RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 MAGEB6Q8N7X4 407 aa14.75□□□□□ -0.05
LINC00540-203ENST00000631321 KRT23Q9C075 422 aa14.75□□□□□ -0.05
LINC00540-203ENST00000631321 NAPBQ9H115 298 aa14.75□□□□□ -0.05
LINC00540-203ENST00000631321 HSD3B7Q9H2F3 369 aa14.75□□□□□ -0.05
LINC00540-203ENST00000631321 ZNF335Q9H4Z2 1342 aaPredicted RBP14.75□□□□□ -0.05
LINC00540-203ENST00000631321 SLC12A7Q9Y666 1083 aa14.75□□□□□ -0.05
LINC00540-203ENST00000631321 KIF2AO00139 706 aaPredicted RBP14.74□□□□□ -0.05
LINC00540-203ENST00000631321 SMC2O95347 1197 aa14.74□□□□□ -0.05
LINC00540-203ENST00000631321 GNAT2P19087 354 aa14.74□□□□□ -0.05
LINC00540-203ENST00000631321 EIF5P55010 431 aaKnown RBP14.74□□□□□ -0.05
LINC00540-203ENST00000631321 SSRP1Q08945 709 aaKnown RBP14.74□□□□□ -0.05
LINC00540-203ENST00000631321 HELBQ8NG08 1087 aaPredicted RBP14.74□□□□□ -0.05
LINC00540-203ENST00000631321 STAG1Q8WVM7 1258 aa14.74□□□□□ -0.05
LINC00540-203ENST00000631321 WASF1Q92558 559 aa14.74□□□□□ -0.05
LINC00540-203ENST00000631321 IFIT3O14879 490 aaKnown RBP14.74□□□□□ -0.05
LINC00540-203ENST00000631321 MYO1BO43795 1136 aa14.74□□□□□ -0.05
LINC00540-203ENST00000631321 GNL2Q13823 731 aaKnown RBP14.74□□□□□ -0.05
LINC00540-203ENST00000631321 ARMCX5Q6P1M9 558 aa14.74□□□□□ -0.05
LINC00540-203ENST00000631321 DOCK2Q92608 1830 aa14.74□□□□□ -0.05
LINC00540-203ENST00000631321 MYO5AQ9Y4I1 1855 aaKnown RBP14.73□□□□□ -0.05
LINC00540-203ENST00000631321 RTL9Q8NET4 1388 aa14.73□□□□□ -0.05
LINC00540-203ENST00000631321 STRCQ7RTU9 1775 aa14.73□□□□□ -0.05
LINC00540-203ENST00000631321 RCAN1P53805 252 aa14.73□□□□□ -0.05
LINC00540-203ENST00000631321 CTDSPL2Q05D32 466 aa14.73□□□□□ -0.05
LINC00540-203ENST00000631321 INCENPQ9NQS7 918 aa14.73□□□□□ -0.05
LINC00540-203ENST00000631321 PLCH1Q4KWH8 1693 aa14.73□□□□□ -0.05
LINC00540-203ENST00000631321 FANCCQ00597 558 aa14.73□□□□□ -0.05
LINC00540-203ENST00000631321 SUSD4Q5VX71 490 aa14.73□□□□□ -0.05
LINC00540-203ENST00000631321 TMC6Q7Z403 805 aa14.73□□□□□ -0.05
LINC00540-203ENST00000631321 NOSTRINQ8IVI9 506 aa14.73□□□□□ -0.05
LINC00540-203ENST00000631321 ARID3AQ99856 593 aa14.73□□□□□ -0.05
LINC00540-203ENST00000631321 MYL10Q9BUA6 226 aa14.73□□□□□ -0.05
LINC00540-203ENST00000631321 SLC26A6Q9BXS9 759 aa14.73□□□□□ -0.05
LINC00540-203ENST00000631321 ARMT1Q9H993 441 aa14.73□□□□□ -0.05
LINC00540-203ENST00000631321 PSDA5PKW4 1024 aaPredicted RBP14.72□□□□□ -0.05
LINC00540-203ENST00000631321 ECM29Q5VYK3 1845 aa14.72□□□□□ -0.05
LINC00540-203ENST00000631321 EXOC5O00471 708 aa14.72□□□□□ -0.05
LINC00540-203ENST00000631321 MMP1P03956 469 aa14.72□□□□□ -0.05
LINC00540-203ENST00000631321 SFPQP23246 707 aaKnown RBP eCLIP14.72□□□□□ -0.05
LINC00540-203ENST00000631321 MYL5Q02045 173 aa14.72□□□□□ -0.05
LINC00540-203ENST00000631321 E4F1Q66K89 784 aaPredicted RBP14.72□□□□□ -0.05
LINC00540-203ENST00000631321 KRBA2Q6ZNG9 492 aa14.72□□□□□ -0.05
LINC00540-203ENST00000631321 MFSD6Q6ZSS7 791 aa14.72□□□□□ -0.05
LINC00540-203ENST00000631321 METTL16Q86W50 562 aaKnown RBP14.72□□□□□ -0.05
LINC00540-203ENST00000631321 KRI1Q8N9T8 703 aaKnown RBP14.72□□□□□ -0.05
LINC00540-203ENST00000631321 CLIC6Q96NY7 704 aa14.72□□□□□ -0.05
LINC00540-203ENST00000631321 UTP14AQ9BVJ6 771 aaKnown RBP14.72□□□□□ -0.05
LINC00540-203ENST00000631321 NACAP1Q9BZK3 213 aa14.72□□□□□ -0.05
LINC00540-203ENST00000631321 COL14A1Q05707 1796 aaKnown RBP14.71□□□□□ -0.05
LINC00540-203ENST00000631321 PARP10Q53GL7 1025 aa14.71□□□□□ -0.05
LINC00540-203ENST00000631321 INTS5Q6P9B9 1019 aaKnown RBP14.71□□□□□ -0.05
LINC00540-203ENST00000631321 MPHOSPH8Q99549 860 aa14.71□□□□□ -0.05
LINC00540-203ENST00000631321 TRMT1Q9NXH9 659 aaKnown RBP14.71□□□□□ -0.05
LINC00540-203ENST00000631321 KCNH3Q9ULD8 1083 aa14.71□□□□□ -0.05
LINC00540-203ENST00000631321 CBFA2T2O43439 604 aa14.71□□□□□ -0.06
LINC00540-203ENST00000631321 TUBB4AP04350 444 aa14.71□□□□□ -0.06
LINC00540-203ENST00000631321 MDM2Q00987 491 aaPredicted RBP14.71□□□□□ -0.06
LINC00540-203ENST00000631321 PNOCQ13519 176 aa14.71□□□□□ -0.06
LINC00540-203ENST00000631321 TMTC2Q8N394 836 aa14.71□□□□□ -0.06
LINC00540-203ENST00000631321 LCORLQ8N3X6 602 aa14.71□□□□□ -0.06
LINC00540-203ENST00000631321 KIF18AQ8NI77 898 aa14.71□□□□□ -0.06
LINC00540-203ENST00000631321 ZNF592Q92610 1267 aa14.71□□□□□ -0.06
LINC00540-203ENST00000631321 FEZ1Q99689 392 aa14.71□□□□□ -0.06
LINC00540-203ENST00000631321 FOXP1Q9H334 677 aaPredicted RBP14.71□□□□□ -0.06
LINC00540-203ENST00000631321 UBE2Q2LH0YL09 131 aa14.7□□□□□ -0.06
LINC00540-203ENST00000631321 PRKAB2O43741 272 aa14.7□□□□□ -0.06
LINC00540-203ENST00000631321 LMOD1P29536 600 aaPredicted RBP14.7□□□□□ -0.06
LINC00540-203ENST00000631321 TOB1P50616 345 aaPredicted RBP14.7□□□□□ -0.06
LINC00540-203ENST00000631321 SART3Q15020 963 aaKnown RBP14.7□□□□□ -0.06
LINC00540-203ENST00000631321 RTN1Q16799 776 aa14.7□□□□□ -0.06
LINC00540-203ENST00000631321 LONRF3Q496Y0 759 aa14.7□□□□□ -0.06
LINC00540-203ENST00000631321 STK11IPQ8N1F8 1099 aa14.7□□□□□ -0.06
LINC00540-203ENST00000631321 SEC31BQ9NQW1 1179 aa14.7□□□□□ -0.06
LINC00540-203ENST00000631321 CGNQ9P2M7 1197 aaKnown RBP14.7□□□□□ -0.06
LINC00540-203ENST00000631321 SNAP23O00161 211 aa14.7□□□□□ -0.06
LINC00540-203ENST00000631321 ATP1A3P13637 1013 aa14.7□□□□□ -0.06
LINC00540-203ENST00000631321 PTPREP23469 700 aa14.7□□□□□ -0.06
LINC00540-203ENST00000631321 GUCY1A2P33402 732 aa14.7□□□□□ -0.06
LINC00540-203ENST00000631321 WTAPQ15007 396 aa14.7□□□□□ -0.06
LINC00540-203ENST00000631321 SAFBQ15424 915 aaKnown RBP eCLIP14.7□□□□□ -0.06
LINC00540-203ENST00000631321 CCDC152Q4G0S7 254 aa14.7□□□□□ -0.06
LINC00540-203ENST00000631321 FOXP4Q8IVH2 680 aaPredicted RBP14.7□□□□□ -0.06
LINC00540-203ENST00000631321 TRIM22Q8IYM9 498 aa14.7□□□□□ -0.06
LINC00540-203ENST00000631321 PPP1R13BQ96KQ4 1090 aa14.7□□□□□ -0.06
LINC00540-203ENST00000631321 RNF41Q9H4P4 317 aaPredicted RBP14.7□□□□□ -0.06
LINC00540-203ENST00000631321 CCDC87Q9NVE4 849 aa14.7□□□□□ -0.06
LINC00540-203ENST00000631321 SLC4A4Q9Y6R1 1079 aa14.7□□□□□ -0.06
LINC00540-203ENST00000631321 MORC2Q9Y6X9 1032 aaPredicted RBP14.7□□□□□ -0.06
LINC00540-203ENST00000631321 CCDC196A0A1B0GTZ2 297 aa14.69□□□□□ -0.06
LINC00540-203ENST00000631321 BTBD18B2RXH4 712 aa14.69□□□□□ -0.06
LINC00540-203ENST00000631321 NRDCO43847 1150 aa14.69□□□□□ -0.06
LINC00540-203ENST00000631321 TDO2P48775 406 aa14.69□□□□□ -0.06
LINC00540-203ENST00000631321 BCAMP50895 628 aa14.69□□□□□ -0.06
LINC00540-203ENST00000631321 RILPL1Q5EBL4 403 aa14.69□□□□□ -0.06
LINC00540-203ENST00000631321 DIS3L2Q8IYB7 885 aaKnown RBP14.69□□□□□ -0.06
LINC00540-203ENST00000631321 CRACR2BQ8N4Y2 399 aaPredicted RBP14.69□□□□□ -0.06
LINC00540-203ENST00000631321 ZNF579Q8NAF0 562 aaKnown RBP14.69□□□□□ -0.06
LINC00540-203ENST00000631321 CNNM3Q8NE01 707 aa14.69□□□□□ -0.06
LINC00540-203ENST00000631321 CAMTA2O94983 1202 aa14.68□□□□□ -0.06
LINC00540-203ENST00000631321 DEXIO95424 95 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms