.83□□□□□ -1.96
NEDD4-201ENST00000338963 TFF2Q03403 129 aa2.83□□□□□ -1.96
NEDD4-201ENST00000338963 IGHV4-61A0A0C4DH41 118 aa2.83□□□□□ -1.96
NEDD4-201ENST00000338963 DEFB119Q8N690 84 aa2.82□□□□□ -1.96
NEDD4-201ENST00000338963 DHRS4-AS1Q9P1J3 65 aa2.82□□□□□ -1.96
NEDD4-201ENST00000338963 PRR3P79522 188 aaKnown RBP2.82□□□□□ -1.96
NEDD4-201ENST00000338963 HEATR5AQ86XA9 2040 aa2.82□□□□□ -1.96
NEDD4-201ENST00000338963 Q8N9W7 124 aa2.82□□□□□ -1.96
NEDD4-201ENST00000338963 SPAG11AQ6PDA7 123 aa2.82□□□□□ -1.96
NEDD4-201ENST00000338963 ANAPC1Q9H1A4 1944 aa2.82□□□□□ -1.96
NEDD4-201ENST00000338963 LMO4P61968 165 aa2.81□□□□□ -1.96
NEDD4-201ENST00000338963 PRR4Q16378 134 aa2.81□□□□□ -1.96
NEDD4-201ENST00000338963 LINC01006Q8NI28 216 aa2.81□□□□□ -1.96
NEDD4-201ENST00000338963 FAM215AQ9Y5M1 114 aa2.81□□□□□ -1.96
NEDD4-201ENST00000338963 THADAQ6YHU6 1953 aa2.81□□□□□ -1.96
NEDD4-201ENST00000338963 TDRD6O60522 2096 aaKnown RBP2.81□□□□□ -1.96
NEDD4-201ENST00000338963 PCNX3Q9H6A9 2034 aa2.81□□□□□ -1.96
NEDD4-201ENST00000338963 FSHBP01225 129 aa2.81□□□□□ -1.96
NEDD4-201ENST00000338963 IGHV4-28A0A0C4DH34 117 aa2.81□□□□□ -1.96
NEDD4-201ENST00000338963 IGLV7-46A0A075B6I9 117 aa2.81□□□□□ -1.96
NEDD4-201ENST00000338963 IGHV4-30-4P0DP06 118 aa2.81□□□□□ -1.96
NEDD4-201ENST00000338963 SPINK13Q1W4C9 94 aa2.81□□□□□ -1.96
NEDD4-201ENST00000338963 SHANK1Q9Y566 2161 aa2.81□□□□□ -1.96
NEDD4-201ENST00000338963 IGLV6-57P01721 117 aa2.81□□□□□ -1.96
NEDD4-201ENST00000338963 TP53AIP1Q9HCN2 124 aa2.81□□□□□ -1.96
NEDD4-201ENST00000338963 MSMBP08118 114 aa2.8□□□□□ -1.96
NEDD4-201ENST00000338963 CNBPP62633 177 aaKnown RBP2.8□□□□□ -1.96
NEDD4-201ENST00000338963 ATP1A1-AS1Q5TC04 95 aa2.8□□□□□ -1.96
NEDD4-201ENST00000338963 C18orf65Q6ZTR6 163 aa2.8□□□□□ -1.96
NEDD4-201ENST00000338963 DOCK9Q9BZ29 2069 aa2.8□□□□□ -1.96
NEDD4-201ENST00000338963 KPRPQ5T749 579 aaPredicted RBP2.8□□□□□ -1.96
NEDD4-201ENST00000338963 TNRC6BQ9UPQ9 1833 aaKnown RBP2.8□□□□□ -1.96
NEDD4-201ENST00000338963 ZNF702PQ9H963 129 aa2.8□□□□□ -1.96
NEDD4-201ENST00000338963 TRIP12Q14669 1992 aaPredicted RBP2.79□□□□□ -1.96
NEDD4-201ENST00000338963 TCF20Q9UGU0 1960 aaKnown RBP2.79□□□□□ -1.96
NEDD4-201ENST00000338963 TRGV1A0A0A0MS02 117 aa2.79□□□□□ -1.96
NEDD4-201ENST00000338963 LINC00959A0A1B0GUT2 108 aa2.79□□□□□ -1.96
NEDD4-201ENST00000338963 A8MTW9 85 aa2.79□□□□□ -1.96
NEDD4-201ENST00000338963 GYPEP15421 78 aa2.79□□□□□ -1.96
NEDD4-201ENST00000338963 DEFB131BA0A096LNP1 70 aa2.79□□□□□ -1.96
NEDD4-201ENST00000338963 PRB3Q04118 309 aaPredicted RBP2.79□□□□□ -1.96
NEDD4-201ENST00000338963 Q8N9L7 120 aa2.79□□□□□ -1.96
NEDD4-201ENST00000338963 A0A096LNT2 108 aa2.79□□□□□ -1.96
NEDD4-201ENST00000338963 Q8NBF4 154 aa2.79□□□□□ -1.96
NEDD4-201ENST00000338963 A0A0A0MQY5 61 aa2.79□□□□□ -1.96
NEDD4-201ENST00000338963 LY6G6EA0A0G2JKS1 128 aa2.79□□□□□ -1.96
NEDD4-201ENST00000338963 C11orf71Q6IPW1 123 aa2.79□□□□□ -1.96
NEDD4-201ENST00000338963 U3KQA8 63 aa2.79□□□□□ -1.96
NEDD4-201ENST00000338963 PTPRSQ13332 1948 aa2.79□□□□□ -1.96
NEDD4-201ENST00000338963 PLAC8Q9NZF1 115 aa2.79□□□□□ -1.96
NEDD4-201ENST00000338963 ATG2BQ96BY7 2078 aa2.79□□□□□ -1.96
NEDD4-201ENST00000338963 ARHGAP21Q5T5U3 1957 aa2.78□□□□□ -1.96
NEDD4-201ENST00000338963 IGKV3OR2-268A0A0C4DH90 116 aa2.78□□□□□ -1.96
NEDD4-201ENST00000338963 IGKV3-7A0A075B6H7 116 aa2.78□□□□□ -1.96
NEDD4-201ENST00000338963 IGLV5-48A0A075B6I7 105 aa2.78□□□□□ -1.96
NEDD4-201ENST00000338963 GVQW2A0A096LPI5 108 aaPredicted RBP2.78□□□□□ -1.96
NEDD4-201ENST00000338963 A0A1B0GUV1 79 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms