RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 SCYL3Q8IZE3 742 aa29.47■■■□□ 2.31
CPSF1-214ENST00000622776 ARHGAP45Q92619 1136 aa29.47■■■□□ 2.31
CPSF1-214ENST00000622776 PARK7Q99497 189 aaKnown RBP29.47■■■□□ 2.31
CPSF1-214ENST00000622776 PICK1Q9NRD5 415 aa29.47■■■□□ 2.31
CPSF1-214ENST00000622776 RFX7Q2KHR2 1363 aa29.47■■■□□ 2.31
CPSF1-214ENST00000622776 A0A1B0GUL7 405 aa29.46■■■□□ 2.31
CPSF1-214ENST00000622776 SRGAP3O43295 1099 aa29.46■■■□□ 2.31
CPSF1-214ENST00000622776 GNAI3P08754 354 aa29.46■■■□□ 2.31
CPSF1-214ENST00000622776 TFCP2Q12800 502 aa29.46■■■□□ 2.31
CPSF1-214ENST00000622776 XAGE2Q96GT9 111 aa29.46■■■□□ 2.31
CPSF1-214ENST00000622776 AKAP2Q9Y2D5 859 aa29.46■■■□□ 2.31
CPSF1-214ENST00000622776 ZHX2Q9Y6X8 837 aa29.46■■■□□ 2.31
CPSF1-214ENST00000622776 PTPRAP18433 802 aa29.45■■■□□ 2.31
CPSF1-214ENST00000622776 MAP3K10Q02779 954 aa29.45■■■□□ 2.31
CPSF1-214ENST00000622776 DDX4Q9NQI0 724 aaKnown RBP29.45■■■□□ 2.31
CPSF1-214ENST00000622776 DDTLA6NHG4 134 aaPredicted RBP29.44■■■□□ 2.3
CPSF1-214ENST00000622776 CYP2C8P10632 490 aa29.44■■■□□ 2.3
CPSF1-214ENST00000622776 BCRP11274 1271 aa29.44■■■□□ 2.3
CPSF1-214ENST00000622776 BTDP43251 543 aa29.44■■■□□ 2.3
CPSF1-214ENST00000622776 MTX1Q13505 466 aa29.44■■■□□ 2.3
CPSF1-214ENST00000622776 MVPQ14764 893 aaKnown RBP29.44■■■□□ 2.3
CPSF1-214ENST00000622776 MTFR1Q15390 333 aa29.44■■■□□ 2.3
CPSF1-214ENST00000622776 RAET1EQ8TD07 263 aa29.44■■■□□ 2.3
CPSF1-214ENST00000622776 DOCK2Q92608 1830 aa29.43■■■□□ 2.3
CPSF1-214ENST00000622776 A0A0G2JLL6 359 aaPredicted RBP29.43■■■□□ 2.3
CPSF1-214ENST00000622776 GRK4P32298 578 aa29.43■■■□□ 2.3
CPSF1-214ENST00000622776 FASTKD5Q7L8L6 764 aaKnown RBP29.43■■■□□ 2.3
CPSF1-214ENST00000622776 PRRT2Q7Z6L0 340 aaPredicted RBP29.43■■■□□ 2.3
CPSF1-214ENST00000622776 AFG3L2Q9Y4W6 797 aa29.43■■■□□ 2.3
CPSF1-214ENST00000622776 MROH7-TTC4A0A0A0MT08 1334 aa29.43■■■□□ 2.3
CPSF1-214ENST00000622776 MYPNQ86TC9 1320 aa29.43■■■□□ 2.3
CPSF1-214ENST00000622776 TRIOBPQ9H2D6 2365 aa29.42■■■□□ 2.3
CPSF1-214ENST00000622776 SLURP2P0DP57 97 aa29.42■■■□□ 2.3
CPSF1-214ENST00000622776 PICALMQ13492 652 aa29.42■■■□□ 2.3
CPSF1-214ENST00000622776 ERICH6Q7L0X2 663 aa29.42■■■□□ 2.3
CPSF1-214ENST00000622776 MECOMQ03112 1051 aa29.41■■■□□ 2.3
CPSF1-214ENST00000622776 NEUROD6Q96NK8 337 aa29.41■■■□□ 2.3
CPSF1-214ENST00000622776 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP29.41■■■□□ 2.3
CPSF1-214ENST00000622776 GPR75-ASB3A0A0A6YYF3 556 aa29.4■■■□□ 2.3
CPSF1-214ENST00000622776 CTNND1O60716 968 aaKnown RBP29.4■■■□□ 2.3
CPSF1-214ENST00000622776 FCGRTP55899 365 aa29.4■■■□□ 2.3
CPSF1-214ENST00000622776 GADL1Q6ZQY3 521 aa29.4■■■□□ 2.3
CPSF1-214ENST00000622776 RHBDL3P58872 404 aa29.39■■■□□ 2.3
CPSF1-214ENST00000622776 ZNF384Q8TF68 577 aa29.39■■■□□ 2.3
CPSF1-214ENST00000622776 SHISA4Q96DD7 197 aa29.39■■■□□ 2.3
CPSF1-214ENST00000622776 HMG20BQ9P0W2 317 aa29.39■■■□□ 2.3
CPSF1-214ENST00000622776 PRKCZQ05513 592 aa29.38■■■□□ 2.29
CPSF1-214ENST00000622776 SLC45A1Q9Y2W3 748 aa29.38■■■□□ 2.29
CPSF1-214ENST00000622776 BIN2Q9UBW5 565 aaPredicted RBP29.37■■■□□ 2.29
CPSF1-214ENST00000622776 CCER2I3L3R5 266 aa29.36■■■□□ 2.29
CPSF1-214ENST00000622776 IPO8O15397 1037 aaKnown RBP29.36■■■□□ 2.29
CPSF1-214ENST00000622776 NPM3O75607 178 aaKnown RBP29.36■■■□□ 2.29
CPSF1-214ENST00000622776 GORABQ5T7V8 394 aa29.36■■■□□ 2.29
CPSF1-214ENST00000622776 PI16Q6UXB8 463 aa29.36■■■□□ 2.29
CPSF1-214ENST00000622776 SPATA5Q8NB90 893 aa29.36■■■□□ 2.29
CPSF1-214ENST00000622776 NKX2-3Q8TAU0 364 aa29.36■■■□□ 2.29
CPSF1-214ENST00000622776 TRIM75PA6NK02 468 aa29.35■■■□□ 2.29
CPSF1-214ENST00000622776 TBC1D12O60347 775 aa29.35■■■□□ 2.29
CPSF1-214ENST00000622776 GNAI2P04899 355 aa29.35■■■□□ 2.29
CPSF1-214ENST00000622776 LDHCP07864 332 aa29.35■■■□□ 2.29
CPSF1-214ENST00000622776 CCL5P13501 91 aa29.35■■■□□ 2.29
CPSF1-214ENST00000622776 GSTO1P78417 241 aa29.35■■■□□ 2.29
CPSF1-214ENST00000622776 TBC1D9Q6ZT07 1266 aa29.35■■■□□ 2.29
CPSF1-214ENST00000622776 NSUN4Q96CB9 384 aaKnown RBP29.35■■■□□ 2.29
CPSF1-214ENST00000622776 FRMD4AQ9P2Q2 1039 aaPredicted RBP29.35■■■□□ 2.29
CPSF1-214ENST00000622776 GABRQQ9UN88 632 aa29.35■■■□□ 2.29
CPSF1-214ENST00000622776 COLQQ9Y215 455 aaPredicted RBP29.35■■■□□ 2.29
CPSF1-214ENST00000622776 H0YGN5 161 aa29.34■■■□□ 2.29
CPSF1-214ENST00000622776 MAP4K4O95819 1239 aaPredicted RBP29.34■■■□□ 2.29
CPSF1-214ENST00000622776 GJB1P08034 283 aa29.34■■■□□ 2.29
CPSF1-214ENST00000622776 TRIM27P14373 513 aa29.34■■■□□ 2.29
CPSF1-214ENST00000622776 UBXN2AP68543 259 aa29.34■■■□□ 2.29
CPSF1-214ENST00000622776 CCDC84Q86UT8 332 aaPredicted RBP29.34■■■□□ 2.29
CPSF1-214ENST00000622776 TNNQ9UQP3 1299 aa29.34■■■□□ 2.29
CPSF1-214ENST00000622776 DOCK1Q14185 1865 aa29.34■■■□□ 2.29
CPSF1-214ENST00000622776 PTPRFP10586 1907 aa29.33■■■□□ 2.29
CPSF1-214ENST00000622776 ARID4AP29374 1257 aaPredicted RBP29.33■■■□□ 2.29
CPSF1-214ENST00000622776 GJA8P48165 433 aa29.33■■■□□ 2.29
CPSF1-214ENST00000622776 G3BP1Q13283 466 aaKnown RBP eCLIP29.33■■■□□ 2.29
CPSF1-214ENST00000622776 SLAIN1Q8ND83 568 aa29.33■■■□□ 2.29
CPSF1-214ENST00000622776 RNF208Q9H0X6 261 aa29.33■■■□□ 2.29
CPSF1-214ENST00000622776 XPO5Q9HAV4 1204 aaKnown RBP eCLIP29.33■■■□□ 2.29
CPSF1-214ENST00000622776 MGAMO43451 1857 aa29.33■■■□□ 2.29
CPSF1-214ENST00000622776 PNMA6EA0A0J9YXQ4 647 aa29.32■■■□□ 2.28
CPSF1-214ENST00000622776 FXR1P51114 621 aaKnown RBP eCLIP29.32■■■□□ 2.28
CPSF1-214ENST00000622776 ATF7IPQ6VMQ6 1270 aa29.32■■■□□ 2.28
CPSF1-214ENST00000622776 SMCR8Q8TEV9 937 aaPredicted RBP29.32■■■□□ 2.28
CPSF1-214ENST00000622776 RAI14Q9P0K7 980 aa29.32■■■□□ 2.28
CPSF1-214ENST00000622776 PHIPQ8WWQ0 1821 aa29.31■■■□□ 2.28
CPSF1-214ENST00000622776 FAM196BA6NMK8 535 aa29.31■■■□□ 2.28
CPSF1-214ENST00000622776 FRAT1Q92837 279 aaPredicted RBP29.31■■■□□ 2.28
CPSF1-214ENST00000622776 AGTPBP1Q9UPW5 1226 aa29.31■■■□□ 2.28
CPSF1-214ENST00000622776 BCAR3O75815 825 aa29.3■■■□□ 2.28
CPSF1-214ENST00000622776 FLT3LGP49771 235 aa29.3■■■□□ 2.28
CPSF1-214ENST00000622776 OSBPL5Q9H0X9 879 aaPredicted RBP29.3■■■□□ 2.28
CPSF1-214ENST00000622776 ADCY3O60266 1144 aa29.29■■■□□ 2.28
CPSF1-214ENST00000622776 MCAMP43121 646 aa29.29■■■□□ 2.28
CPSF1-214ENST00000622776 UBE2Q1Q7Z7E8 422 aa29.29■■■□□ 2.28
CPSF1-214ENST00000622776 CLUAP1Q96AJ1 413 aa29.29■■■□□ 2.28
CPSF1-214ENST00000622776 TNPO2O14787 897 aaKnown RBP29.28■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms