RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 PF4V1P10720 104 aa9.84□□□□□ -0.83
SKA3-201ENST00000298260 ADORA2A-AS1P86434 159 aa9.84□□□□□ -0.83
SKA3-201ENST00000298260 SOSTDC1Q6X4U4 206 aa9.84□□□□□ -0.83
SKA3-201ENST00000298260 LINC00643Q86TS7 51 aa9.84□□□□□ -0.83
SKA3-201ENST00000298260 C9orf85Q96MD7 179 aa9.84□□□□□ -0.83
SKA3-201ENST00000298260 GNLYP22749 145 aa9.83□□□□□ -0.84
SKA3-201ENST00000298260 C2orf48Q96LS8 159 aa9.83□□□□□ -0.84
SKA3-201ENST00000298260 SPANXA1Q9NS26 97 aa9.83□□□□□ -0.84
SKA3-201ENST00000298260 Q6ZSN1 163 aa9.83□□□□□ -0.84
SKA3-201ENST00000298260 FASNP49327 2511 aaKnown RBP9.83□□□□□ -0.84
SKA3-201ENST00000298260 CCDC168Q8NDH2 2452 aa9.83□□□□□ -0.84
SKA3-201ENST00000298260 SYNJ2BPP57105 145 aa9.83□□□□□ -0.84
SKA3-201ENST00000298260 COX6A2Q02221 97 aa9.83□□□□□ -0.84
SKA3-201ENST00000298260 C5orf47Q569G3 176 aa9.83□□□□□ -0.84
SKA3-201ENST00000298260 DSCR8Q96T75 97 aa9.83□□□□□ -0.84
SKA3-201ENST00000298260 J3KT08 172 aa9.82□□□□□ -0.84
SKA3-201ENST00000298260 NDUFA4O00483 81 aa9.82□□□□□ -0.84
SKA3-201ENST00000298260 LINC00308Q8TCZ7 52 aa9.82□□□□□ -0.84
SKA3-201ENST00000298260 Q9H8V8 135 aa9.82□□□□□ -0.84
SKA3-201ENST00000298260 ABCA2Q9BZC7 2435 aa9.82□□□□□ -0.84
SKA3-201ENST00000298260 COX7CP15954 63 aa9.82□□□□□ -0.84
SKA3-201ENST00000298260 TENM4Q6N022 2769 aa9.81□□□□□ -0.84
SKA3-201ENST00000298260 TLN2Q9Y4G6 2542 aa9.81□□□□□ -0.84
SKA3-201ENST00000298260 NBPF19A0A087WUL8 3843 aa9.81□□□□□ -0.84
SKA3-201ENST00000298260 OXTP01178 125 aa9.81□□□□□ -0.84
SKA3-201ENST00000298260 PIK3CD-AS1Q5SR53 167 aa9.81□□□□□ -0.84
SKA3-201ENST00000298260 LINC00467Q9BRT7 94 aa9.81□□□□□ -0.84
SKA3-201ENST00000298260 IMUPQ9GZP8 106 aa9.81□□□□□ -0.84
SKA3-201ENST00000298260 COX7A2LO14548 114 aa9.8□□□□□ -0.84
SKA3-201ENST00000298260 BLCAPP62952 87 aa9.8□□□□□ -0.84
SKA3-201ENST00000298260 BBC3Q96PG8 261 aaPredicted RBP9.8□□□□□ -0.84
SKA3-201ENST00000298260 NOTCH2Q04721 2471 aa9.8□□□□□ -0.84
SKA3-201ENST00000298260 IGHV1OR15-1A0A075B7D0 117 aa9.79□□□□□ -0.84
SKA3-201ENST00000298260 A0A1W2PPR1 153 aa9.79□□□□□ -0.84
SKA3-201ENST00000298260 KLK9Q2XQG4 91 aa9.79□□□□□ -0.84
SKA3-201ENST00000298260 ACYP1P07311 99 aa9.78□□□□□ -0.84
SKA3-201ENST00000298260 C4orf26Q17RF5 130 aa9.78□□□□□ -0.84
SKA3-201ENST00000298260 BEAN1Q3B7T3 259 aa9.78□□□□□ -0.84
SKA3-201ENST00000298260 C5orf38Q86SI9 138 aa9.78□□□□□ -0.84
SKA3-201ENST00000298260 FAM223BA6NKX1 122 aa9.78□□□□□ -0.84
SKA3-201ENST00000298260 RBMY1A1P0DJD3 496 aaKnown RBP9.78□□□□□ -0.84
SKA3-201ENST00000298260 RBMY1CP0DJD4 496 aa9.78□□□□□ -0.84
SKA3-201ENST00000298260 RBMY1FQ15415 496 aaKnown RBP9.78□□□□□ -0.84
SKA3-201ENST00000298260 FAM223AQ8IWN6 122 aa9.78□□□□□ -0.84
SKA3-201ENST00000298260 RNF152Q8N8N0 203 aa9.78□□□□□ -0.84
SKA3-201ENST00000298260 C14orf132Q9NPU4 83 aa9.78□□□□□ -0.84
SKA3-201ENST00000298260 UBE2D4Q9Y2X8 147 aa9.78□□□□□ -0.84
SKA3-201ENST00000298260 FBN2P35556 2912 aa9.78□□□□□ -0.84
SKA3-201ENST00000298260 A0A1B0GX51 115 aa9.78□□□□□ -0.84
SKA3-201ENST00000298260 CHCHD7Q9BUK0 85 aa9.78□□□□□ -0.84
SKA3-201ENST00000298260 TINCRA0A1B0GVN0 87 aa9.77□□□□□ -0.85
SKA3-201ENST00000298260 C10orf99Q6UWK7 81 aa9.77□□□□□ -0.85
SKA3-201ENST00000298260 C19orf54Q5BKX5 351 aa9.77□□□□□ -0.85
SKA3-201ENST00000298260 C19orf84I3L1E1 186 aa9.76□□□□□ -0.85
SKA3-201ENST00000298260 LRRC75A-AS1Q8N1F1 130 aa9.76□□□□□ -0.85
SKA3-201ENST00000298260 PEMTQ9UBM1 199 aa9.76□□□□□ -0.85
SKA3-201ENST00000298260 PYGO1Q9Y3Y4 419 aa9.76□□□□□ -0.85
SKA3-201ENST00000298260 MOB4Q9Y3A3 225 aa9.75□□□□□ -0.85
SKA3-201ENST00000298260 HECTD1Q9ULT8 2610 aa9.75□□□□□ -0.85
SKA3-201ENST00000298260 BPESC1Q9GZL8 116 aa9.75□□□□□ -0.85
SKA3-201ENST00000298260 HRCT1Q6UXD1 115 aa9.74□□□□□ -0.85
SKA3-201ENST00000298260 ANKRD17O75179 2603 aaKnown RBP9.74□□□□□ -0.85
SKA3-201ENST00000298260 TRACP01848 142 aa9.74□□□□□ -0.85
SKA3-201ENST00000298260 ATP5G1P05496 136 aa9.74□□□□□ -0.85
SKA3-201ENST00000298260 CRYGAP11844 174 aa9.74□□□□□ -0.85
SKA3-201ENST00000298260 NAV2Q8IVL1 2488 aa9.74□□□□□ -0.85
SKA3-201ENST00000298260 UBR5O95071 2799 aaPredicted RBP9.74□□□□□ -0.85
SKA3-201ENST00000298260 NDUFA1O15239 70 aa9.74□□□□□ -0.85
SKA3-201ENST00000298260 CIRBPQ14011 172 aaKnown RBP9.74□□□□□ -0.85
SKA3-201ENST00000298260 C11orf71Q6IPW1 123 aa9.74□□□□□ -0.85
SKA3-201ENST00000298260 WFDC9Q8NEX5 89 aa9.74□□□□□ -0.85
SKA3-201ENST00000298260 DPH3Q96FX2 82 aa9.74□□□□□ -0.85
SKA3-201ENST00000298260 PRIMA1Q86XR5 153 aa9.73□□□□□ -0.85
SKA3-201ENST00000298260 LINC00846Q9NV44 126 aa9.73□□□□□ -0.85
SKA3-201ENST00000298260 GCN1Q92616 2671 aaKnown RBP9.73□□□□□ -0.85
SKA3-201ENST00000298260 A0A087WYN8 130 aa9.73□□□□□ -0.85
SKA3-201ENST00000298260 IGHV3OR16-12A0A075B7B8 117 aa9.72□□□□□ -0.85
SKA3-201ENST00000298260 DGAT2L7PQ6IED9 249 aa9.72□□□□□ -0.85
SKA3-201ENST00000298260 SLPIP03973 132 aa9.72□□□□□ -0.85
SKA3-201ENST00000298260 MALP21145 153 aa9.72□□□□□ -0.85
SKA3-201ENST00000298260 ITPR2Q14571 2701 aa9.71□□□□□ -0.86
SKA3-201ENST00000298260 HILS1P60008 231 aa9.71□□□□□ -0.86
SKA3-201ENST00000298260 HIST1H4AP62805 103 aaKnown RBP9.71□□□□□ -0.86
SKA3-201ENST00000298260 PIMREGQ9BSJ6 248 aa9.71□□□□□ -0.86
SKA3-201ENST00000298260 H3BUX3 64 aa9.7□□□□□ -0.86
SKA3-201ENST00000298260 ATOX1O00244 68 aa9.7□□□□□ -0.86
SKA3-201ENST00000298260 DNAL4O96015 105 aa9.7□□□□□ -0.86
SKA3-201ENST00000298260 RPL18AQ02543 176 aaKnown RBP9.7□□□□□ -0.86
SKA3-201ENST00000298260 LINC01561Q8N1V8 128 aa9.7□□□□□ -0.86
SKA3-201ENST00000298260 NCR3O14931 201 aa9.7□□□□□ -0.86
SKA3-201ENST00000298260 CXCL5P42830 114 aa9.7□□□□□ -0.86
SKA3-201ENST00000298260 CFHR3Q02985 330 aa9.7□□□□□ -0.86
SKA3-201ENST00000298260 LINC00242Q5T6M2 205 aa9.7□□□□□ -0.86
SKA3-201ENST00000298260 TIMM17BO60830 172 aa9.69□□□□□ -0.86
SKA3-201ENST00000298260 IGHV4-38-2P0DP08 117 aa9.69□□□□□ -0.86
SKA3-201ENST00000298260 LMO4P61968 165 aa9.69□□□□□ -0.86
SKA3-201ENST00000298260 OR13C6PQ8NH95 151 aa9.69□□□□□ -0.86
SKA3-201ENST00000298260 C10orf105Q8TEF2 133 aa9.69□□□□□ -0.86
SKA3-201ENST00000298260 LINC00337Q8N6G1 96 aa9.69□□□□□ -0.86
SKA3-201ENST00000298260 SONP18583 2426 aaKnown RBP9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms