RNA–Protein interactions for RNA: ENST00000625716.2

TCF4-249, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 359 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-249ENST00000625716 CCDC57Q2TAC2 916 aa8.05□□□□□ -1.12
TCF4-249ENST00000625716 USP50Q70EL3 339 aaPredicted RBP8.05□□□□□ -1.12
TCF4-249ENST00000625716 TRMT2AQ8IZ69 625 aaKnown RBP8.05□□□□□ -1.12
TCF4-249ENST00000625716 ANKRD2Q9GZV1 360 aa8.05□□□□□ -1.12
TCF4-249ENST00000625716 MINPP1Q9UNW1 487 aa8.05□□□□□ -1.12
TCF4-249ENST00000625716 RTL9Q8NET4 1388 aa8.05□□□□□ -1.12
TCF4-249ENST00000625716 TIMP2P16035 220 aa8.04□□□□□ -1.12
TCF4-249ENST00000625716 GRM5P41594 1212 aa8.04□□□□□ -1.12
TCF4-249ENST00000625716 GMPSP49915 693 aaPredicted RBP8.04□□□□□ -1.12
TCF4-249ENST00000625716 CCT4P50991 539 aaKnown RBP8.04□□□□□ -1.12
TCF4-249ENST00000625716 SCNN1DP51172 638 aa8.04□□□□□ -1.12
TCF4-249ENST00000625716 CASP7P55210 303 aa8.04□□□□□ -1.12
TCF4-249ENST00000625716 LMBR1LQ6UX01 489 aa8.04□□□□□ -1.12
TCF4-249ENST00000625716 ZFP42Q96MM3 310 aa8.04□□□□□ -1.12
TCF4-249ENST00000625716 GPR101Q96P66 508 aaPredicted RBP8.04□□□□□ -1.12
TCF4-249ENST00000625716 ADARB2Q9NS39 739 aaKnown RBP8.04□□□□□ -1.12
TCF4-249ENST00000625716 POLR3EQ9NVU0 708 aa8.04□□□□□ -1.12
TCF4-249ENST00000625716 GPRC5DQ9NZD1 345 aa8.04□□□□□ -1.12
TCF4-249ENST00000625716 CACNA1FO60840 1977 aa8.03□□□□□ -1.12
TCF4-249ENST00000625716 COL4A5P29400 1685 aa8.03□□□□□ -1.12
TCF4-249ENST00000625716 YDJCA8MPS7 323 aa8.03□□□□□ -1.12
TCF4-249ENST00000625716 PSMD14O00487 310 aa8.03□□□□□ -1.12
TCF4-249ENST00000625716 ADH1CP00326 375 aa8.03□□□□□ -1.12
TCF4-249ENST00000625716 NR3C2P08235 984 aa8.03□□□□□ -1.12
TCF4-249ENST00000625716 RPS12P25398 132 aaKnown RBP8.03□□□□□ -1.12
TCF4-249ENST00000625716 FOXO4P98177 505 aa8.03□□□□□ -1.12
TCF4-249ENST00000625716 LDHAL6AQ6ZMR3 332 aa8.03□□□□□ -1.12
TCF4-249ENST00000625716 CNTROBQ8N137 903 aa8.03□□□□□ -1.12
TCF4-249ENST00000625716 FAM174AQ8TBP5 190 aa8.03□□□□□ -1.12
TCF4-249ENST00000625716 DPF2Q92785 391 aa8.03□□□□□ -1.12
TCF4-249ENST00000625716 API5Q9BZZ5 524 aaKnown RBP8.03□□□□□ -1.12
TCF4-249ENST00000625716 CNNM1Q9NRU3 951 aa8.03□□□□□ -1.12
TCF4-249ENST00000625716 CNOT7Q9UIV1 285 aaKnown RBP8.03□□□□□ -1.12
TCF4-249ENST00000625716 LEMD3Q9Y2U8 911 aa8.03□□□□□ -1.12
TCF4-249ENST00000625716 SCN4AP35499 1836 aa8.03□□□□□ -1.12
TCF4-249ENST00000625716 TAF1P21675 1872 aa8.02□□□□□ -1.12
TCF4-249ENST00000625716 IPO8O15397 1037 aaKnown RBP8.02□□□□□ -1.13
TCF4-249ENST00000625716 NBPF7P0C2Y1 421 aaPredicted RBP8.02□□□□□ -1.13
TCF4-249ENST00000625716 CLK2P49760 499 aaKnown RBP8.02□□□□□ -1.13
TCF4-249ENST00000625716 HTRA3P83110 453 aa8.02□□□□□ -1.13
TCF4-249ENST00000625716 CHRNDQ07001 517 aa8.02□□□□□ -1.13
TCF4-249ENST00000625716 MAP1SQ66K74 1059 aaPredicted RBP8.02□□□□□ -1.13
TCF4-249ENST00000625716 PODNQ7Z5L7 613 aa8.02□□□□□ -1.13
TCF4-249ENST00000625716 TSC1Q92574 1164 aa8.02□□□□□ -1.13
TCF4-249ENST00000625716 NOB1Q9ULX3 412 aaKnown RBP8.02□□□□□ -1.13
TCF4-249ENST00000625716 HDAC5Q9UQL6 1122 aa8.02□□□□□ -1.13
TCF4-249ENST00000625716 ZNF804BA4D1E1 1349 aa8.02□□□□□ -1.13
TCF4-249ENST00000625716 LRRC37AA6NMS7 1700 aa8.01□□□□□ -1.13
TCF4-249ENST00000625716 MED23Q9ULK4 1368 aa8.01□□□□□ -1.13
TCF4-249ENST00000625716 USP17L3A6NCW0 530 aa8.01□□□□□ -1.13
TCF4-249ENST00000625716 USP17L4A6NCW7 530 aa8.01□□□□□ -1.13
TCF4-249ENST00000625716 TMEM88BA6NKF7 163 aa8.01□□□□□ -1.13
TCF4-249ENST00000625716 PLIN1O60240 522 aa8.01□□□□□ -1.13
TCF4-249ENST00000625716 WDR4P57081 412 aaKnown RBP8.01□□□□□ -1.13
TCF4-249ENST00000625716 USP17L1Q7RTZ2 530 aa8.01□□□□□ -1.13
TCF4-249ENST00000625716 SH3RF1Q7Z6J0 888 aa8.01□□□□□ -1.13
TCF4-249ENST00000625716 KLRG1Q96E93 195 aa8.01□□□□□ -1.13
TCF4-249ENST00000625716 SUCLG2Q96I99 432 aa8.01□□□□□ -1.13
TCF4-249ENST00000625716 COA1Q9GZY4 146 aa8.01□□□□□ -1.13
TCF4-249ENST00000625716 KCNQ5Q9NR82 932 aa8.01□□□□□ -1.13
TCF4-249ENST00000625716 DUOX1Q9NRD9 1551 aa8.01□□□□□ -1.13
TCF4-249ENST00000625716 UTYO14607 1347 aa8.01□□□□□ -1.13
TCF4-249ENST00000625716 KIF16BQ96L93 1317 aa8.01□□□□□ -1.13
TCF4-249ENST00000625716 COL4A1P02462 1669 aa8□□□□□ -1.13
TCF4-249ENST00000625716 TAF5LO75529 589 aa8□□□□□ -1.13
TCF4-249ENST00000625716 VIL1P09327 827 aaKnown RBP8□□□□□ -1.13
TCF4-249ENST00000625716 UBTFL1P0CB47 393 aaPredicted RBP8□□□□□ -1.13
TCF4-249ENST00000625716 RARSP54136 660 aaKnown RBP8□□□□□ -1.13
TCF4-249ENST00000625716 BRPF1P55201 1214 aaPredicted RBP8□□□□□ -1.13
TCF4-249ENST00000625716 ARID5BQ14865 1188 aa8□□□□□ -1.13
TCF4-249ENST00000625716 EPHA10Q5JZY3 1008 aa8□□□□□ -1.13
TCF4-249ENST00000625716 MRPL14Q6P1L8 145 aaKnown RBP8□□□□□ -1.13
TCF4-249ENST00000625716 DNAJC5GQ8N7S2 189 aa8□□□□□ -1.13
TCF4-249ENST00000625716 AGBL3Q8NEM8 1001 aa8□□□□□ -1.13
TCF4-249ENST00000625716 HELBQ8NG08 1087 aaPredicted RBP8□□□□□ -1.13
TCF4-249ENST00000625716 ARHGAP45Q92619 1136 aa8□□□□□ -1.13
TCF4-249ENST00000625716 FRAT1Q92837 279 aaPredicted RBP8□□□□□ -1.13
TCF4-249ENST00000625716 ZNF594Q96JF6 807 aaPredicted RBP8□□□□□ -1.13
TCF4-249ENST00000625716 C1QTNF2Q9BXJ5 285 aa8□□□□□ -1.13
TCF4-249ENST00000625716 BICC1Q9H694 974 aaKnown RBP8□□□□□ -1.13
TCF4-249ENST00000625716 ZFAND3Q9H8U3 227 aa8□□□□□ -1.13
TCF4-249ENST00000625716 NXF1Q9UBU9 619 aaKnown RBP8□□□□□ -1.13
TCF4-249ENST00000625716 PASKQ96RG2 1323 aa8□□□□□ -1.13
TCF4-249ENST00000625716 WTIPA6NIX2 430 aaPredicted RBP7.99□□□□□ -1.13
TCF4-249ENST00000625716 USP17L8P0C7I0 530 aa7.99□□□□□ -1.13
TCF4-249ENST00000625716 VEGFBP49765 207 aa7.99□□□□□ -1.13
TCF4-249ENST00000625716 CTDSPL2Q05D32 466 aa7.99□□□□□ -1.13
TCF4-249ENST00000625716 TBC1D10BQ4KMP7 808 aaPredicted RBP7.99□□□□□ -1.13
TCF4-249ENST00000625716 STRIP1Q5VSL9 837 aa7.99□□□□□ -1.13
TCF4-249ENST00000625716 CDC37L1Q7L3B6 337 aa7.99□□□□□ -1.13
TCF4-249ENST00000625716 SH3BP5LQ7L8J4 393 aa7.99□□□□□ -1.13
TCF4-249ENST00000625716 ZNF804AQ7Z570 1209 aa7.99□□□□□ -1.13
TCF4-249ENST00000625716 BPHLQ86WA6 291 aaPredicted RBP7.99□□□□□ -1.13
TCF4-249ENST00000625716 OGFOD1Q8N543 542 aa7.99□□□□□ -1.13
TCF4-249ENST00000625716 DCPSQ96C86 337 aaKnown RBP7.99□□□□□ -1.13
TCF4-249ENST00000625716 ITPKCQ96DU7 683 aa7.99□□□□□ -1.13
TCF4-249ENST00000625716 USP44Q9H0E7 712 aa7.99□□□□□ -1.13
TCF4-249ENST00000625716 ABT1Q9ULW3 272 aaKnown RBP7.99□□□□□ -1.13
TCF4-249ENST00000625716 MROH5Q6ZUA9 1318 aa7.99□□□□□ -1.13
TCF4-249ENST00000625716 MYO3BQ8WXR4 1341 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms