RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 DMRTB1Q96MA1 342 aa6.05□□□□□ -1.44
SCN1A-208ENST00000625916 DUSP23Q9BVJ7 150 aa6.05□□□□□ -1.44
SCN1A-208ENST00000625916 NLRP2Q9NX02 1062 aa6.05□□□□□ -1.44
SCN1A-208ENST00000625916 PCDHGC5Q9Y5F6 944 aa6.05□□□□□ -1.44
SCN1A-208ENST00000625916 CEACAM5P06731 702 aa6.04□□□□□ -1.44
SCN1A-208ENST00000625916 RNASE1P07998 156 aaKnown RBP6.04□□□□□ -1.44
SCN1A-208ENST00000625916 LCE1DQ5T752 114 aa6.04□□□□□ -1.44
SCN1A-208ENST00000625916 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.04□□□□□ -1.44
SCN1A-208ENST00000625916 MKNK2Q9HBH9 465 aa6.04□□□□□ -1.44
SCN1A-208ENST00000625916 MBNL3Q9NUK0 354 aaKnown RBP6.04□□□□□ -1.44
SCN1A-208ENST00000625916 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-208ENST00000625916 U3KQE9 123 aa6.04□□□□□ -1.44
SCN1A-208ENST00000625916 CARMIL2Q6F5E8 1435 aa6.04□□□□□ -1.44
SCN1A-208ENST00000625916 TMEM265A0A087WTH1 108 aa6.03□□□□□ -1.44
SCN1A-208ENST00000625916 IGHA2P01877 340 aa6.03□□□□□ -1.44
SCN1A-208ENST00000625916 ITIH2P19823 946 aa6.03□□□□□ -1.44
SCN1A-208ENST00000625916 OXCT1P55809 520 aa6.03□□□□□ -1.44
SCN1A-208ENST00000625916 PKN1Q16512 942 aa6.03□□□□□ -1.44
SCN1A-208ENST00000625916 SULF2Q8IWU5 870 aa6.03□□□□□ -1.44
SCN1A-208ENST00000625916 TOP6BLQ8N6T0 577 aa6.03□□□□□ -1.44
SCN1A-208ENST00000625916 ISL2Q96A47 359 aa6.03□□□□□ -1.44
SCN1A-208ENST00000625916 ADAMTS6Q9UKP5 1117 aa6.03□□□□□ -1.44
SCN1A-208ENST00000625916 AKAP2Q9Y2D5 859 aa6.03□□□□□ -1.44
SCN1A-208ENST00000625916 FARP2O94887 1054 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-208ENST00000625916 NEFMP07197 916 aa6.02□□□□□ -1.45
SCN1A-208ENST00000625916 XRCC5P13010 732 aaKnown RBP6.02□□□□□ -1.45
SCN1A-208ENST00000625916 ZNF124Q15973 351 aa6.02□□□□□ -1.45
SCN1A-208ENST00000625916 ANGEL2Q5VTE6 544 aaKnown RBP6.02□□□□□ -1.45
SCN1A-208ENST00000625916 MAP1SQ66K74 1059 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-208ENST00000625916 PI16Q6UXB8 463 aa6.02□□□□□ -1.45
SCN1A-208ENST00000625916 PDZD3Q86UT5 571 aa6.02□□□□□ -1.45
SCN1A-208ENST00000625916 LRRN4CLQ8ND94 238 aa6.02□□□□□ -1.45
SCN1A-208ENST00000625916 ALKBH8Q96BT7 664 aaKnown RBP6.02□□□□□ -1.45
SCN1A-208ENST00000625916 ACSBG1Q96GR2 724 aa6.02□□□□□ -1.45
SCN1A-208ENST00000625916 BCO2Q9BYV7 579 aa6.02□□□□□ -1.45
SCN1A-208ENST00000625916 ARNTP27540 789 aa6.01□□□□□ -1.45
SCN1A-208ENST00000625916 ZC3H12AQ5D1E8 599 aaKnown RBP6.01□□□□□ -1.45
SCN1A-208ENST00000625916 TXNDC2Q86VQ3 553 aa6.01□□□□□ -1.45
SCN1A-208ENST00000625916 KSR1Q8IVT5 923 aa6.01□□□□□ -1.45
SCN1A-208ENST00000625916 RNF214Q8ND24 703 aa6.01□□□□□ -1.45
SCN1A-208ENST00000625916 CCER1Q8TC90 406 aaPredicted RBP6.01□□□□□ -1.45
SCN1A-208ENST00000625916 STK35Q8TDR2 534 aa6.01□□□□□ -1.45
SCN1A-208ENST00000625916 TMEM40Q8WWA1 233 aa6.01□□□□□ -1.45
SCN1A-208ENST00000625916 EMILIN2Q9BXX0 1053 aa6.01□□□□□ -1.45
SCN1A-208ENST00000625916 RBCK1Q9BYM8 510 aa6.01□□□□□ -1.45
SCN1A-208ENST00000625916 CBX8Q9HC52 389 aa6.01□□□□□ -1.45
SCN1A-208ENST00000625916 PICK1Q9NRD5 415 aa6.01□□□□□ -1.45
SCN1A-208ENST00000625916 PLAGL2Q9UPG8 496 aa6.01□□□□□ -1.45
SCN1A-208ENST00000625916 NME2P22392 152 aa6□□□□□ -1.45
SCN1A-208ENST00000625916 ERVK-24P63145 666 aa6□□□□□ -1.45
SCN1A-208ENST00000625916 GPBAR1Q8TDU6 330 aa6□□□□□ -1.45
SCN1A-208ENST00000625916 DBX1A6NMT0 343 aa5.99□□□□□ -1.45
SCN1A-208ENST00000625916 SLC23A3Q6PIS1 610 aa5.99□□□□□ -1.45
SCN1A-208ENST00000625916 SLC38A3Q99624 504 aa5.99□□□□□ -1.45
SCN1A-208ENST00000625916 GTF2IRD1Q9UHL9 959 aa5.99□□□□□ -1.45
SCN1A-208ENST00000625916 SNX11Q9Y5W9 270 aa5.99□□□□□ -1.45
SCN1A-208ENST00000625916 CSADQ9Y600 493 aa5.99□□□□□ -1.45
SCN1A-208ENST00000625916 IKZF1Q13422 519 aa5.98□□□□□ -1.45
SCN1A-208ENST00000625916 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.98□□□□□ -1.45
SCN1A-208ENST00000625916 NXPE4Q6UWF7 544 aa5.98□□□□□ -1.45
SCN1A-208ENST00000625916 TMC7Q7Z402 723 aa5.98□□□□□ -1.45
SCN1A-208ENST00000625916 C14orf37Q86TY3 774 aa5.98□□□□□ -1.45
SCN1A-208ENST00000625916 ASB11Q8WXH4 323 aa5.98□□□□□ -1.45
SCN1A-208ENST00000625916 HEXIM2Q96MH2 286 aaKnown RBP5.98□□□□□ -1.45
SCN1A-208ENST00000625916 KRTAP4-7Q9BYR0 210 aa5.98□□□□□ -1.45
SCN1A-208ENST00000625916 PRDM7Q9NQW5 492 aa5.98□□□□□ -1.45
SCN1A-208ENST00000625916 BIN2Q9UBW5 565 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-208ENST00000625916 PPM1JQ5JR12 505 aa5.97□□□□□ -1.45
SCN1A-208ENST00000625916 TNKS2Q9H2K2 1166 aa5.97□□□□□ -1.45
SCN1A-208ENST00000625916 PRDM10Q9NQV6 1147 aa5.97□□□□□ -1.45
SCN1A-208ENST00000625916 SAMM50Q9Y512 469 aa5.97□□□□□ -1.45
SCN1A-208ENST00000625916 PNMA6FA0A0J9YX94 578 aa5.96□□□□□ -1.46
SCN1A-208ENST00000625916 GNAT3A8MTJ3 354 aa5.96□□□□□ -1.46
SCN1A-208ENST00000625916 DCDC2CA8MYV0 355 aa5.96□□□□□ -1.46
SCN1A-208ENST00000625916 IGF2BP3O00425 579 aaKnown RBP eCLIP5.96□□□□□ -1.46
SCN1A-208ENST00000625916 ZP2Q05996 745 aa5.96□□□□□ -1.46
SCN1A-208ENST00000625916 PDE4CQ08493 712 aa5.96□□□□□ -1.46
SCN1A-208ENST00000625916 ZNF252P-AS1Q0IIN9 211 aa5.96□□□□□ -1.46
SCN1A-208ENST00000625916 KCNMB1Q16558 191 aa5.96□□□□□ -1.46
SCN1A-208ENST00000625916 MPRIPQ6WCQ1 1025 aa5.96□□□□□ -1.46
SCN1A-208ENST00000625916 CDC37L1Q7L3B6 337 aa5.96□□□□□ -1.46
SCN1A-208ENST00000625916 ZSWIM9Q86XI8 627 aa5.96□□□□□ -1.46
SCN1A-208ENST00000625916 FLAD1Q8NFF5 587 aa5.96□□□□□ -1.46
SCN1A-208ENST00000625916 LRRC10BA6NIK2 292 aa5.95□□□□□ -1.46
SCN1A-208ENST00000625916 SOWAHDA6NJG2 315 aa5.95□□□□□ -1.46
SCN1A-208ENST00000625916 PLCB3Q01970 1234 aa5.95□□□□□ -1.46
SCN1A-208ENST00000625916 TPTE2Q6XPS3 522 aa5.95□□□□□ -1.46
SCN1A-208ENST00000625916 FAM214BQ7L5A3 538 aa5.95□□□□□ -1.46
SCN1A-208ENST00000625916 C12orf40Q86WS4 652 aa5.95□□□□□ -1.46
SCN1A-208ENST00000625916 GRIN3AQ8TCU5 1115 aa5.95□□□□□ -1.46
SCN1A-208ENST00000625916 NECAB3Q96P71 396 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-208ENST00000625916 ARID3AQ99856 593 aa5.95□□□□□ -1.46
SCN1A-208ENST00000625916 DCTN4Q9UJW0 460 aa5.95□□□□□ -1.46
SCN1A-208ENST00000625916 GSTT1P30711 240 aa5.94□□□□□ -1.46
SCN1A-208ENST00000625916 MLANAQ16655 118 aa5.94□□□□□ -1.46
SCN1A-208ENST00000625916 SPACA3Q8IXA5 215 aa5.94□□□□□ -1.46
SCN1A-208ENST00000625916 RETREG2Q8NC44 543 aa5.94□□□□□ -1.46
SCN1A-208ENST00000625916 FAM84AQ96KN4 292 aa5.94□□□□□ -1.46
SCN1A-208ENST00000625916 CEP44Q9C0F1 390 aa5.94□□□□□ -1.46
SCN1A-208ENST00000625916 FAM53CQ9NYF3 392 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms