RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 FGF6P10767 208 aa11.54□□□□□ -0.56
USP4-201ENST00000265560 MAPKAPK5-AS1Q8N8E1 139 aa11.54□□□□□ -0.56
USP4-201ENST00000265560 PRO0255Q9UI72 69 aa11.54□□□□□ -0.56
USP4-201ENST00000265560 K7EIL1 84 aa11.54□□□□□ -0.56
USP4-201ENST00000265560 CHAC1Q9BUX1 264 aa11.53□□□□□ -0.56
USP4-201ENST00000265560 A0A0J9YWU9 116 aa11.53□□□□□ -0.56
USP4-201ENST00000265560 CHCHD5Q9BSY4 110 aa11.53□□□□□ -0.56
USP4-201ENST00000265560 HUWE1Q7Z6Z7 4374 aaKnown RBP11.52□□□□□ -0.56
USP4-201ENST00000265560 ATP5G1P05496 136 aa11.52□□□□□ -0.56
USP4-201ENST00000265560 MPV17L2Q567V2 206 aa11.52□□□□□ -0.57
USP4-201ENST00000265560 UBE2L6O14933 153 aa11.51□□□□□ -0.57
USP4-201ENST00000265560 C12orf74Q32Q52 190 aa11.51□□□□□ -0.57
USP4-201ENST00000265560 AMMECR1LQ6DCA0 310 aa11.51□□□□□ -0.57
USP4-201ENST00000265560 ATP6V0E2Q8NHE4 81 aa11.51□□□□□ -0.57
USP4-201ENST00000265560 TRAV13-1A0A0B4J241 112 aa11.51□□□□□ -0.57
USP4-201ENST00000265560 C2orf91Q6ZV80 131 aa11.51□□□□□ -0.57
USP4-201ENST00000265560 TMEM243Q9BU79 118 aa11.51□□□□□ -0.57
USP4-201ENST00000265560 TRBV25-1A0A075B6N4 114 aa11.51□□□□□ -0.57
USP4-201ENST00000265560 PYGO1Q9Y3Y4 419 aa11.51□□□□□ -0.57
USP4-201ENST00000265560 Q6ZTC4 211 aa11.5□□□□□ -0.57
USP4-201ENST00000265560 Q8N3U1 123 aa11.5□□□□□ -0.57
USP4-201ENST00000265560 TRBV6-8A0A0A6YYG3 113 aa11.5□□□□□ -0.57
USP4-201ENST00000265560 M0R143 59 aa11.5□□□□□ -0.57
USP4-201ENST00000265560 A8MZ25 164 aa11.49□□□□□ -0.57
USP4-201ENST00000265560 TMEM262E9PQX1 116 aa11.49□□□□□ -0.57
USP4-201ENST00000265560 BOD1L2Q8IYS8 172 aa11.49□□□□□ -0.57
USP4-201ENST00000265560 LINC01549A6NIU2 74 aa11.49□□□□□ -0.57
USP4-201ENST00000265560 NANOS2P60321 138 aaKnown RBP11.49□□□□□ -0.57
USP4-201ENST00000265560 AMELXQ99217 191 aa11.49□□□□□ -0.57
USP4-201ENST00000265560 SPANXA1Q9NS26 97 aa11.49□□□□□ -0.57
USP4-201ENST00000265560 TENM2Q9NT68 2774 aa11.49□□□□□ -0.57
USP4-201ENST00000265560 IGLV4-60A0A075B6I1 120 aa11.49□□□□□ -0.57
USP4-201ENST00000265560 CIDEAO60543 219 aa11.49□□□□□ -0.57
USP4-201ENST00000265560 TRAV8-3A0A0A6YYJ7 113 aa11.47□□□□□ -0.57
USP4-201ENST00000265560 TSPEAR-AS2P59090 65 aa11.47□□□□□ -0.57
USP4-201ENST00000265560 COX6A2Q02221 97 aa11.47□□□□□ -0.57
USP4-201ENST00000265560 ZNF22P17026 224 aaPredicted RBP11.47□□□□□ -0.57
USP4-201ENST00000265560 CLPSL2Q6UWE3 100 aa11.47□□□□□ -0.57
USP4-201ENST00000265560 Q6ZVH6 145 aa11.47□□□□□ -0.57
USP4-201ENST00000265560 OR5A1Q8NGJ0 315 aa11.47□□□□□ -0.57
USP4-201ENST00000265560 PAPPA-AS1Q5QFB9 102 aa11.46□□□□□ -0.58
USP4-201ENST00000265560 MRPS16Q9Y3D3 137 aaKnown RBP11.46□□□□□ -0.58
USP4-201ENST00000265560 GTSF1LQ9H1H1 148 aa11.45□□□□□ -0.58
USP4-201ENST00000265560 CDC42SE2Q9NRR3 84 aa11.45□□□□□ -0.58
USP4-201ENST00000265560 LINC00469Q8N7U9 141 aa11.45□□□□□ -0.58
USP4-201ENST00000265560 A0A1B0GV90 55 aa11.44□□□□□ -0.58
USP4-201ENST00000265560 SPINK8P0C7L1 97 aa11.44□□□□□ -0.58
USP4-201ENST00000265560 K7EP13 123 aa11.44□□□□□ -0.58
USP4-201ENST00000265560 CDKN2A-AS1Q9UH64 79 aa11.44□□□□□ -0.58
USP4-201ENST00000265560 E9PLD3 99 aa11.44□□□□□ -0.58
USP4-201ENST00000265560 LURAP1LQ8IV03 231 aa11.44□□□□□ -0.58
USP4-201ENST00000265560 C2orf88Q9BSF0 95 aa11.44□□□□□ -0.58
USP4-201ENST00000265560 NFE4Q86UQ8 179 aa11.43□□□□□ -0.58
USP4-201ENST00000265560 GEMIN7Q9H840 131 aaKnown RBP11.43□□□□□ -0.58
USP4-201ENST00000265560 UBE2D1P51668 147 aa11.43□□□□□ -0.58
USP4-201ENST00000265560 TMEM97Q5BJF2 176 aa11.43□□□□□ -0.58
USP4-201ENST00000265560 PLEKHB2Q96CS7 222 aa11.43□□□□□ -0.58
USP4-201ENST00000265560 ZNF815PA8K554 130 aa11.42□□□□□ -0.58
USP4-201ENST00000265560 MRPS36P82909 103 aaKnown RBP11.42□□□□□ -0.58
USP4-201ENST00000265560 TMEM101Q96IK0 257 aa11.42□□□□□ -0.58
USP4-201ENST00000265560 ZNF25P17030 456 aaPredicted RBP11.42□□□□□ -0.58
USP4-201ENST00000265560 MEGF8Q7Z7M0 2845 aa11.41□□□□□ -0.58
USP4-201ENST00000265560 TMEM223A0PJW6 202 aa11.41□□□□□ -0.58
USP4-201ENST00000265560 LINC00242Q5T6M2 205 aa11.41□□□□□ -0.58
USP4-201ENST00000265560 C11orf45Q8TAV5 145 aa11.41□□□□□ -0.58
USP4-201ENST00000265560 DNAH9Q9NYC9 4486 aa11.41□□□□□ -0.58
USP4-201ENST00000265560 MRPL52Q86TS9 123 aaKnown RBP11.41□□□□□ -0.58
USP4-201ENST00000265560 HERVK_113P61574 105 aa11.4□□□□□ -0.58
USP4-201ENST00000265560 TIMM21Q9BVV7 248 aa11.4□□□□□ -0.58
USP4-201ENST00000265560 MYMXA0A1B0GTQ4 84 aa11.4□□□□□ -0.59
USP4-201ENST00000265560 BVES-AS1Q5T3Y7 98 aa11.4□□□□□ -0.59
USP4-201ENST00000265560 SCGB1D4Q6XE38 83 aa11.4□□□□□ -0.59
USP4-201ENST00000265560 PRKDCP78527 4128 aaKnown RBP11.39□□□□□ -0.59
USP4-201ENST00000265560 J3QQQ9 107 aa11.39□□□□□ -0.59
USP4-201ENST00000265560 RBX1P62877 108 aa11.39□□□□□ -0.59
USP4-201ENST00000265560 MRPL23Q16540 153 aaKnown RBP11.39□□□□□ -0.59
USP4-201ENST00000265560 KPRPQ5T749 579 aaPredicted RBP11.39□□□□□ -0.59
USP4-201ENST00000265560 TINCRA0A1B0GVN0 87 aa11.38□□□□□ -0.59
USP4-201ENST00000265560 IGHV3-30-3P0DP02 117 aa11.38□□□□□ -0.59
USP4-201ENST00000265560 GCSHP23434 173 aa11.38□□□□□ -0.59
USP4-201ENST00000265560 SPATA25Q9BR10 227 aa11.38□□□□□ -0.59
USP4-201ENST00000265560 ICOSQ9Y6W8 199 aa11.38□□□□□ -0.59
USP4-201ENST00000265560 DEFB131BA0A096LNP1 70 aa11.37□□□□□ -0.59
USP4-201ENST00000265560 DLEU1O43261 78 aa11.37□□□□□ -0.59
USP4-201ENST00000265560 CSDC2Q9Y534 153 aaKnown RBP11.37□□□□□ -0.59
USP4-201ENST00000265560 LGALS3P17931 250 aaKnown RBP11.37□□□□□ -0.59
USP4-201ENST00000265560 LYSTQ99698 3801 aa11.37□□□□□ -0.59
USP4-201ENST00000265560 IGLV10-54A0A075B6I4 117 aa11.36□□□□□ -0.59
USP4-201ENST00000265560 TM2D3Q9BRN9 247 aa11.36□□□□□ -0.59
USP4-201ENST00000265560 C11orf68Q9H3H3 251 aaKnown RBP11.35□□□□□ -0.59
USP4-201ENST00000265560 LINC00269Q8N2A0 174 aa11.35□□□□□ -0.59
USP4-201ENST00000265560 FXYD2P54710 66 aa11.34□□□□□ -0.59
USP4-201ENST00000265560 ZNF625Q96I27 306 aaPredicted RBP11.34□□□□□ -0.59
USP4-201ENST00000265560 HIST1H4GQ99525 98 aa11.34□□□□□ -0.59
USP4-201ENST00000265560 TGP01266 2768 aa11.34□□□□□ -0.59
USP4-201ENST00000265560 ANGP03950 147 aaKnown RBP11.34□□□□□ -0.59
USP4-201ENST00000265560 XCL1P47992 114 aa11.34□□□□□ -0.59
USP4-201ENST00000265560 C5orf38Q86SI9 138 aa11.33□□□□□ -0.6
USP4-201ENST00000265560 NAA38Q9BRA0 125 aaKnown RBP11.33□□□□□ -0.6
USP4-201ENST00000265560 LEPROTO15243 131 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms