RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 GRAPQ13588 217 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 RTN1Q16799 776 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 MCTP2Q6DN12 878 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 REM2Q8IYK8 340 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-218ENST00000640036 GRAPLQ8TC17 118 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-218ENST00000640036 ZSCAN31Q96LW9 406 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-218ENST00000640036 RTL9Q8NET4 1388 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 GOLGA6L10A6NI86 522 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 RPS12P25398 132 aaKnown RBP5.69□□□□□ -1.5
SCN1A-218ENST00000640036 CHRNA5P30532 468 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 GBP2P32456 591 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-218ENST00000640036 ACTN2P35609 894 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 METAP2P50579 478 aaKnown RBP eCLIP5.69□□□□□ -1.5
SCN1A-218ENST00000640036 HAND2P61296 217 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 TAF3Q5VWG9 929 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 MAPKAPK5Q8IW41 473 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 SECISBP2LQ93073 1101 aaKnown RBP5.69□□□□□ -1.5
SCN1A-218ENST00000640036 CDHR1Q96JP9 859 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 FNBP1Q96RU3 617 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 ZHX2Q9Y6X8 837 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 SLU7O95391 586 aaKnown RBP5.69□□□□□ -1.5
SCN1A-218ENST00000640036 MYL3P08590 195 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 SSTR3P32745 418 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-218ENST00000640036 CEBPZQ03701 1054 aaKnown RBP5.69□□□□□ -1.5
SCN1A-218ENST00000640036 NONOQ15233 471 aaKnown RBP eCLIP5.69□□□□□ -1.5
SCN1A-218ENST00000640036 NBPF20Q3BBV1 942 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 ZBTB8OSQ8IWT0 167 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 GANCQ8TET4 914 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 ZBTB1Q9Y2K1 713 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 TARBP1Q13395 1621 aaKnown RBP5.69□□□□□ -1.5
SCN1A-218ENST00000640036 EIF2AK4Q9P2K8 1649 aaKnown RBP5.69□□□□□ -1.5
SCN1A-218ENST00000640036 CRB1P82279 1406 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 MANSC4A6NHS7 340 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-218ENST00000640036 ICA1Q05084 483 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 CFAP100Q494V2 611 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 RC3H1Q5TC82 1133 aaKnown RBP5.69□□□□□ -1.5
SCN1A-218ENST00000640036 ZNF397Q8NF99 534 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-218ENST00000640036 ARHGEF1Q92888 912 aaKnown RBP5.69□□□□□ -1.5
SCN1A-218ENST00000640036 CCPG1Q9ULG6 757 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 ERVK-7P63135 1459 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 CCL15-CCL14A0A0B4J2E2 113 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 ERVV-1B6SEH8 477 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 ZBTB43O43298 467 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 EVI5O60447 810 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 RAG1P15918 1043 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 CCL15Q16663 113 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 IQCEQ6IPM2 695 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 RBM46Q8TBY0 533 aaKnown RBP5.69□□□□□ -1.5
SCN1A-218ENST00000640036 PI4KBQ9UBF8 816 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 CCDC172P0C7W6 258 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 RARBP10826 455 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 HARSP12081 509 aaKnown RBP5.69□□□□□ -1.5
SCN1A-218ENST00000640036 MX1P20591 662 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 INHBEP58166 350 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 CBX1P83916 185 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 NUDT12Q9BQG2 462 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 PTPRTO14522 1441 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 EYA2O00167 538 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 INF2Q27J81 1249 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 USH1GQ495M9 461 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 ANKRD13AQ8IZ07 590 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 GLT1D1Q96MS3 346 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 PDRG1Q9NUG6 133 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 SWAP70Q9UH65 585 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 ZBED9Q6R2W3 1325 aa5.69□□□□□ -1.5
SCN1A-218ENST00000640036 PZPP20742 1482 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 FCER1AP12319 257 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 TRPC3Q13507 836 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 DGKZQ13574 1117 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 GCKRQ14397 625 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 GSDMBQ8TAX9 411 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 NSMCE1Q8WV22 266 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 AAASQ9NRG9 546 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 NOP58Q9Y2X3 529 aaKnown RBP5.68□□□□□ -1.5
SCN1A-218ENST00000640036 RALGAPBQ86X10 1494 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 BMP15O95972 392 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 UBE4AQ14139 1066 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 LARP1BQ659C4 914 aaKnown RBP5.68□□□□□ -1.5
SCN1A-218ENST00000640036 CCDC91Q7Z6B0 441 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 NRBP2Q9NSY0 501 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 PAG1Q9NWQ8 432 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 MAP3K4Q9Y6R4 1608 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 DISP1Q96F81 1524 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 H0YHG0 523 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 DPEP1P16444 411 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 RRP1P56182 461 aaKnown RBP5.68□□□□□ -1.5
SCN1A-218ENST00000640036 MICALL2Q8IY33 904 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 CCDC169A6NNP5 214 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 GTF2A2P52657 109 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 FKBP15Q5T1M5 1219 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 CHADLQ6NUI6 762 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 URGCPQ8TCY9 931 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 FER1L4A9Z1Z3 1794 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 GOLGA4Q13439 2230 aaKnown RBP5.68□□□□□ -1.5
SCN1A-218ENST00000640036 MAST1Q9Y2H9 1570 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 ECE2O60344 883 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 TRPA1O75762 1119 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 SPATA31A1Q5TZJ5 1347 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 XPAP23025 273 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-218ENST00000640036 LMAN1P49257 510 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms