RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 SPDYE2Q495Y8 402 aa17.62■□□□□ 0.41
LIMS3-206ENST00000631420 GIMAP6Q6P9H5 292 aa17.62■□□□□ 0.41
LIMS3-206ENST00000631420 CTR9Q6PD62 1173 aa17.62■□□□□ 0.41
LIMS3-206ENST00000631420 SAP30BPQ9UHR5 308 aaKnown RBP17.62■□□□□ 0.41
LIMS3-206ENST00000631420 SCAF8Q9UPN6 1271 aaKnown RBP17.62■□□□□ 0.41
LIMS3-206ENST00000631420 FLT1P17948 1338 aa17.62■□□□□ 0.41
LIMS3-206ENST00000631420 TCP10L2B9ZVM9 353 aa17.62■□□□□ 0.41
LIMS3-206ENST00000631420 CYP2D6P10635 497 aa17.62■□□□□ 0.41
LIMS3-206ENST00000631420 RBM25P49756 843 aaKnown RBP17.62■□□□□ 0.41
LIMS3-206ENST00000631420 TCP10Q12799 353 aa17.62■□□□□ 0.41
LIMS3-206ENST00000631420 IDI2Q9BXS1 227 aa17.62■□□□□ 0.41
LIMS3-206ENST00000631420 MCM9Q9NXL9 1143 aa17.62■□□□□ 0.41
LIMS3-206ENST00000631420 CTNNA3Q9UI47 895 aa17.62■□□□□ 0.41
LIMS3-206ENST00000631420 MINDY4BA8MYZ0 360 aa17.61■□□□□ 0.41
LIMS3-206ENST00000631420 KCNB2Q92953 911 aa17.61■□□□□ 0.41
LIMS3-206ENST00000631420 VEZTQ9HBM0 779 aa17.61■□□□□ 0.41
LIMS3-206ENST00000631420 ADARB2Q9NS39 739 aaKnown RBP17.61■□□□□ 0.41
LIMS3-206ENST00000631420 HACL1Q9UJ83 578 aa17.61■□□□□ 0.41
LIMS3-206ENST00000631420 SNX14Q9Y5W7 946 aa17.61■□□□□ 0.41
LIMS3-206ENST00000631420 ZNF213O14771 459 aa17.6■□□□□ 0.41
LIMS3-206ENST00000631420 MYO1BO43795 1136 aa17.6■□□□□ 0.41
LIMS3-206ENST00000631420 MCCP23508 829 aa17.6■□□□□ 0.41
LIMS3-206ENST00000631420 CTDSPL2Q05D32 466 aa17.6■□□□□ 0.41
LIMS3-206ENST00000631420 STK11IPQ8N1F8 1099 aa17.6■□□□□ 0.41
LIMS3-206ENST00000631420 DDRGK1Q96HY6 314 aa17.6■□□□□ 0.41
LIMS3-206ENST00000631420 OSBPL5Q9H0X9 879 aaPredicted RBP17.6■□□□□ 0.41
LIMS3-206ENST00000631420 INCENPQ9NQS7 918 aa17.6■□□□□ 0.41
LIMS3-206ENST00000631420 TSHZ2Q9NRE2 1034 aa17.6■□□□□ 0.41
LIMS3-206ENST00000631420 TACC3Q9Y6A5 838 aa17.6■□□□□ 0.41
LIMS3-206ENST00000631420 PLCD1P51178 756 aa17.59■□□□□ 0.41
LIMS3-206ENST00000631420 IMMTQ16891 758 aaKnown RBP17.59■□□□□ 0.41
LIMS3-206ENST00000631420 KIF2CQ99661 725 aa17.59■□□□□ 0.41
LIMS3-206ENST00000631420 NBPF3Q9H094 633 aa17.59■□□□□ 0.41
LIMS3-206ENST00000631420 TMOD2Q9NZR1 351 aa17.59■□□□□ 0.41
LIMS3-206ENST00000631420 ZMYM6O95789 1325 aa17.59■□□□□ 0.41
LIMS3-206ENST00000631420 POLR3DP05423 398 aaPredicted RBP17.58■□□□□ 0.41
LIMS3-206ENST00000631420 EPHX2P34913 555 aa17.58■□□□□ 0.41
LIMS3-206ENST00000631420 PPARAQ07869 468 aa17.58■□□□□ 0.41
LIMS3-206ENST00000631420 SBK1Q52WX2 424 aa17.58■□□□□ 0.41
LIMS3-206ENST00000631420 C12orf60Q5U649 245 aa17.58■□□□□ 0.41
LIMS3-206ENST00000631420 SH3BP5LQ7L8J4 393 aa17.58■□□□□ 0.41
LIMS3-206ENST00000631420 DDTLA6NHG4 134 aaPredicted RBP17.57■□□□□ 0.4
LIMS3-206ENST00000631420 ENTPD3O75355 529 aa17.57■□□□□ 0.4
LIMS3-206ENST00000631420 NPM3O75607 178 aaKnown RBP17.57■□□□□ 0.4
LIMS3-206ENST00000631420 COL9A3Q14050 684 aaPredicted RBP17.57■□□□□ 0.4
LIMS3-206ENST00000631420 ADCK5Q3MIX3 580 aa17.57■□□□□ 0.4
LIMS3-206ENST00000631420 ANGEL2Q5VTE6 544 aaKnown RBP17.57■□□□□ 0.4
LIMS3-206ENST00000631420 RNF20Q5VTR2 975 aa17.57■□□□□ 0.4
LIMS3-206ENST00000631420 STOX1Q6ZVD7 989 aa17.57■□□□□ 0.4
LIMS3-206ENST00000631420 TBC1D10CQ8IV04 446 aa17.57■□□□□ 0.4
LIMS3-206ENST00000631420 TAF1DQ9H5J8 278 aaPredicted RBP17.57■□□□□ 0.4
LIMS3-206ENST00000631420 ARPP21Q9UBL0 812 aaPredicted RBP17.57■□□□□ 0.4
LIMS3-206ENST00000631420 CNTNAP1P78357 1384 aa17.57■□□□□ 0.4
LIMS3-206ENST00000631420 SLURP2P0DP57 97 aa17.57■□□□□ 0.4
LIMS3-206ENST00000631420 DYNLL2Q96FJ2 89 aa17.57■□□□□ 0.4
LIMS3-206ENST00000631420 RRAGCQ9HB90 399 aa17.57■□□□□ 0.4
LIMS3-206ENST00000631420 E7EWF7 191 aa17.56■□□□□ 0.4
LIMS3-206ENST00000631420 ZKSCAN1P17029 563 aaPredicted RBP17.56■□□□□ 0.4
LIMS3-206ENST00000631420 TSGA10IPQ3SY00 556 aa17.56■□□□□ 0.4
LIMS3-206ENST00000631420 FKBP1CQ5VVH2 108 aa17.56■□□□□ 0.4
LIMS3-206ENST00000631420 CDAN1Q8IWY9 1227 aa17.56■□□□□ 0.4
LIMS3-206ENST00000631420 NKX2-3Q8TAU0 364 aa17.56■□□□□ 0.4
LIMS3-206ENST00000631420 ZNF526Q8TF50 670 aaPredicted RBP17.56■□□□□ 0.4
LIMS3-206ENST00000631420 FAM151AQ8WW52 585 aa17.56■□□□□ 0.4
LIMS3-206ENST00000631420 TMEM39BQ9GZU3 492 aa17.56■□□□□ 0.4
LIMS3-206ENST00000631420 GGA3Q9NZ52 723 aa17.56■□□□□ 0.4
LIMS3-206ENST00000631420 ANAPC4Q9UJX5 808 aa17.56■□□□□ 0.4
LIMS3-206ENST00000631420 IQCA1LA6NCM1 817 aa17.55■□□□□ 0.4
LIMS3-206ENST00000631420 ANAPC15P60006 121 aa17.55■□□□□ 0.4
LIMS3-206ENST00000631420 RASA3Q14644 834 aa17.55■□□□□ 0.4
LIMS3-206ENST00000631420 USP50Q70EL3 339 aaPredicted RBP17.55■□□□□ 0.4
LIMS3-206ENST00000631420 ZSCAN29Q8IWY8 852 aaPredicted RBP17.55■□□□□ 0.4
LIMS3-206ENST00000631420 EAPPQ56P03 285 aaPredicted RBP17.54■□□□□ 0.4
LIMS3-206ENST00000631420 FAM83AQ86UY5 434 aa17.54■□□□□ 0.4
LIMS3-206ENST00000631420 PGAP2Q9UHJ9 254 aa17.54■□□□□ 0.4
LIMS3-206ENST00000631420 CPA1P15085 419 aa17.53■□□□□ 0.4
LIMS3-206ENST00000631420 AKNAD1Q5T1N1 836 aa17.53■□□□□ 0.4
LIMS3-206ENST00000631420 TTC6Q86TZ1 520 aa17.53■□□□□ 0.4
LIMS3-206ENST00000631420 AMOTL1Q8IY63 956 aa17.53■□□□□ 0.4
LIMS3-206ENST00000631420 IL17RAQ96F46 866 aa17.53■□□□□ 0.4
LIMS3-206ENST00000631420 JAKMIP1Q96N16 626 aaKnown RBP17.53■□□□□ 0.4
LIMS3-206ENST00000631420 DHX36Q9H2U1 1008 aaKnown RBP17.53■□□□□ 0.4
LIMS3-206ENST00000631420 BAZ2AQ9UIF9 1905 aaKnown RBP17.53■□□□□ 0.4
LIMS3-206ENST00000631420 CDK5RAP2Q96SN8 1893 aa17.53■□□□□ 0.4
LIMS3-206ENST00000631420 NEDD4P46934 1319 aa17.53■□□□□ 0.4
LIMS3-206ENST00000631420 PRDM1O75626 825 aa17.53■□□□□ 0.4
LIMS3-206ENST00000631420 POTEIP0CG38 1075 aa17.53■□□□□ 0.4
LIMS3-206ENST00000631420 POTEJP0CG39 1038 aa17.53■□□□□ 0.4
LIMS3-206ENST00000631420 TNNI2P48788 182 aa17.53■□□□□ 0.4
LIMS3-206ENST00000631420 DLK2Q6UY11 383 aa17.53■□□□□ 0.4
LIMS3-206ENST00000631420 SLC44A5Q8NCS7 719 aa17.53■□□□□ 0.4
LIMS3-206ENST00000631420 STAG1Q8WVM7 1258 aa17.53■□□□□ 0.4
LIMS3-206ENST00000631420 NEK1Q96PY6 1258 aa17.53■□□□□ 0.4
LIMS3-206ENST00000631420 DEFB129Q9H1M3 183 aa17.53■□□□□ 0.4
LIMS3-206ENST00000631420 NMRK2Q9NPI5 230 aa17.53■□□□□ 0.4
LIMS3-206ENST00000631420 WDR90Q96KV7 1748 aa17.52■□□□□ 0.4
LIMS3-206ENST00000631420 VEGFAP15692 232 aaPredicted RBP17.52■□□□□ 0.39
LIMS3-206ENST00000631420 PRAMEF18Q5VWM3 479 aa17.52■□□□□ 0.39
LIMS3-206ENST00000631420 MFSD6Q6ZSS7 791 aa17.52■□□□□ 0.39
LIMS3-206ENST00000631420 TEPSINQ96N21 525 aa17.52■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 114.8 ms