RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 A8MZ25 164 aa10.56□□□□□ -0.72
CCDC47-201ENST00000225726 FHL2Q14192 279 aa10.56□□□□□ -0.72
CCDC47-201ENST00000225726 PMVKQ15126 192 aa10.56□□□□□ -0.72
CCDC47-201ENST00000225726 MT-ATP8P03928 68 aa10.56□□□□□ -0.72
CCDC47-201ENST00000225726 MIFP14174 115 aa10.56□□□□□ -0.72
CCDC47-201ENST00000225726 DAZ4Q86SG3 579 aaKnown RBP10.56□□□□□ -0.72
CCDC47-201ENST00000225726 DAZ3Q9NR90 486 aaKnown RBP10.56□□□□□ -0.72
CCDC47-201ENST00000225726 DEFB130BP0DP73 79 aa10.55□□□□□ -0.72
CCDC47-201ENST00000225726 DEFB130AP0DP74 79 aa10.55□□□□□ -0.72
CCDC47-201ENST00000225726 UBE2D3P61077 147 aa10.55□□□□□ -0.72
CCDC47-201ENST00000225726 UBE2D2P62837 147 aa10.55□□□□□ -0.72
CCDC47-201ENST00000225726 SAMD5Q5TGI4 173 aa10.55□□□□□ -0.72
CCDC47-201ENST00000225726 PYGO1Q9Y3Y4 419 aa10.55□□□□□ -0.72
CCDC47-201ENST00000225726 IGHV4-28A0A0C4DH34 117 aa10.55□□□□□ -0.72
CCDC47-201ENST00000225726 COX8AP10176 69 aa10.55□□□□□ -0.72
CCDC47-201ENST00000225726 NHP2Q9NX24 153 aaKnown RBP10.55□□□□□ -0.72
CCDC47-201ENST00000225726 A0A1B0GWB2 263 aa10.54□□□□□ -0.72
CCDC47-201ENST00000225726 C9orf118A6NHY6 69 aa10.54□□□□□ -0.72
CCDC47-201ENST00000225726 A6NDN8 102 aa10.54□□□□□ -0.72
CCDC47-201ENST00000225726 GAGE12JA6NER3 117 aa10.54□□□□□ -0.72
CCDC47-201ENST00000225726 GAGE4Q13068 117 aa10.54□□□□□ -0.72
CCDC47-201ENST00000225726 GAGE5Q13069 117 aa10.54□□□□□ -0.72
CCDC47-201ENST00000225726 GAGE13Q4V321 117 aa10.54□□□□□ -0.72
CCDC47-201ENST00000225726 FAM222AQ5U5X8 452 aa10.54□□□□□ -0.72
CCDC47-201ENST00000225726 Q8NAQ8 132 aa10.53□□□□□ -0.72
CCDC47-201ENST00000225726 PRADC1Q9BSG0 188 aa10.53□□□□□ -0.72
CCDC47-201ENST00000225726 J3QR89 54 aa10.53□□□□□ -0.72
CCDC47-201ENST00000225726 PAPPA-AS1Q5QFB9 102 aa10.53□□□□□ -0.72
CCDC47-201ENST00000225726 ZC2HC1BQ5TFG8 222 aa10.53□□□□□ -0.72
CCDC47-201ENST00000225726 SPANXA1Q9NS26 97 aa10.53□□□□□ -0.72
CCDC47-201ENST00000225726 IGLV4-3A0A075B6K6 122 aa10.52□□□□□ -0.72
CCDC47-201ENST00000225726 A0A1W2PPM0 123 aa10.52□□□□□ -0.73
CCDC47-201ENST00000225726 PCP2Q8IVA1 136 aa10.52□□□□□ -0.73
CCDC47-201ENST00000225726 OPRPNQ99935 248 aaPredicted RBP10.52□□□□□ -0.73
CCDC47-201ENST00000225726 CMYA5Q8N3K9 4069 aa10.51□□□□□ -0.73
CCDC47-201ENST00000225726 IGLV4-69A0A075B6H9 119 aa10.51□□□□□ -0.73
CCDC47-201ENST00000225726 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.51□□□□□ -0.73
CCDC47-201ENST00000225726 IGKV2-29A2NJV5 120 aaPredicted RBP10.51□□□□□ -0.73
CCDC47-201ENST00000225726 UBE2D4Q9Y2X8 147 aa10.51□□□□□ -0.73
CCDC47-201ENST00000225726 LOC100131303A0A0U1RQF7 123 aa10.5□□□□□ -0.73
CCDC47-201ENST00000225726 FGF6P10767 208 aa10.5□□□□□ -0.73
CCDC47-201ENST00000225726 SRSF9Q13242 221 aaKnown RBP eCLIP10.5□□□□□ -0.73
CCDC47-201ENST00000225726 DEFB4AO15263 64 aa10.5□□□□□ -0.73
CCDC47-201ENST00000225726 LINC00694P0DN24 101 aa10.5□□□□□ -0.73
CCDC47-201ENST00000225726 VCX2Q9H322 139 aa10.5□□□□□ -0.73
CCDC47-201ENST00000225726 TIMM21Q9BVV7 248 aa10.49□□□□□ -0.73
CCDC47-201ENST00000225726 FAM104AQ969W3 186 aa10.49□□□□□ -0.73
CCDC47-201ENST00000225726 AMELXQ99217 191 aa10.49□□□□□ -0.73
CCDC47-201ENST00000225726 MRPL23Q16540 153 aaKnown RBP10.49□□□□□ -0.73
CCDC47-201ENST00000225726 NTM-AS1Q6ZSK4 140 aa10.49□□□□□ -0.73
CCDC47-201ENST00000225726 STAB1Q9NY15 2570 aa10.48□□□□□ -0.73
CCDC47-201ENST00000225726 DAD1P61803 113 aa10.48□□□□□ -0.73
CCDC47-201ENST00000225726 C2orf91Q6ZV80 131 aa10.48□□□□□ -0.73
CCDC47-201ENST00000225726 IGKV2D-26A0A0A0MRZ7 120 aa10.48□□□□□ -0.73
CCDC47-201ENST00000225726 C11orf86A6NJI1 115 aa10.48□□□□□ -0.73
CCDC47-201ENST00000225726 CEMP1Q6PRD7 247 aaPredicted RBP10.48□□□□□ -0.73
CCDC47-201ENST00000225726 SBSPONQ8IVN8 264 aa10.48□□□□□ -0.73
CCDC47-201ENST00000225726 SPART-AS1P0CW21 52 aa10.47□□□□□ -0.73
CCDC47-201ENST00000225726 NFE4Q86UQ8 179 aa10.47□□□□□ -0.73
CCDC47-201ENST00000225726 PRO0255Q9UI72 69 aa10.47□□□□□ -0.73
CCDC47-201ENST00000225726 MRPS36P82909 103 aaKnown RBP10.47□□□□□ -0.73
CCDC47-201ENST00000225726 CELA1Q9UNI1 258 aa10.47□□□□□ -0.73
CCDC47-201ENST00000225726 FXYD2P54710 66 aa10.46□□□□□ -0.73
CCDC47-201ENST00000225726 APOMO95445 188 aa10.46□□□□□ -0.74
CCDC47-201ENST00000225726 PGPEP1Q9NXJ5 209 aa10.46□□□□□ -0.74
CCDC47-201ENST00000225726 TMEM243Q9BU79 118 aa10.45□□□□□ -0.74
CCDC47-201ENST00000225726 SMIM13P0DJ93 91 aa10.45□□□□□ -0.74
CCDC47-201ENST00000225726 Q6ZUT4 128 aa10.45□□□□□ -0.74
CCDC47-201ENST00000225726 MAST4O15021 2626 aa10.45□□□□□ -0.74
CCDC47-201ENST00000225726 E9PLD3 99 aa10.45□□□□□ -0.74
CCDC47-201ENST00000225726 GYPEP15421 78 aa10.45□□□□□ -0.74
CCDC47-201ENST00000225726 CHAC1Q9BUX1 264 aa10.45□□□□□ -0.74
CCDC47-201ENST00000225726 TRBV25-1A0A075B6N4 114 aa10.44□□□□□ -0.74
CCDC47-201ENST00000225726 H3BRM9 83 aa10.44□□□□□ -0.74
CCDC47-201ENST00000225726 HERVK_113P61574 105 aa10.44□□□□□ -0.74
CCDC47-201ENST00000225726 CSDC2Q9Y534 153 aaKnown RBP10.44□□□□□ -0.74
CCDC47-201ENST00000225726 CCDC179H3BU77 68 aa10.44□□□□□ -0.74
CCDC47-201ENST00000225726 H7C423 109 aa10.44□□□□□ -0.74
CCDC47-201ENST00000225726 ATP5G1P05496 136 aa10.44□□□□□ -0.74
CCDC47-201ENST00000225726 SEC11AP67812 179 aa10.44□□□□□ -0.74
CCDC47-201ENST00000225726 DGAT2L7PQ6IED9 249 aa10.44□□□□□ -0.74
CCDC47-201ENST00000225726 LOC107984156A0A0G2JMH3 177 aa10.43□□□□□ -0.74
CCDC47-201ENST00000225726 M0QXV9 152 aa10.43□□□□□ -0.74
CCDC47-201ENST00000225726 ARL17AQ8IVW1 177 aa10.43□□□□□ -0.74
CCDC47-201ENST00000225726 RETNQ9HD89 108 aa10.43□□□□□ -0.74
CCDC47-201ENST00000225726 DNAH3Q8TD57 4116 aa10.43□□□□□ -0.74
CCDC47-201ENST00000225726 PAX4O43316 350 aa10.43□□□□□ -0.74
CCDC47-201ENST00000225726 OR5A1Q8NGJ0 315 aa10.43□□□□□ -0.74
CCDC47-201ENST00000225726 UBE2L6O14933 153 aa10.43□□□□□ -0.74
CCDC47-201ENST00000225726 XGP55808 180 aa10.43□□□□□ -0.74
CCDC47-201ENST00000225726 RNASE13Q5GAN3 156 aaKnown RBP10.43□□□□□ -0.74
CCDC47-201ENST00000225726 TMEM170BQ5T4T1 132 aa10.43□□□□□ -0.74
CCDC47-201ENST00000225726 SPANXB1Q9NS25 103 aaPredicted RBP10.43□□□□□ -0.74
CCDC47-201ENST00000225726 A0A0J9YXV3 536 aa10.42□□□□□ -0.74
CCDC47-201ENST00000225726 GAGE6Q13070 117 aa10.42□□□□□ -0.74
CCDC47-201ENST00000225726 TRBV6-8A0A0A6YYG3 113 aa10.42□□□□□ -0.74
CCDC47-201ENST00000225726 ATP6V0E2Q8NHE4 81 aa10.42□□□□□ -0.74
CCDC47-201ENST00000225726 PPDPFQ9H3Y8 114 aa10.42□□□□□ -0.74
CCDC47-201ENST00000225726 ANK2Q01484 3957 aa10.42□□□□□ -0.74
CCDC47-201ENST00000225726 ZNF22P17026 224 aaPredicted RBP10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 180.6 ms