RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 C2orf66Q6UXQ4 117 aa9.14□□□□□ -0.95
HIF3A-201ENST00000244302 BAALCQ8WXS3 180 aa9.13□□□□□ -0.95
HIF3A-201ENST00000244302 SLC25A29Q8N8R3 303 aa9.13□□□□□ -0.95
HIF3A-201ENST00000244302 IGHV3-38A0A0C4DH36 116 aa9.12□□□□□ -0.95
HIF3A-201ENST00000244302 TMEM238LA0A1B0GVL6 79 aa9.12□□□□□ -0.95
HIF3A-201ENST00000244302 A6NJY4 79 aa9.12□□□□□ -0.95
HIF3A-201ENST00000244302 J3QR89 54 aa9.12□□□□□ -0.95
HIF3A-201ENST00000244302 TRAV4A0A0B4J268 109 aa9.11□□□□□ -0.95
HIF3A-201ENST00000244302 MIFP14174 115 aa9.11□□□□□ -0.95
HIF3A-201ENST00000244302 FHL2Q14192 279 aa9.11□□□□□ -0.95
HIF3A-201ENST00000244302 PIK3CD-AS1Q5SR53 167 aa9.11□□□□□ -0.95
HIF3A-201ENST00000244302 CYSLTR1Q9Y271 337 aa9.11□□□□□ -0.95
HIF3A-201ENST00000244302 SDHAF1A6NFY7 115 aa9.11□□□□□ -0.95
HIF3A-201ENST00000244302 POLR2KP53803 58 aaKnown RBP9.11□□□□□ -0.95
HIF3A-201ENST00000244302 LINC00612Q8N6U2 182 aa9.11□□□□□ -0.95
HIF3A-201ENST00000244302 A0A0J9YWU9 116 aa9.1□□□□□ -0.95
HIF3A-201ENST00000244302 PRSS29PA6NIE9 313 aa9.1□□□□□ -0.95
HIF3A-201ENST00000244302 HERVK_113P61574 105 aa9.1□□□□□ -0.95
HIF3A-201ENST00000244302 TEX48A0A1B0GUV7 120 aa9.1□□□□□ -0.95
HIF3A-201ENST00000244302 RPL24P83731 157 aaKnown RBP9.1□□□□□ -0.95
HIF3A-201ENST00000244302 TMEM141Q96I45 108 aa9.1□□□□□ -0.95
HIF3A-201ENST00000244302 PRADC1Q9BSG0 188 aa9.1□□□□□ -0.95
HIF3A-201ENST00000244302 ZNRF2Q8NHG8 242 aa9.09□□□□□ -0.95
HIF3A-201ENST00000244302 TRGV4A0A0C4DH28 118 aa9.08□□□□□ -0.96
HIF3A-201ENST00000244302 GAGE12JA6NER3 117 aa9.08□□□□□ -0.96
HIF3A-201ENST00000244302 HTN3P15516 51 aa9.08□□□□□ -0.96
HIF3A-201ENST00000244302 GAGE4Q13068 117 aa9.08□□□□□ -0.96
HIF3A-201ENST00000244302 GAGE5Q13069 117 aa9.08□□□□□ -0.96
HIF3A-201ENST00000244302 GAGE13Q4V321 117 aa9.08□□□□□ -0.96
HIF3A-201ENST00000244302 ZFP2Q6ZN57 461 aa9.08□□□□□ -0.96
HIF3A-201ENST00000244302 TIMM17AQ99595 171 aa9.08□□□□□ -0.96
HIF3A-201ENST00000244302 A0A0J9YY99 117 aa9.08□□□□□ -0.96
HIF3A-201ENST00000244302 ZNF815PA8K554 130 aa9.08□□□□□ -0.96
HIF3A-201ENST00000244302 VCYO14598 125 aa9.08□□□□□ -0.96
HIF3A-201ENST00000244302 SPANXB1Q9NS25 103 aaPredicted RBP9.08□□□□□ -0.96
HIF3A-201ENST00000244302 TRBV6-5A0A0K0K1A5 114 aa9.07□□□□□ -0.96
HIF3A-201ENST00000244302 RHODO00212 210 aa9.07□□□□□ -0.96
HIF3A-201ENST00000244302 SCGB1A1P11684 91 aa9.07□□□□□ -0.96
HIF3A-201ENST00000244302 DAD1P61803 113 aa9.07□□□□□ -0.96
HIF3A-201ENST00000244302 PMVKQ15126 192 aa9.07□□□□□ -0.96
HIF3A-201ENST00000244302 KIR2DL4Q99706 377 aa9.07□□□□□ -0.96
HIF3A-201ENST00000244302 TM2D3Q9BRN9 247 aa9.07□□□□□ -0.96
HIF3A-201ENST00000244302 TP53TG1Q9Y2A0 90 aa9.07□□□□□ -0.96
HIF3A-201ENST00000244302 A0A096LPF7 62 aa9.07□□□□□ -0.96
HIF3A-201ENST00000244302 IGIPA6NJ69 53 aa9.07□□□□□ -0.96
HIF3A-201ENST00000244302 LYRM9A8MSI8 78 aa9.07□□□□□ -0.96
HIF3A-201ENST00000244302 SPART-AS1P0CW21 52 aa9.07□□□□□ -0.96
HIF3A-201ENST00000244302 KRTAP21-3Q3LHN1 58 aa9.07□□□□□ -0.96
HIF3A-201ENST00000244302 LYRM7Q5U5X0 104 aa9.07□□□□□ -0.96
HIF3A-201ENST00000244302 TNFRSF18Q9Y5U5 241 aa9.07□□□□□ -0.96
HIF3A-201ENST00000244302 LYSTQ99698 3801 aa9.06□□□□□ -0.96
HIF3A-201ENST00000244302 CSMD3Q7Z407 3707 aa9.06□□□□□ -0.96
HIF3A-201ENST00000244302 K7EQD1 137 aa9.06□□□□□ -0.96
HIF3A-201ENST00000244302 UBE2D1P51668 147 aa9.06□□□□□ -0.96
HIF3A-201ENST00000244302 NANOS2P60321 138 aaKnown RBP9.06□□□□□ -0.96
HIF3A-201ENST00000244302 TRBV27A0A0K0K1C4 114 aa9.05□□□□□ -0.96
HIF3A-201ENST00000244302 TSHBP01222 138 aa9.05□□□□□ -0.96
HIF3A-201ENST00000244302 RPL39P62891 51 aaKnown RBP9.05□□□□□ -0.96
HIF3A-201ENST00000244302 SCGB1D4Q6XE38 83 aa9.05□□□□□ -0.96
HIF3A-201ENST00000244302 IGLV4-69A0A075B6H9 119 aa9.05□□□□□ -0.96
HIF3A-201ENST00000244302 C11orf86A6NJI1 115 aa9.05□□□□□ -0.96
HIF3A-201ENST00000244302 H3BMG7 143 aa9.05□□□□□ -0.96
HIF3A-201ENST00000244302 WFDC2Q14508 124 aa9.05□□□□□ -0.96
HIF3A-201ENST00000244302 Q6ZTC4 211 aa9.05□□□□□ -0.96
HIF3A-201ENST00000244302 PRO0461Q9UI25 63 aa9.05□□□□□ -0.96
HIF3A-201ENST00000244302 TMEM238C9JI98 176 aa9.04□□□□□ -0.96
HIF3A-201ENST00000244302 F5H768 121 aa9.04□□□□□ -0.96
HIF3A-201ENST00000244302 RHOHQ15669 191 aa9.04□□□□□ -0.96
HIF3A-201ENST00000244302 VSIG2Q96IQ7 327 aa9.04□□□□□ -0.96
HIF3A-201ENST00000244302 EDA2RQ9HAV5 297 aa9.04□□□□□ -0.96
HIF3A-201ENST00000244302 FBN3Q75N90 2809 aa9.04□□□□□ -0.96
HIF3A-201ENST00000244302 SRSF9Q13242 221 aaKnown RBP eCLIP9.04□□□□□ -0.96
HIF3A-201ENST00000244302 ATP6V0E2Q8NHE4 81 aa9.04□□□□□ -0.96
HIF3A-201ENST00000244302 TGP01266 2768 aa9.03□□□□□ -0.96
HIF3A-201ENST00000244302 CRYBA4P53673 196 aa9.03□□□□□ -0.96
HIF3A-201ENST00000244302 NTM-AS1Q6ZSK4 140 aa9.03□□□□□ -0.96
HIF3A-201ENST00000244302 SPATA25Q9BR10 227 aa9.03□□□□□ -0.96
HIF3A-201ENST00000244302 PGPEP1Q9NXJ5 209 aa9.03□□□□□ -0.96
HIF3A-201ENST00000244302 TRAV26-1A0A087WT03 109 aa9.02□□□□□ -0.96
HIF3A-201ENST00000244302 I3L3M4 83 aa9.02□□□□□ -0.96
HIF3A-201ENST00000244302 GYPEP15421 78 aa9.02□□□□□ -0.96
HIF3A-201ENST00000244302 CEMP1Q6PRD7 247 aaPredicted RBP9.02□□□□□ -0.96
HIF3A-201ENST00000244302 SIGMAR1Q99720 223 aa9.02□□□□□ -0.96
HIF3A-201ENST00000244302 OPRPNQ99935 248 aaPredicted RBP9.02□□□□□ -0.96
HIF3A-201ENST00000244302 TRBV6-4A0A1B0GX49 114 aa9.02□□□□□ -0.97
HIF3A-201ENST00000244302 UBE2D3P61077 147 aa9.01□□□□□ -0.97
HIF3A-201ENST00000244302 UBE2D2P62837 147 aa9.01□□□□□ -0.97
HIF3A-201ENST00000244302 NFE4Q86UQ8 179 aa9.01□□□□□ -0.97
HIF3A-201ENST00000244302 PLEKHB2Q96CS7 222 aa9.01□□□□□ -0.97
HIF3A-201ENST00000244302 PLECQ15149 4684 aaKnown RBP9.01□□□□□ -0.97
HIF3A-201ENST00000244302 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.01□□□□□ -0.97
HIF3A-201ENST00000244302 IGKV2-29A2NJV5 120 aaPredicted RBP9.01□□□□□ -0.97
HIF3A-201ENST00000244302 GAGE12HA6NDE8 117 aa9.01□□□□□ -0.97
HIF3A-201ENST00000244302 ATP5G1P05496 136 aa9.01□□□□□ -0.97
HIF3A-201ENST00000244302 ETDBQ3ZM63 59 aa9.01□□□□□ -0.97
HIF3A-201ENST00000244302 TENM2Q9NT68 2774 aa9□□□□□ -0.97
HIF3A-201ENST00000244302 PAX4O43316 350 aa9□□□□□ -0.97
HIF3A-201ENST00000244302 RPL36AP83881 106 aaKnown RBP9□□□□□ -0.97
HIF3A-201ENST00000244302 RPL36ALQ969Q0 106 aaKnown RBP9□□□□□ -0.97
HIF3A-201ENST00000244302 CHCHD7Q9BUK0 85 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms