RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 NOTCH1P46531 2555 aa10.87□□□□□ -0.67
LIMS1-202ENST00000338045 PRSS29PA6NIE9 313 aa10.87□□□□□ -0.67
LIMS1-202ENST00000338045 DPM2O94777 84 aa10.87□□□□□ -0.67
LIMS1-202ENST00000338045 IGKCP01834 107 aa10.87□□□□□ -0.67
LIMS1-202ENST00000338045 GTSF1LQ9H1H1 148 aa10.87□□□□□ -0.67
LIMS1-202ENST00000338045 K7EIL1 84 aa10.86□□□□□ -0.67
LIMS1-202ENST00000338045 IGLC3P0DOY3 106 aa10.86□□□□□ -0.67
LIMS1-202ENST00000338045 PMVKQ15126 192 aa10.86□□□□□ -0.67
LIMS1-202ENST00000338045 SS18L2Q9UHA2 77 aa10.86□□□□□ -0.67
LIMS1-202ENST00000338045 ATP5G1P05496 136 aa10.85□□□□□ -0.67
LIMS1-202ENST00000338045 SMAGPQ0VAQ4 97 aa10.85□□□□□ -0.67
LIMS1-202ENST00000338045 FAM104AQ969W3 186 aa10.85□□□□□ -0.67
LIMS1-202ENST00000338045 C11orf68Q9H3H3 251 aaKnown RBP10.85□□□□□ -0.67
LIMS1-202ENST00000338045 SPANXA1Q9NS26 97 aa10.85□□□□□ -0.67
LIMS1-202ENST00000338045 UBE2D4Q9Y2X8 147 aa10.85□□□□□ -0.67
LIMS1-202ENST00000338045 NBEAL1Q6ZS30 2694 aa10.85□□□□□ -0.67
LIMS1-202ENST00000338045 IGLV4-3A0A075B6K6 122 aa10.85□□□□□ -0.67
LIMS1-202ENST00000338045 PRB2P02812 416 aaPredicted RBP10.85□□□□□ -0.67
LIMS1-202ENST00000338045 PLNP26678 52 aa10.85□□□□□ -0.67
LIMS1-202ENST00000338045 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.84□□□□□ -0.67
LIMS1-202ENST00000338045 IGKV2-29A2NJV5 120 aaPredicted RBP10.84□□□□□ -0.67
LIMS1-202ENST00000338045 SBSPONQ8IVN8 264 aa10.84□□□□□ -0.67
LIMS1-202ENST00000338045 OPRPNQ99935 248 aaPredicted RBP10.84□□□□□ -0.67
LIMS1-202ENST00000338045 MGAM2Q2M2H8 2515 aa10.83□□□□□ -0.68
LIMS1-202ENST00000338045 GAGE6Q13070 117 aa10.83□□□□□ -0.68
LIMS1-202ENST00000338045 PAPPA-AS1Q5QFB9 102 aa10.83□□□□□ -0.68
LIMS1-202ENST00000338045 GTF2H5Q6ZYL4 71 aa10.83□□□□□ -0.68
LIMS1-202ENST00000338045 TIMM21Q9BVV7 248 aa10.83□□□□□ -0.68
LIMS1-202ENST00000338045 GYPEP15421 78 aa10.83□□□□□ -0.68
LIMS1-202ENST00000338045 ZC2HC1BQ5TFG8 222 aa10.83□□□□□ -0.68
LIMS1-202ENST00000338045 PAX4O43316 350 aa10.82□□□□□ -0.68
LIMS1-202ENST00000338045 HSD52Q0P140 79 aa10.82□□□□□ -0.68
LIMS1-202ENST00000338045 VSIG2Q96IQ7 327 aa10.82□□□□□ -0.68
LIMS1-202ENST00000338045 AMELXQ99217 191 aa10.82□□□□□ -0.68
LIMS1-202ENST00000338045 IGLV4-69A0A075B6H9 119 aa10.81□□□□□ -0.68
LIMS1-202ENST00000338045 F8WDY8 70 aa10.81□□□□□ -0.68
LIMS1-202ENST00000338045 C12orf74Q32Q52 190 aa10.81□□□□□ -0.68
LIMS1-202ENST00000338045 CEMP1Q6PRD7 247 aaPredicted RBP10.81□□□□□ -0.68
LIMS1-202ENST00000338045 SPATA25Q9BR10 227 aa10.81□□□□□ -0.68
LIMS1-202ENST00000338045 TAX1BP3O14907 124 aa10.81□□□□□ -0.68
LIMS1-202ENST00000338045 HINT1P49773 126 aaPredicted RBP10.81□□□□□ -0.68
LIMS1-202ENST00000338045 MRPS36P82909 103 aaKnown RBP10.81□□□□□ -0.68
LIMS1-202ENST00000338045 TMEM97Q5BJF2 176 aa10.81□□□□□ -0.68
LIMS1-202ENST00000338045 TM2D3Q9BRN9 247 aa10.81□□□□□ -0.68
LIMS1-202ENST00000338045 CSDC2Q9Y534 153 aaKnown RBP10.81□□□□□ -0.68
LIMS1-202ENST00000338045 TRBV25-1A0A075B6N4 114 aa10.8□□□□□ -0.68
LIMS1-202ENST00000338045 TRBV6-8A0A0A6YYG3 113 aa10.8□□□□□ -0.68
LIMS1-202ENST00000338045 ATP6V0E2Q8NHE4 81 aa10.8□□□□□ -0.68
LIMS1-202ENST00000338045 TMEM243Q9BU79 118 aa10.8□□□□□ -0.68
LIMS1-202ENST00000338045 H7C423 109 aa10.79□□□□□ -0.68
LIMS1-202ENST00000338045 F5H768 121 aa10.78□□□□□ -0.68
LIMS1-202ENST00000338045 J3QR89 54 aa10.78□□□□□ -0.68
LIMS1-202ENST00000338045 AMMECR1LQ6DCA0 310 aa10.78□□□□□ -0.68
LIMS1-202ENST00000338045 ERG28Q9UKR5 140 aa10.78□□□□□ -0.68
LIMS1-202ENST00000338045 C11orf86A6NJI1 115 aa10.78□□□□□ -0.68
LIMS1-202ENST00000338045 COX8AP10176 69 aa10.78□□□□□ -0.68
LIMS1-202ENST00000338045 FGF6P10767 208 aa10.78□□□□□ -0.68
LIMS1-202ENST00000338045 Q6ZUT4 128 aa10.78□□□□□ -0.68
LIMS1-202ENST00000338045 Q6ZVH6 145 aa10.78□□□□□ -0.68
LIMS1-202ENST00000338045 NFE4Q86UQ8 179 aa10.78□□□□□ -0.68
LIMS1-202ENST00000338045 SMIM20Q8N5G0 67 aa10.78□□□□□ -0.68
LIMS1-202ENST00000338045 A0A0J9YWU9 116 aa10.77□□□□□ -0.69
LIMS1-202ENST00000338045 A0A0J9YY99 117 aa10.77□□□□□ -0.69
LIMS1-202ENST00000338045 DEFB121Q5J5C9 76 aa10.77□□□□□ -0.69
LIMS1-202ENST00000338045 GAGE12HA6NDE8 117 aa10.76□□□□□ -0.69
LIMS1-202ENST00000338045 SLC25A34Q6PIV7 304 aa10.76□□□□□ -0.69
LIMS1-202ENST00000338045 IGKV2D-26A0A0A0MRZ7 120 aa10.75□□□□□ -0.69
LIMS1-202ENST00000338045 HTN3P15516 51 aa10.75□□□□□ -0.69
LIMS1-202ENST00000338045 DGAT2L7PQ6IED9 249 aa10.75□□□□□ -0.69
LIMS1-202ENST00000338045 TENM3Q9P273 2699 aa10.75□□□□□ -0.69
LIMS1-202ENST00000338045 M0QXV9 152 aa10.74□□□□□ -0.69
LIMS1-202ENST00000338045 UBE2L6O14933 153 aa10.74□□□□□ -0.69
LIMS1-202ENST00000338045 RNASE13Q5GAN3 156 aaKnown RBP10.74□□□□□ -0.69
LIMS1-202ENST00000338045 OR5A1Q8NGJ0 315 aa10.74□□□□□ -0.69
LIMS1-202ENST00000338045 HUWE1Q7Z6Z7 4374 aaKnown RBP10.74□□□□□ -0.69
LIMS1-202ENST00000338045 GAGE10A6NGK3 116 aa10.74□□□□□ -0.69
LIMS1-202ENST00000338045 TCTAP57738 103 aa10.74□□□□□ -0.69
LIMS1-202ENST00000338045 MRPL23Q16540 153 aaKnown RBP10.74□□□□□ -0.69
LIMS1-202ENST00000338045 Q6ZTC4 211 aa10.74□□□□□ -0.69
LIMS1-202ENST00000338045 MRAPQ8TCY5 172 aa10.74□□□□□ -0.69
LIMS1-202ENST00000338045 CHAC1Q9BUX1 264 aa10.74□□□□□ -0.69
LIMS1-202ENST00000338045 CDC42SE2Q9NRR3 84 aa10.74□□□□□ -0.69
LIMS1-202ENST00000338045 TP73-AS1Q9UF72 201 aa10.74□□□□□ -0.69
LIMS1-202ENST00000338045 A0A0J9YXV3 536 aa10.73□□□□□ -0.69
LIMS1-202ENST00000338045 H3BNG1 76 aa10.73□□□□□ -0.69
LIMS1-202ENST00000338045 NMUP48645 174 aa10.73□□□□□ -0.69
LIMS1-202ENST00000338045 SH2D6Q7Z4S9 175 aa10.73□□□□□ -0.69
LIMS1-202ENST00000338045 E9PLD3 99 aa10.72□□□□□ -0.69
LIMS1-202ENST00000338045 UBE2D1P51668 147 aa10.72□□□□□ -0.69
LIMS1-202ENST00000338045 PCP2Q8IVA1 136 aa10.72□□□□□ -0.69
LIMS1-202ENST00000338045 ICOSQ9Y6W8 199 aa10.72□□□□□ -0.69
LIMS1-202ENST00000338045 A0A096LPF7 62 aa10.72□□□□□ -0.69
LIMS1-202ENST00000338045 C11orf45Q8TAV5 145 aa10.72□□□□□ -0.69
LIMS1-202ENST00000338045 CHCHD5Q9BSY4 110 aa10.72□□□□□ -0.69
LIMS1-202ENST00000338045 TINCRA0A1B0GVN0 87 aa10.71□□□□□ -0.69
LIMS1-202ENST00000338045 ZNF22P17026 224 aaPredicted RBP10.71□□□□□ -0.69
LIMS1-202ENST00000338045 TMEM101Q96IK0 257 aa10.71□□□□□ -0.69
LIMS1-202ENST00000338045 KRTAP21-3Q3LHN1 58 aa10.7□□□□□ -0.7
LIMS1-202ENST00000338045 TMEM170BQ5T4T1 132 aa10.7□□□□□ -0.7
LIMS1-202ENST00000338045 NANOS2P60321 138 aaKnown RBP10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms