RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 IGHV4-30-4P0DP06 118 aa11.11□□□□□ -0.63
LSM6-201ENST00000296581 KIR2DL4Q99706 377 aa11.11□□□□□ -0.63
LSM6-201ENST00000296581 DKK2Q9UBU2 259 aa11.11□□□□□ -0.63
LSM6-201ENST00000296581 NDUFV3P56181 108 aaKnown RBP11.11□□□□□ -0.63
LSM6-201ENST00000296581 TOMM6Q96B49 74 aa11.11□□□□□ -0.63
LSM6-201ENST00000296581 P0DMU3 169 aa11.1□□□□□ -0.63
LSM6-201ENST00000296581 FAM231AP0DMU4 169 aa11.1□□□□□ -0.63
LSM6-201ENST00000296581 FAM231CP0DMU5 169 aa11.1□□□□□ -0.63
LSM6-201ENST00000296581 PPDPFLQ8WWR9 84 aa11.1□□□□□ -0.63
LSM6-201ENST00000296581 CARD19Q96LW7 228 aa11.1□□□□□ -0.63
LSM6-201ENST00000296581 VCX2Q9H322 139 aa11.1□□□□□ -0.63
LSM6-201ENST00000296581 ATP5LO75964 103 aa11.1□□□□□ -0.63
LSM6-201ENST00000296581 DNAJC30Q96LL9 226 aa11.1□□□□□ -0.63
LSM6-201ENST00000296581 NEXN-AS1Q8NBZ9 246 aa11.09□□□□□ -0.63
LSM6-201ENST00000296581 I3L3M4 83 aa11.09□□□□□ -0.63
LSM6-201ENST00000296581 C2orf66Q6UXQ4 117 aa11.09□□□□□ -0.63
LSM6-201ENST00000296581 COL6A5A8TX70 2615 aa11.08□□□□□ -0.63
LSM6-201ENST00000296581 TAL2Q16559 108 aa11.08□□□□□ -0.64
LSM6-201ENST00000296581 DEFB135Q30KP9 77 aa11.08□□□□□ -0.64
LSM6-201ENST00000296581 LINC00612Q8N6U2 182 aa11.08□□□□□ -0.64
LSM6-201ENST00000296581 Q9UF83 564 aa11.08□□□□□ -0.64
LSM6-201ENST00000296581 M0QXV9 152 aa11.07□□□□□ -0.64
LSM6-201ENST00000296581 TSHBP01222 138 aa11.07□□□□□ -0.64
LSM6-201ENST00000296581 RHOHQ15669 191 aa11.07□□□□□ -0.64
LSM6-201ENST00000296581 PPDPFQ9H3Y8 114 aa11.07□□□□□ -0.64
LSM6-201ENST00000296581 TRBV20-1A0A075B6N2 111 aa11.07□□□□□ -0.64
LSM6-201ENST00000296581 LINC01549A6NIU2 74 aa11.07□□□□□ -0.64
LSM6-201ENST00000296581 A8MZ25 164 aa11.07□□□□□ -0.64
LSM6-201ENST00000296581 HHLA3Q9XRX5 114 aa11.07□□□□□ -0.64
LSM6-201ENST00000296581 CMYA5Q8N3K9 4069 aa11.07□□□□□ -0.64
LSM6-201ENST00000296581 TRGV2A0A075B6R0 118 aa11.06□□□□□ -0.64
LSM6-201ENST00000296581 TEN1Q86WV5 123 aa11.06□□□□□ -0.64
LSM6-201ENST00000296581 SCGB3A1Q96QR1 104 aa11.06□□□□□ -0.64
LSM6-201ENST00000296581 TRBV10-1A0A0K0K1A3 114 aa11.05□□□□□ -0.64
LSM6-201ENST00000296581 EMP1P54849 157 aa11.05□□□□□ -0.64
LSM6-201ENST00000296581 ZMAT4Q9H898 229 aa11.05□□□□□ -0.64
LSM6-201ENST00000296581 K7EQD1 137 aa11.05□□□□□ -0.64
LSM6-201ENST00000296581 GAGE2BQ13066 116 aa11.05□□□□□ -0.64
LSM6-201ENST00000296581 GAGE2EQ4V326 116 aa11.05□□□□□ -0.64
LSM6-201ENST00000296581 DEFB104AQ8WTQ1 72 aa11.05□□□□□ -0.64
LSM6-201ENST00000296581 GAGE2DQ9UEU5 116 aa11.05□□□□□ -0.64
LSM6-201ENST00000296581 TMEM262E9PQX1 116 aa11.04□□□□□ -0.64
LSM6-201ENST00000296581 PRSS1P07477 247 aa11.04□□□□□ -0.64
LSM6-201ENST00000296581 TP53TG1Q9Y2A0 90 aa11.04□□□□□ -0.64
LSM6-201ENST00000296581 IFITM1P13164 125 aa11.04□□□□□ -0.64
LSM6-201ENST00000296581 SPANXA1Q9NS26 97 aa11.04□□□□□ -0.64
LSM6-201ENST00000296581 SLC25A29Q8N8R3 303 aa11.03□□□□□ -0.64
LSM6-201ENST00000296581 IGIPA6NJ69 53 aa11.02□□□□□ -0.64
LSM6-201ENST00000296581 MIFP14174 115 aa11.02□□□□□ -0.64
LSM6-201ENST00000296581 TTC32Q5I0X7 151 aa11.02□□□□□ -0.64
LSM6-201ENST00000296581 C20orf203Q8NBC4 194 aa11.02□□□□□ -0.64
LSM6-201ENST00000296581 HIST1H4GQ99525 98 aa11.02□□□□□ -0.64
LSM6-201ENST00000296581 TRAV12-1A0A0B4J245 112 aa11.02□□□□□ -0.65
LSM6-201ENST00000296581 IGHV4-28A0A0C4DH34 117 aa11.02□□□□□ -0.65
LSM6-201ENST00000296581 TRBV6-4A0A1B0GX49 114 aa11.02□□□□□ -0.65
LSM6-201ENST00000296581 LYRM9A8MSI8 78 aa11.02□□□□□ -0.65
LSM6-201ENST00000296581 RPL39P62891 51 aaKnown RBP11.02□□□□□ -0.65
LSM6-201ENST00000296581 Q8NAQ8 132 aa11.02□□□□□ -0.65
LSM6-201ENST00000296581 TRBV7-3A0A075B6L6 115 aa11.01□□□□□ -0.65
LSM6-201ENST00000296581 IGKCP01834 107 aa11.01□□□□□ -0.65
LSM6-201ENST00000296581 FHL2Q14192 279 aa11.01□□□□□ -0.65
LSM6-201ENST00000296581 C5orf47Q569G3 176 aa11.01□□□□□ -0.65
LSM6-201ENST00000296581 MAPKAPK5-AS1Q8N8E1 139 aa11.01□□□□□ -0.65
LSM6-201ENST00000296581 TIMM17AQ99595 171 aa11.01□□□□□ -0.65
LSM6-201ENST00000296581 PSMB2P49721 201 aa11.01□□□□□ -0.65
LSM6-201ENST00000296581 RPL36AP83881 106 aaKnown RBP11.01□□□□□ -0.65
LSM6-201ENST00000296581 ZNRF2Q8NHG8 242 aa11.01□□□□□ -0.65
LSM6-201ENST00000296581 RPL36ALQ969Q0 106 aaKnown RBP11.01□□□□□ -0.65
LSM6-201ENST00000296581 TMEM141Q96I45 108 aa11.01□□□□□ -0.65
LSM6-201ENST00000296581 CSDC2Q9Y534 153 aaKnown RBP11.01□□□□□ -0.65
LSM6-201ENST00000296581 PKD1L1Q8TDX9 2849 aa11□□□□□ -0.65
LSM6-201ENST00000296581 SNCGO76070 127 aa11□□□□□ -0.65
LSM6-201ENST00000296581 DEFB130BP0DP73 79 aa11□□□□□ -0.65
LSM6-201ENST00000296581 DEFB130AP0DP74 79 aa11□□□□□ -0.65
LSM6-201ENST00000296581 FAM222AQ5U5X8 452 aa11□□□□□ -0.65
LSM6-201ENST00000296581 BAALCQ8WXS3 180 aa11□□□□□ -0.65
LSM6-201ENST00000296581 TRGV4A0A0C4DH28 118 aa11□□□□□ -0.65
LSM6-201ENST00000296581 ZC2HC1BQ5TFG8 222 aa11□□□□□ -0.65
LSM6-201ENST00000296581 ANK2Q01484 3957 aa10.99□□□□□ -0.65
LSM6-201ENST00000296581 UBE2D3P61077 147 aa10.99□□□□□ -0.65
LSM6-201ENST00000296581 UBE2D2P62837 147 aa10.99□□□□□ -0.65
LSM6-201ENST00000296581 MEIG1Q5JSS6 88 aa10.99□□□□□ -0.65
LSM6-201ENST00000296581 Q6Q795 121 aa10.98□□□□□ -0.65
LSM6-201ENST00000296581 CHCHD7Q9BUK0 85 aa10.98□□□□□ -0.65
LSM6-201ENST00000296581 DNAH3Q8TD57 4116 aa10.98□□□□□ -0.65
LSM6-201ENST00000296581 IGHV3-38A0A0C4DH36 116 aa10.98□□□□□ -0.65
LSM6-201ENST00000296581 DAZ4Q86SG3 579 aaKnown RBP10.98□□□□□ -0.65
LSM6-201ENST00000296581 SBSPONQ8IVN8 264 aa10.98□□□□□ -0.65
LSM6-201ENST00000296581 MDFIQ99750 246 aa10.98□□□□□ -0.65
LSM6-201ENST00000296581 DAZ3Q9NR90 486 aaKnown RBP10.98□□□□□ -0.65
LSM6-201ENST00000296581 MRPL35Q9NZE8 188 aaKnown RBP10.98□□□□□ -0.65
LSM6-201ENST00000296581 NBEAL2Q6ZNJ1 2754 aa10.97□□□□□ -0.65
LSM6-201ENST00000296581 DEFB4AO15263 64 aa10.97□□□□□ -0.65
LSM6-201ENST00000296581 DPM2O94777 84 aa10.97□□□□□ -0.65
LSM6-201ENST00000296581 ANKRD29Q8N6D5 301 aa10.97□□□□□ -0.65
LSM6-201ENST00000296581 TMEM126AQ9H061 195 aa10.97□□□□□ -0.65
LSM6-201ENST00000296581 F8VRH5 84 aa10.96□□□□□ -0.65
LSM6-201ENST00000296581 PYGO1Q9Y3Y4 419 aa10.96□□□□□ -0.65
LSM6-201ENST00000296581 LOC107984156A0A0G2JMH3 177 aa10.96□□□□□ -0.66
LSM6-201ENST00000296581 ARL17AQ8IVW1 177 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms