RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 GAGE4Q13068 117 aa15.95■□□□□ 0.14
CDX1-201ENST00000231656 GAGE5Q13069 117 aa15.95■□□□□ 0.14
CDX1-201ENST00000231656 FHL2Q14192 279 aa15.95■□□□□ 0.14
CDX1-201ENST00000231656 GAGE13Q4V321 117 aa15.95■□□□□ 0.14
CDX1-201ENST00000231656 MRAPQ8TCY5 172 aa15.95■□□□□ 0.14
CDX1-201ENST00000231656 ZNF25P17030 456 aaPredicted RBP15.95■□□□□ 0.14
CDX1-201ENST00000231656 HERVK_113P61574 105 aa15.95■□□□□ 0.14
CDX1-201ENST00000231656 MYMXA0A1B0GTQ4 84 aa15.94■□□□□ 0.14
CDX1-201ENST00000231656 SEC11AP67812 179 aa15.94■□□□□ 0.14
CDX1-201ENST00000231656 TMEM170BQ5T4T1 132 aa15.94■□□□□ 0.14
CDX1-201ENST00000231656 ORAOV1Q8WV07 137 aa15.94■□□□□ 0.14
CDX1-201ENST00000231656 TRGV4A0A0C4DH28 118 aa15.93■□□□□ 0.14
CDX1-201ENST00000231656 FAM222AQ5U5X8 452 aa15.93■□□□□ 0.14
CDX1-201ENST00000231656 NTM-AS1Q6ZSK4 140 aa15.93■□□□□ 0.14
CDX1-201ENST00000231656 A0A0J9YXV3 536 aa15.92■□□□□ 0.14
CDX1-201ENST00000231656 Q6ZVH6 145 aa15.92■□□□□ 0.14
CDX1-201ENST00000231656 TIMM21Q9BVV7 248 aa15.92■□□□□ 0.14
CDX1-201ENST00000231656 LYRM9A8MSI8 78 aa15.92■□□□□ 0.14
CDX1-201ENST00000231656 Q6ZUT4 128 aa15.92■□□□□ 0.14
CDX1-201ENST00000231656 TM2D3Q9BRN9 247 aa15.92■□□□□ 0.14
CDX1-201ENST00000231656 COX11Q9Y6N1 276 aa15.92■□□□□ 0.14
CDX1-201ENST00000231656 LOC100131303A0A0U1RQF7 123 aa15.91■□□□□ 0.14
CDX1-201ENST00000231656 TAX1BP3O14907 124 aa15.91■□□□□ 0.14
CDX1-201ENST00000231656 DEFB130BP0DP73 79 aa15.91■□□□□ 0.14
CDX1-201ENST00000231656 DEFB130AP0DP74 79 aa15.91■□□□□ 0.14
CDX1-201ENST00000231656 ZNF22P17026 224 aaPredicted RBP15.91■□□□□ 0.14
CDX1-201ENST00000231656 MRPS36P82909 103 aaKnown RBP15.9■□□□□ 0.14
CDX1-201ENST00000231656 RNASE13Q5GAN3 156 aaKnown RBP15.9■□□□□ 0.14
CDX1-201ENST00000231656 SPATA25Q9BR10 227 aa15.9■□□□□ 0.14
CDX1-201ENST00000231656 TMEM223A0PJW6 202 aa15.9■□□□□ 0.14
CDX1-201ENST00000231656 GTSF1LQ9H1H1 148 aa15.89■□□□□ 0.13
CDX1-201ENST00000231656 CELA1Q9UNI1 258 aa15.89■□□□□ 0.13
CDX1-201ENST00000231656 LINC00694P0DN24 101 aa15.88■□□□□ 0.13
CDX1-201ENST00000231656 TSPEAR-AS2P59090 65 aa15.88■□□□□ 0.13
CDX1-201ENST00000231656 HUWE1Q7Z6Z7 4374 aaKnown RBP15.88■□□□□ 0.13
CDX1-201ENST00000231656 ZNF815PA8K554 130 aa15.87■□□□□ 0.13
CDX1-201ENST00000231656 SPART-AS1P0CW21 52 aa15.86■□□□□ 0.13
CDX1-201ENST00000231656 TAL2Q16559 108 aa15.86■□□□□ 0.13
CDX1-201ENST00000231656 A6NDN8 102 aa15.85■□□□□ 0.13
CDX1-201ENST00000231656 TM2D2Q9BX73 214 aa15.85■□□□□ 0.13
CDX1-201ENST00000231656 C11orf68Q9H3H3 251 aaKnown RBP15.85■□□□□ 0.13
CDX1-201ENST00000231656 TINCRA0A1B0GVN0 87 aa15.85■□□□□ 0.13
CDX1-201ENST00000231656 GCSHP23434 173 aa15.85■□□□□ 0.13
CDX1-201ENST00000231656 CSDC2Q9Y534 153 aaKnown RBP15.85■□□□□ 0.13
CDX1-201ENST00000231656 LEPROTO15243 131 aa15.84■□□□□ 0.13
CDX1-201ENST00000231656 FXYD2P54710 66 aa15.84■□□□□ 0.13
CDX1-201ENST00000231656 DAD1P61803 113 aa15.84■□□□□ 0.13
CDX1-201ENST00000231656 DGAT2L7PQ6IED9 249 aa15.84■□□□□ 0.13
CDX1-201ENST00000231656 CEND1Q8N111 149 aa15.84■□□□□ 0.13
CDX1-201ENST00000231656 PLEKHB2Q96CS7 222 aa15.84■□□□□ 0.13
CDX1-201ENST00000231656 MEGF8Q7Z7M0 2845 aa15.84■□□□□ 0.13
CDX1-201ENST00000231656 DNAH9Q9NYC9 4486 aa15.84■□□□□ 0.13
CDX1-201ENST00000231656 J3QQQ9 107 aa15.83■□□□□ 0.12
CDX1-201ENST00000231656 UBE2D1P51668 147 aa15.83■□□□□ 0.12
CDX1-201ENST00000231656 LINC00469Q8N7U9 141 aa15.82■□□□□ 0.12
CDX1-201ENST00000231656 B9D2Q9BPU9 175 aa15.82■□□□□ 0.12
CDX1-201ENST00000231656 TMEM243Q9BU79 118 aa15.82■□□□□ 0.12
CDX1-201ENST00000231656 TEX48A0A1B0GUV7 120 aa15.82■□□□□ 0.12
CDX1-201ENST00000231656 K7EP13 123 aa15.82■□□□□ 0.12
CDX1-201ENST00000231656 COL7A1Q02388 2944 aa15.81■□□□□ 0.12
CDX1-201ENST00000231656 A0A0J9YWU9 116 aa15.81■□□□□ 0.12
CDX1-201ENST00000231656 H3BRM9 83 aa15.8■□□□□ 0.12
CDX1-201ENST00000231656 PRKDCP78527 4128 aaKnown RBP15.8■□□□□ 0.12
CDX1-201ENST00000231656 LGALS3P17931 250 aaKnown RBP15.8■□□□□ 0.12
CDX1-201ENST00000231656 SMAGPQ0VAQ4 97 aa15.8■□□□□ 0.12
CDX1-201ENST00000231656 HIST1H4GQ99525 98 aa15.8■□□□□ 0.12
CDX1-201ENST00000231656 H7C423 109 aa15.79■□□□□ 0.12
CDX1-201ENST00000231656 SCGB1D4Q6XE38 83 aa15.79■□□□□ 0.12
CDX1-201ENST00000231656 IGHV3-64A0A075B6Q5 118 aa15.77■□□□□ 0.12
CDX1-201ENST00000231656 A0A0J9YY99 117 aa15.77■□□□□ 0.12
CDX1-201ENST00000231656 TIRAPP58753 221 aa15.77■□□□□ 0.12
CDX1-201ENST00000231656 CDC42SE2Q9NRR3 84 aa15.77■□□□□ 0.12
CDX1-201ENST00000231656 IGLV5-45A0A087WSX0 123 aa15.77■□□□□ 0.11
CDX1-201ENST00000231656 TRBV6-8A0A0A6YYG3 113 aa15.77■□□□□ 0.11
CDX1-201ENST00000231656 UBE2L6O14933 153 aa15.77■□□□□ 0.11
CDX1-201ENST00000231656 C12orf74Q32Q52 190 aa15.77■□□□□ 0.11
CDX1-201ENST00000231656 FAM19A3Q7Z5A8 133 aa15.77■□□□□ 0.11
CDX1-201ENST00000231656 OR5A1Q8NGJ0 315 aa15.77■□□□□ 0.11
CDX1-201ENST00000231656 PRO0255Q9UI72 69 aa15.77■□□□□ 0.11
CDX1-201ENST00000231656 ATP5G1P05496 136 aa15.76■□□□□ 0.11
CDX1-201ENST00000231656 GYPEP15421 78 aa15.76■□□□□ 0.11
CDX1-201ENST00000231656 PTTG1IPP53801 180 aa15.76■□□□□ 0.11
CDX1-201ENST00000231656 GEMIN7Q9H840 131 aaKnown RBP15.76■□□□□ 0.11
CDX1-201ENST00000231656 IGHV3-30-3P0DP02 117 aa15.75■□□□□ 0.11
CDX1-201ENST00000231656 IGHV1-58A0A0C4DH39 117 aa15.75■□□□□ 0.11
CDX1-201ENST00000231656 AMMECR1LQ6DCA0 310 aa15.75■□□□□ 0.11
CDX1-201ENST00000231656 TRAV8-3A0A0A6YYJ7 113 aa15.74■□□□□ 0.11
CDX1-201ENST00000231656 C9orf118A6NHY6 69 aa15.74■□□□□ 0.11
CDX1-201ENST00000231656 SMIM13P0DJ93 91 aa15.74■□□□□ 0.11
CDX1-201ENST00000231656 LINC00242Q5T6M2 205 aa15.73■□□□□ 0.11
CDX1-201ENST00000231656 VSIG2Q96IQ7 327 aa15.73■□□□□ 0.11
CDX1-201ENST00000231656 COX6A2Q02221 97 aa15.72■□□□□ 0.11
CDX1-201ENST00000231656 ATP6V0E2Q8NHE4 81 aa15.72■□□□□ 0.11
CDX1-201ENST00000231656 TMEM101Q96IK0 257 aa15.72■□□□□ 0.11
CDX1-201ENST00000231656 SPANXB1Q9NS25 103 aaPredicted RBP15.72■□□□□ 0.11
CDX1-201ENST00000231656 CDKN2A-AS1Q9UH64 79 aa15.72■□□□□ 0.11
CDX1-201ENST00000231656 SPINK8P0C7L1 97 aa15.72■□□□□ 0.11
CDX1-201ENST00000231656 GAGE6Q13070 117 aa15.72■□□□□ 0.11
CDX1-201ENST00000231656 C11orf45Q8TAV5 145 aa15.72■□□□□ 0.11
CDX1-201ENST00000231656 NHP2Q9NX24 153 aaKnown RBP15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 130 ms