RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 C20orf203Q8NBC4 194 aa5.64□□□□□ -1.51
LIMCH1-201ENST00000313860 COL16A1Q07092 1604 aaPredicted RBP5.64□□□□□ -1.51
LIMCH1-201ENST00000313860 C11orf1Q9H5F2 150 aa5.64□□□□□ -1.51
LIMCH1-201ENST00000313860 MSMBP08118 114 aa5.64□□□□□ -1.51
LIMCH1-201ENST00000313860 C2orf48Q96LS8 159 aa5.63□□□□□ -1.51
LIMCH1-201ENST00000313860 TPRP12270 2363 aaKnown RBP5.63□□□□□ -1.51
LIMCH1-201ENST00000313860 DEFB113Q30KQ7 82 aa5.63□□□□□ -1.51
LIMCH1-201ENST00000313860 LY6G6CO95867 125 aa5.63□□□□□ -1.51
LIMCH1-201ENST00000313860 C10orf99Q6UWK7 81 aa5.63□□□□□ -1.51
LIMCH1-201ENST00000313860 ESPL1Q14674 2120 aa5.63□□□□□ -1.51
LIMCH1-201ENST00000313860 PRSS33Q8NF86 280 aa5.63□□□□□ -1.51
LIMCH1-201ENST00000313860 LINC00482Q8N8I6 264 aa5.63□□□□□ -1.51
LIMCH1-201ENST00000313860 PRO0255Q9UI72 69 aa5.62□□□□□ -1.51
LIMCH1-201ENST00000313860 PLXNB2O15031 1838 aa5.62□□□□□ -1.51
LIMCH1-201ENST00000313860 IGLV3-12A0A075B6K2 115 aa5.62□□□□□ -1.51
LIMCH1-201ENST00000313860 IGLV6-57P01721 117 aa5.62□□□□□ -1.51
LIMCH1-201ENST00000313860 PLXNA3P51805 1871 aa5.62□□□□□ -1.51
LIMCH1-201ENST00000313860 TLX1NBP0CAT3 122 aa5.62□□□□□ -1.51
LIMCH1-201ENST00000313860 HELZP42694 1942 aaKnown RBP5.62□□□□□ -1.51
LIMCH1-201ENST00000313860 PROK2Q9HC23 129 aa5.62□□□□□ -1.51
LIMCH1-201ENST00000313860 Q6ZSR3 168 aa5.62□□□□□ -1.51
LIMCH1-201ENST00000313860 PCNTO95613 3336 aa5.62□□□□□ -1.51
LIMCH1-201ENST00000313860 BRWD3Q6RI45 1802 aa5.61□□□□□ -1.51
LIMCH1-201ENST00000313860 SRRM5B3KS81 715 aa5.61□□□□□ -1.51
LIMCH1-201ENST00000313860 LINC00474Q9P2X8 69 aa5.61□□□□□ -1.51
LIMCH1-201ENST00000313860 ATG2BQ96BY7 2078 aa5.61□□□□□ -1.51
LIMCH1-201ENST00000313860 DOCK11Q5JSL3 2073 aa5.61□□□□□ -1.51
LIMCH1-201ENST00000313860 SPACA4Q8TDM5 124 aa5.61□□□□□ -1.51
LIMCH1-201ENST00000313860 PATJQ8NI35 1801 aa5.61□□□□□ -1.51
LIMCH1-201ENST00000313860 RSPO1Q2MKA7 263 aaPredicted RBP5.61□□□□□ -1.51
LIMCH1-201ENST00000313860 LINC01556Q5JQF7 62 aa5.61□□□□□ -1.51
LIMCH1-201ENST00000313860 MAP6D1Q9H9H5 199 aa5.61□□□□□ -1.51
LIMCH1-201ENST00000313860 B3GALT5-AS1P59052 145 aa5.61□□□□□ -1.51
LIMCH1-201ENST00000313860 TP53TG3Q9ULZ0 132 aa5.61□□□□□ -1.51
LIMCH1-201ENST00000313860 PRAC2D3DTV9 90 aa5.6□□□□□ -1.51
LIMCH1-201ENST00000313860 IGLV7-46A0A075B6I9 117 aa5.6□□□□□ -1.51
LIMCH1-201ENST00000313860 SPRR3Q9UBC9 169 aa5.6□□□□□ -1.51
LIMCH1-201ENST00000313860 CASP8AP2Q9UKL3 1982 aa5.6□□□□□ -1.51
LIMCH1-201ENST00000313860 ADORA2A-AS1P86434 159 aa5.6□□□□□ -1.51
LIMCH1-201ENST00000313860 Q8TCH9 128 aa5.6□□□□□ -1.51
LIMCH1-201ENST00000313860 FRMD6-AS1P0C7T7 363 aa5.6□□□□□ -1.51
LIMCH1-201ENST00000313860 COX6B2Q6YFQ2 88 aa5.6□□□□□ -1.51
LIMCH1-201ENST00000313860 ZNF407Q9C0G0 2248 aa5.6□□□□□ -1.51
LIMCH1-201ENST00000313860 WT1-ASQ06250 92 aa5.59□□□□□ -1.51
LIMCH1-201ENST00000313860 C11orf71Q6IPW1 123 aa5.59□□□□□ -1.51
LIMCH1-201ENST00000313860 DEFB131BA0A096LNP1 70 aa5.59□□□□□ -1.51
LIMCH1-201ENST00000313860 Q6ZQT0 140 aa5.59□□□□□ -1.51
LIMCH1-201ENST00000313860 SMAD5-AS1Q9Y6J3 95 aa5.59□□□□□ -1.51
LIMCH1-201ENST00000313860 INAFM1C9JVW0 142 aa5.59□□□□□ -1.51
LIMCH1-201ENST00000313860 C19orf71A6NCJ1 209 aa5.59□□□□□ -1.52
LIMCH1-201ENST00000313860 UTRNP46939 3433 aa5.59□□□□□ -1.52
LIMCH1-201ENST00000313860 COA5Q86WW8 74 aa5.59□□□□□ -1.52
LIMCH1-201ENST00000313860 RP1P56715 2156 aa5.58□□□□□ -1.52
LIMCH1-201ENST00000313860 AVPP01185 164 aa5.58□□□□□ -1.52
LIMCH1-201ENST00000313860 MTCL1Q9Y4B5 1905 aaKnown RBP5.58□□□□□ -1.52
LIMCH1-201ENST00000313860 PRR3P79522 188 aaKnown RBP5.58□□□□□ -1.52
LIMCH1-201ENST00000313860 Q6ZSV7 163 aa5.58□□□□□ -1.52
LIMCH1-201ENST00000313860 Q6ZTI0 123 aa5.58□□□□□ -1.52
LIMCH1-201ENST00000313860 NLRC5Q86WI3 1866 aa5.58□□□□□ -1.52
LIMCH1-201ENST00000313860 KIF26AQ9ULI4 1882 aaPredicted RBP5.58□□□□□ -1.52
LIMCH1-201ENST00000313860 RTTNQ86VV8 2226 aa5.58□□□□□ -1.52
LIMCH1-201ENST00000313860 SVILO95425 2214 aa5.58□□□□□ -1.52
LIMCH1-201ENST00000313860 KIAA0087Q14695 138 aa5.57□□□□□ -1.52
LIMCH1-201ENST00000313860 C2orf91Q6ZV80 131 aa5.57□□□□□ -1.52
LIMCH1-201ENST00000313860 RBM12B-AS1Q9P1G2 102 aa5.57□□□□□ -1.52
LIMCH1-201ENST00000313860 SAP25Q8TEE9 199 aa5.57□□□□□ -1.52
LIMCH1-201ENST00000313860 WDR90Q96KV7 1748 aa5.57□□□□□ -1.52
LIMCH1-201ENST00000313860 ZNF80P51504 273 aaPredicted RBP5.57□□□□□ -1.52
LIMCH1-201ENST00000313860 TRIP12Q14669 1992 aaPredicted RBP5.57□□□□□ -1.52
LIMCH1-201ENST00000313860 A0A0C4DFX4 3053 aa5.56□□□□□ -1.52
LIMCH1-201ENST00000313860 HEATR5AQ86XA9 2040 aa5.56□□□□□ -1.52
LIMCH1-201ENST00000313860 C4orf3Q8WVX3 66 aa5.56□□□□□ -1.52
LIMCH1-201ENST00000313860 LOC101927531A0A1B0GV80 90 aa5.56□□□□□ -1.52
LIMCH1-201ENST00000313860 RITA1Q96K30 269 aa5.56□□□□□ -1.52
LIMCH1-201ENST00000313860 DENND4CQ5VZ89 1909 aa5.56□□□□□ -1.52
LIMCH1-201ENST00000313860 DOPEY2Q9Y3R5 2298 aa5.56□□□□□ -1.52
LIMCH1-201ENST00000313860 KRTAP16-1A8MUX0 517 aa5.56□□□□□ -1.52
LIMCH1-201ENST00000313860 CSRP1P21291 193 aaKnown RBP5.56□□□□□ -1.52
LIMCH1-201ENST00000313860 LINC00336Q6ZUF6 198 aa5.56□□□□□ -1.52
LIMCH1-201ENST00000313860 Q6ZS46 218 aa5.56□□□□□ -1.52
LIMCH1-201ENST00000313860 PIP4P1Q86T03 277 aa5.56□□□□□ -1.52
LIMCH1-201ENST00000313860 CYP4F30PQ9H0H9 118 aa5.56□□□□□ -1.52
LIMCH1-201ENST00000313860 PCNX2A6NKB5 2137 aa5.56□□□□□ -1.52
LIMCH1-201ENST00000313860 IGLV5-45A0A087WSX0 123 aa5.55□□□□□ -1.52
LIMCH1-201ENST00000313860 UNQ9165/PRO28630Q6UXU0 137 aa5.55□□□□□ -1.52
LIMCH1-201ENST00000313860 PLXNB3Q9ULL4 1909 aa5.55□□□□□ -1.52
LIMCH1-201ENST00000313860 LINC00846Q9NV44 126 aa5.55□□□□□ -1.52
LIMCH1-201ENST00000313860 TNS1Q9HBL0 1735 aaKnown RBP5.55□□□□□ -1.52
LIMCH1-201ENST00000313860 MOBPQ13875 183 aa5.55□□□□□ -1.52
LIMCH1-201ENST00000313860 LINC00114Q6XXX2 140 aa5.55□□□□□ -1.52
LIMCH1-201ENST00000313860 LENEPQ9Y5L5 61 aa5.55□□□□□ -1.52
LIMCH1-201ENST00000313860 SMIM10L1P0DMW3 83 aa5.55□□□□□ -1.52
LIMCH1-201ENST00000313860 SMIM10Q96HG1 83 aa5.55□□□□□ -1.52
LIMCH1-201ENST00000313860 IGLV5-48A0A075B6I7 105 aa5.55□□□□□ -1.52
LIMCH1-201ENST00000313860 PRO3102Q9H379 93 aa5.55□□□□□ -1.52
LIMCH1-201ENST00000313860 ANAPC1Q9H1A4 1944 aa5.55□□□□□ -1.52
LIMCH1-201ENST00000313860 AHCTF1Q8WYP5 2266 aa5.55□□□□□ -1.52
LIMCH1-201ENST00000313860 NUP210Q8TEM1 1887 aaPredicted RBP5.54□□□□□ -1.52
LIMCH1-201ENST00000313860 PINLYPA6NC86 204 aa5.54□□□□□ -1.52
LIMCH1-201ENST00000313860 FAM215AQ9Y5M1 114 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms