RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 LINC00694P0DN24 101 aa10.13□□□□□ -0.79
USH1C-201ENST00000005226 NDUFV3P56181 108 aaKnown RBP10.13□□□□□ -0.79
USH1C-201ENST00000005226 ZNF415Q09FC8 603 aa10.13□□□□□ -0.79
USH1C-201ENST00000005226 CITED2Q99967 270 aaPredicted RBP10.13□□□□□ -0.79
USH1C-201ENST00000005226 SPANXA1Q9NS26 97 aa10.13□□□□□ -0.79
USH1C-201ENST00000005226 XCL2Q9UBD3 114 aa10.13□□□□□ -0.79
USH1C-201ENST00000005226 ZFYVE26Q68DK2 2539 aa10.12□□□□□ -0.79
USH1C-201ENST00000005226 IGHV3-53P01767 116 aa10.12□□□□□ -0.79
USH1C-201ENST00000005226 LINC01356Q8N9X3 169 aa10.12□□□□□ -0.79
USH1C-201ENST00000005226 C11orf72Q8NBR9 251 aa10.12□□□□□ -0.79
USH1C-201ENST00000005226 NF1P21359 2839 aa10.12□□□□□ -0.79
USH1C-201ENST00000005226 SONP18583 2426 aaKnown RBP10.12□□□□□ -0.79
USH1C-201ENST00000005226 CCDC179H3BU77 68 aa10.12□□□□□ -0.79
USH1C-201ENST00000005226 RNF152Q8N8N0 203 aa10.12□□□□□ -0.79
USH1C-201ENST00000005226 Q9H8V8 135 aa10.12□□□□□ -0.79
USH1C-201ENST00000005226 VPREB3Q9UKI3 123 aa10.12□□□□□ -0.79
USH1C-201ENST00000005226 JMJD1CQ15652 2540 aa10.11□□□□□ -0.79
USH1C-201ENST00000005226 PIEZO1Q92508 2521 aa10.11□□□□□ -0.79
USH1C-201ENST00000005226 LST1O00453 97 aa10.11□□□□□ -0.79
USH1C-201ENST00000005226 MAP6D1Q9H9H5 199 aa10.11□□□□□ -0.79
USH1C-201ENST00000005226 EDA2RQ9HAV5 297 aa10.11□□□□□ -0.79
USH1C-201ENST00000005226 LRRK2Q5S007 2527 aa10.1□□□□□ -0.79
USH1C-201ENST00000005226 TRAV13-1A0A0B4J241 112 aa10.1□□□□□ -0.79
USH1C-201ENST00000005226 GAGE5Q13069 117 aa10.1□□□□□ -0.79
USH1C-201ENST00000005226 GAGE6Q13070 117 aa10.1□□□□□ -0.79
USH1C-201ENST00000005226 Q8N2B8 174 aa10.1□□□□□ -0.79
USH1C-201ENST00000005226 LINC00242Q5T6M2 205 aa10.09□□□□□ -0.79
USH1C-201ENST00000005226 SOSTDC1Q6X4U4 206 aa10.09□□□□□ -0.79
USH1C-201ENST00000005226 LINC00308Q8TCZ7 52 aa10.09□□□□□ -0.79
USH1C-201ENST00000005226 IFITM1P13164 125 aa10.08□□□□□ -0.8
USH1C-201ENST00000005226 C11orf44Q8N8P7 122 aa10.08□□□□□ -0.8
USH1C-201ENST00000005226 YAE1D1Q9NRH1 226 aa10.08□□□□□ -0.8
USH1C-201ENST00000005226 NAV2Q8IVL1 2488 aa10.08□□□□□ -0.8
USH1C-201ENST00000005226 TRGV1A0A0A0MS02 117 aa10.07□□□□□ -0.8
USH1C-201ENST00000005226 NDUFA1O15239 70 aa10.07□□□□□ -0.8
USH1C-201ENST00000005226 Q6YL49 198 aa10.07□□□□□ -0.8
USH1C-201ENST00000005226 DYNLRB2Q8TF09 96 aa10.07□□□□□ -0.8
USH1C-201ENST00000005226 H3BT86 120 aa10.06□□□□□ -0.8
USH1C-201ENST00000005226 LINC01600Q96MT4 127 aa10.06□□□□□ -0.8
USH1C-201ENST00000005226 AKAP9Q99996 3911 aa10.06□□□□□ -0.8
USH1C-201ENST00000005226 A0A096LNT2 108 aa10.06□□□□□ -0.8
USH1C-201ENST00000005226 RS1O15537 224 aa10.06□□□□□ -0.8
USH1C-201ENST00000005226 A8MTW9 85 aa10.06□□□□□ -0.8
USH1C-201ENST00000005226 TIRAPP58753 221 aa10.06□□□□□ -0.8
USH1C-201ENST00000005226 NTM-AS1Q6ZSK4 140 aa10.06□□□□□ -0.8
USH1C-201ENST00000005226 CIRBPQ14011 172 aaKnown RBP10.05□□□□□ -0.8
USH1C-201ENST00000005226 INSP01308 110 aa10.05□□□□□ -0.8
USH1C-201ENST00000005226 BEAN1Q3B7T3 259 aa10.05□□□□□ -0.8
USH1C-201ENST00000005226 MEIG1Q5JSS6 88 aa10.05□□□□□ -0.8
USH1C-201ENST00000005226 PIK3CD-AS1Q5SR53 167 aa10.05□□□□□ -0.8
USH1C-201ENST00000005226 IGLV5-45A0A087WSX0 123 aa10.04□□□□□ -0.8
USH1C-201ENST00000005226 GAGE12JA6NER3 117 aa10.04□□□□□ -0.8
USH1C-201ENST00000005226 TIMM17BO60830 172 aa10.04□□□□□ -0.8
USH1C-201ENST00000005226 GAGE4Q13068 117 aa10.04□□□□□ -0.8
USH1C-201ENST00000005226 DEFB114Q30KQ6 69 aa10.04□□□□□ -0.8
USH1C-201ENST00000005226 Q6ZTI0 123 aa10.04□□□□□ -0.8
USH1C-201ENST00000005226 C3orf56Q8N813 242 aa10.04□□□□□ -0.8
USH1C-201ENST00000005226 DNAJC30Q96LL9 226 aa10.04□□□□□ -0.8
USH1C-201ENST00000005226 A0A1W2PRX2 142 aa10.04□□□□□ -0.8
USH1C-201ENST00000005226 SMIM1B2RUZ4 78 aa10.04□□□□□ -0.8
USH1C-201ENST00000005226 GAGE7O76087 117 aa10.04□□□□□ -0.8
USH1C-201ENST00000005226 GAGE12FP0CL80 117 aa10.04□□□□□ -0.8
USH1C-201ENST00000005226 GAGE12GP0CL81 117 aa10.04□□□□□ -0.8
USH1C-201ENST00000005226 GAGE12IP0CL82 117 aa10.04□□□□□ -0.8
USH1C-201ENST00000005226 PRIMA1Q86XR5 153 aa10.04□□□□□ -0.8
USH1C-201ENST00000005226 C1orf158Q8N1D5 194 aa10.03□□□□□ -0.8
USH1C-201ENST00000005226 CHCHD5Q9BSY4 110 aa10.03□□□□□ -0.8
USH1C-201ENST00000005226 IGLV5-39A0A0G2JS06 123 aa10.03□□□□□ -0.8
USH1C-201ENST00000005226 IGKV3OR2-268A0A0C4DH90 116 aa10.02□□□□□ -0.81
USH1C-201ENST00000005226 SETXQ7Z333 2677 aaKnown RBP10.02□□□□□ -0.81
USH1C-201ENST00000005226 ZNF462Q96JM2 2506 aa10.02□□□□□ -0.81
USH1C-201ENST00000005226 HERVK_113P63121 156 aa10.02□□□□□ -0.81
USH1C-201ENST00000005226 ODF3L2Q3SX64 289 aa10.02□□□□□ -0.81
USH1C-201ENST00000005226 Q96MF0 132 aa10.02□□□□□ -0.81
USH1C-201ENST00000005226 PEMTQ9UBM1 199 aa10.02□□□□□ -0.81
USH1C-201ENST00000005226 PLA2G2AP14555 144 aa10.01□□□□□ -0.81
USH1C-201ENST00000005226 DSCR9P59020 149 aa10.01□□□□□ -0.81
USH1C-201ENST00000005226 KRTAP10-9P60411 292 aa10.01□□□□□ -0.81
USH1C-201ENST00000005226 FAM218AQ96MZ4 157 aa10.01□□□□□ -0.81
USH1C-201ENST00000005226 IGHV4-31P0DP07 118 aa10□□□□□ -0.81
USH1C-201ENST00000005226 CCDC168Q8NDH2 2452 aa10□□□□□ -0.81
USH1C-201ENST00000005226 ZNF469Q96JG9 3925 aaPredicted RBP10□□□□□ -0.81
USH1C-201ENST00000005226 LOC100131303A0A0U1RQF7 123 aa10□□□□□ -0.81
USH1C-201ENST00000005226 COX7A2LO14548 114 aa10□□□□□ -0.81
USH1C-201ENST00000005226 Q6Q795 121 aa10□□□□□ -0.81
USH1C-201ENST00000005226 J3QLI3 93 aa9.99□□□□□ -0.81
USH1C-201ENST00000005226 DEFB121Q5J5C9 76 aa9.99□□□□□ -0.81
USH1C-201ENST00000005226 STHQ8IWL8 128 aa9.99□□□□□ -0.81
USH1C-201ENST00000005226 Q9HAA7 133 aa9.99□□□□□ -0.81
USH1C-201ENST00000005226 RPL36AP83881 106 aaKnown RBP9.98□□□□□ -0.81
USH1C-201ENST00000005226 SMCR5Q8TEV8 140 aa9.98□□□□□ -0.81
USH1C-201ENST00000005226 RPL36ALQ969Q0 106 aaKnown RBP9.98□□□□□ -0.81
USH1C-201ENST00000005226 NOP10Q9NPE3 64 aaKnown RBP9.98□□□□□ -0.81
USH1C-201ENST00000005226 F5H768 121 aa9.98□□□□□ -0.81
USH1C-201ENST00000005226 FSHBP01225 129 aa9.98□□□□□ -0.81
USH1C-201ENST00000005226 DAZ2Q13117 558 aaKnown RBP9.98□□□□□ -0.81
USH1C-201ENST00000005226 SHISA2Q6UWI4 295 aa9.98□□□□□ -0.81
USH1C-201ENST00000005226 DAZ4Q86SG3 579 aaKnown RBP9.98□□□□□ -0.81
USH1C-201ENST00000005226 DAZ3Q9NR90 486 aaKnown RBP9.98□□□□□ -0.81
USH1C-201ENST00000005226 CDC42SE2Q9NRR3 84 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms