RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 IGF2BP3O00425 579 aaKnown RBP eCLIP15.42■□□□□ 0.06
PNKP-217ENST00000625216 FKTNO75072 461 aa15.42■□□□□ 0.06
PNKP-217ENST00000625216 RGS3P49796 1198 aa15.42■□□□□ 0.06
PNKP-217ENST00000625216 PI16Q6UXB8 463 aa15.42■□□□□ 0.06
PNKP-217ENST00000625216 TBC1D9Q6ZT07 1266 aa15.42■□□□□ 0.06
PNKP-217ENST00000625216 MIGA2Q7L4E1 593 aa15.42■□□□□ 0.06
PNKP-217ENST00000625216 ZKSCAN4Q969J2 545 aaPredicted RBP15.42■□□□□ 0.06
PNKP-217ENST00000625216 RAI14Q9P0K7 980 aa15.42■□□□□ 0.06
PNKP-217ENST00000625216 SNCAIPQ9Y6H5 919 aa15.42■□□□□ 0.06
PNKP-217ENST00000625216 CASP8AP2Q9UKL3 1982 aa15.42■□□□□ 0.06
PNKP-217ENST00000625216 CCDC85CA6NKD9 419 aa15.41■□□□□ 0.06
PNKP-217ENST00000625216 WDHD1O75717 1129 aaPredicted RBP15.41■□□□□ 0.06
PNKP-217ENST00000625216 PPATQ06203 517 aa15.41■□□□□ 0.06
PNKP-217ENST00000625216 ZNF384Q8TF68 577 aa15.41■□□□□ 0.06
PNKP-217ENST00000625216 OTUD5Q96G74 571 aa15.41■□□□□ 0.06
PNKP-217ENST00000625216 PTPN18Q99952 460 aa15.41■□□□□ 0.06
PNKP-217ENST00000625216 CCL15-CCL14A0A0B4J2E2 113 aa15.4■□□□□ 0.06
PNKP-217ENST00000625216 CETPP11597 493 aa15.4■□□□□ 0.06
PNKP-217ENST00000625216 RHBDL3P58872 404 aa15.4■□□□□ 0.06
PNKP-217ENST00000625216 MAP3K10Q02779 954 aa15.4■□□□□ 0.06
PNKP-217ENST00000625216 NUCB1Q02818 461 aa15.4■□□□□ 0.06
PNKP-217ENST00000625216 PPIL2Q13356 520 aa15.4■□□□□ 0.06
PNKP-217ENST00000625216 SNAPC2Q13487 334 aa15.4■□□□□ 0.06
PNKP-217ENST00000625216 CCL15Q16663 113 aa15.4■□□□□ 0.06
PNKP-217ENST00000625216 ZSCAN29Q8IWY8 852 aaPredicted RBP15.4■□□□□ 0.06
PNKP-217ENST00000625216 ZFPM1Q8IX07 1006 aa15.4■□□□□ 0.06
PNKP-217ENST00000625216 CNKSR2Q8WXI2 1034 aa15.4■□□□□ 0.06
PNKP-217ENST00000625216 BRI3BPQ8WY22 251 aa15.4■□□□□ 0.06
PNKP-217ENST00000625216 EAF2Q96CJ1 260 aaPredicted RBP15.4■□□□□ 0.06
PNKP-217ENST00000625216 R3HDMLQ9H3Y0 253 aa15.4■□□□□ 0.06
PNKP-217ENST00000625216 DBNLQ9UJU6 430 aaKnown RBP15.4■□□□□ 0.06
PNKP-217ENST00000625216 EXOC6BQ9Y2D4 811 aa15.4■□□□□ 0.06
PNKP-217ENST00000625216 BAG3O95817 575 aa15.39■□□□□ 0.05
PNKP-217ENST00000625216 PDE4AP27815 886 aa15.39■□□□□ 0.05
PNKP-217ENST00000625216 INPP5BP32019 993 aa15.39■□□□□ 0.05
PNKP-217ENST00000625216 NOL9Q5SY16 702 aaKnown RBP15.39■□□□□ 0.05
PNKP-217ENST00000625216 NOL10Q9BSC4 688 aaKnown RBP15.39■□□□□ 0.05
PNKP-217ENST00000625216 CCDC8Q9H0W5 538 aaPredicted RBP15.39■□□□□ 0.05
PNKP-217ENST00000625216 ZCCHC17Q9NP64 241 aaKnown RBP15.39■□□□□ 0.05
PNKP-217ENST00000625216 SNRKQ9NRH2 765 aa15.39■□□□□ 0.05
PNKP-217ENST00000625216 MYH13Q9UKX3 1938 aa15.39■□□□□ 0.05
PNKP-217ENST00000625216 RFX7Q2KHR2 1363 aa15.38■□□□□ 0.05
PNKP-217ENST00000625216 IRF6O14896 467 aa15.38■□□□□ 0.05
PNKP-217ENST00000625216 CYP2E1P05181 493 aaPredicted RBP15.38■□□□□ 0.05
PNKP-217ENST00000625216 PLCG2P16885 1265 aa15.38■□□□□ 0.05
PNKP-217ENST00000625216 PPP4CP60510 307 aa15.38■□□□□ 0.05
PNKP-217ENST00000625216 CRHR2Q13324 411 aa15.38■□□□□ 0.05
PNKP-217ENST00000625216 NAA16Q6N069 864 aaPredicted RBP15.38■□□□□ 0.05
PNKP-217ENST00000625216 TMED8Q6PL24 325 aaPredicted RBP15.38■□□□□ 0.05
PNKP-217ENST00000625216 SH3BP5LQ7L8J4 393 aa15.38■□□□□ 0.05
PNKP-217ENST00000625216 RHPN1Q8TCX5 695 aa15.38■□□□□ 0.05
PNKP-217ENST00000625216 KIF1BPQ96EK5 621 aa15.38■□□□□ 0.05
PNKP-217ENST00000625216 ZFYVE28Q9HCC9 887 aa15.38■□□□□ 0.05
PNKP-217ENST00000625216 DDX4Q9NQI0 724 aaKnown RBP15.38■□□□□ 0.05
PNKP-217ENST00000625216 PHF20L1A8MW92 1017 aa15.37■□□□□ 0.05
PNKP-217ENST00000625216 TBC1D12O60347 775 aa15.37■□□□□ 0.05
PNKP-217ENST00000625216 RAB11FIP3O75154 756 aa15.37■□□□□ 0.05
PNKP-217ENST00000625216 ZAP70P43403 619 aa15.37■□□□□ 0.05
PNKP-217ENST00000625216 PICALMQ13492 652 aa15.37■□□□□ 0.05
PNKP-217ENST00000625216 ANKRD45Q5TZF3 282 aa15.37■□□□□ 0.05
PNKP-217ENST00000625216 AACSQ86V21 672 aa15.37■□□□□ 0.05
PNKP-217ENST00000625216 CHD1LQ86WJ1 897 aa15.37■□□□□ 0.05
PNKP-217ENST00000625216 CLASRPQ8N2M8 674 aaKnown RBP15.37■□□□□ 0.05
PNKP-217ENST00000625216 LNPKQ9C0E8 428 aa15.37■□□□□ 0.05
PNKP-217ENST00000625216 TLR7Q9NYK1 1049 aaKnown RBP15.37■□□□□ 0.05
PNKP-217ENST00000625216 ATRNL1Q5VV63 1379 aa15.36■□□□□ 0.05
PNKP-217ENST00000625216 DDTLA6NHG4 134 aaPredicted RBP15.36■□□□□ 0.05
PNKP-217ENST00000625216 CXCL11O14625 94 aa15.36■□□□□ 0.05
PNKP-217ENST00000625216 SMARCA5O60264 1052 aaPredicted RBP15.36■□□□□ 0.05
PNKP-217ENST00000625216 RGS19P49795 217 aa15.36■□□□□ 0.05
PNKP-217ENST00000625216 TAF1CQ15572 869 aaPredicted RBP15.36■□□□□ 0.05
PNKP-217ENST00000625216 TEX11Q8IYF3 940 aa15.36■□□□□ 0.05
PNKP-217ENST00000625216 ERO1AQ96HE7 468 aa15.36■□□□□ 0.05
PNKP-217ENST00000625216 KCNH4Q9UQ05 1017 aa15.36■□□□□ 0.05
PNKP-217ENST00000625216 APBB1O00213 710 aa15.35■□□□□ 0.05
PNKP-217ENST00000625216 CTNND1O60716 968 aaKnown RBP15.35■□□□□ 0.05
PNKP-217ENST00000625216 SP3Q02447 781 aa15.35■□□□□ 0.05
PNKP-217ENST00000625216 ARHGEF6Q15052 776 aa15.35■□□□□ 0.05
PNKP-217ENST00000625216 FBXO46Q6PJ61 603 aaPredicted RBP15.35■□□□□ 0.05
PNKP-217ENST00000625216 CERS3Q8IU89 383 aa15.35■□□□□ 0.05
PNKP-217ENST00000625216 SCYL3Q8IZE3 742 aa15.35■□□□□ 0.05
PNKP-217ENST00000625216 FAM43AQ8N2R8 423 aa15.35■□□□□ 0.05
PNKP-217ENST00000625216 OSBPL5Q9H0X9 879 aaPredicted RBP15.35■□□□□ 0.05
PNKP-217ENST00000625216 PICK1Q9NRD5 415 aa15.35■□□□□ 0.05
PNKP-217ENST00000625216 BTBD19C9JJ37 291 aa15.34■□□□□ 0.05
PNKP-217ENST00000625216 DHX36Q9H2U1 1008 aaKnown RBP15.34■□□□□ 0.05
PNKP-217ENST00000625216 IL1RAPL2Q9NP60 686 aa15.34■□□□□ 0.05
PNKP-217ENST00000625216 PIH1D3Q9NQM4 214 aaKnown RBP15.34■□□□□ 0.05
PNKP-217ENST00000625216 HPS5Q9UPZ3 1129 aa15.34■□□□□ 0.05
PNKP-217ENST00000625216 COL2A1P02458 1487 aaPredicted RBP15.33■□□□□ 0.05
PNKP-217ENST00000625216 IFIT2P09913 472 aaKnown RBP15.33■□□□□ 0.04
PNKP-217ENST00000625216 MAP3K12Q12852 859 aa15.33■□□□□ 0.04
PNKP-217ENST00000625216 TTF1Q15361 905 aaPredicted RBP15.33■□□□□ 0.04
PNKP-217ENST00000625216 ANKRD23Q86SG2 305 aa15.33■□□□□ 0.04
PNKP-217ENST00000625216 SH3RF3Q8TEJ3 882 aaPredicted RBP15.33■□□□□ 0.04
PNKP-217ENST00000625216 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.33■□□□□ 0.04
PNKP-217ENST00000625216 AATFQ9NY61 560 aaKnown RBP eCLIP15.33■□□□□ 0.04
PNKP-217ENST00000625216 PI4KBQ9UBF8 816 aa15.33■□□□□ 0.04
PNKP-217ENST00000625216 HERC5Q9UII4 1024 aaKnown RBP15.33■□□□□ 0.04
PNKP-217ENST00000625216 MYH2Q9UKX2 1941 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms