RNA–Protein interactions for RNA: ENST00000622629.4

MSH6-215, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 4,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-215ENST00000622629 RPGRQ92834 1020 aaKnown RBP14.64□□□□□ -0.07
MSH6-215ENST00000622629 EIF3JO75822 258 aaKnown RBP14.63□□□□□ -0.07
MSH6-215ENST00000622629 DNA2P51530 1060 aa14.63□□□□□ -0.07
MSH6-215ENST00000622629 SDR42E1Q8WUS8 393 aa14.63□□□□□ -0.07
MSH6-215ENST00000622629 MAPK8IP1Q9UQF2 711 aa14.63□□□□□ -0.07
MSH6-215ENST00000622629 PATL2C9JE40 543 aaKnown RBP14.63□□□□□ -0.07
MSH6-215ENST00000622629 DPCR1Q3MIW9 517 aa14.63□□□□□ -0.07
MSH6-215ENST00000622629 VPS54Q9P1Q0 977 aa14.63□□□□□ -0.07
MSH6-215ENST00000622629 SHPRHQ149N8 1683 aa14.63□□□□□ -0.07
MSH6-215ENST00000622629 RPAP1Q9BWH6 1393 aaPredicted RBP14.63□□□□□ -0.07
MSH6-215ENST00000622629 SNAP23O00161 211 aa14.63□□□□□ -0.07
MSH6-215ENST00000622629 CIAO1O76071 339 aa14.63□□□□□ -0.07
MSH6-215ENST00000622629 USP21Q9UK80 565 aa14.63□□□□□ -0.07
MSH6-215ENST00000622629 TECPR2O15040 1411 aa14.63□□□□□ -0.07
MSH6-215ENST00000622629 USP32Q8NFA0 1604 aa14.63□□□□□ -0.07
MSH6-215ENST00000622629 SF3B2Q13435 895 aaKnown RBP14.62□□□□□ -0.07
MSH6-215ENST00000622629 ZNF827Q17R98 1081 aa14.62□□□□□ -0.07
MSH6-215ENST00000622629 CCDC96Q2M329 555 aa14.62□□□□□ -0.07
MSH6-215ENST00000622629 FKBP15Q5T1M5 1219 aa14.62□□□□□ -0.07
MSH6-215ENST00000622629 LRRC8AQ8IWT6 810 aa14.62□□□□□ -0.07
MSH6-215ENST00000622629 CCDC148Q8NFR7 591 aa14.62□□□□□ -0.07
MSH6-215ENST00000622629 BAG1Q99933 345 aaPredicted RBP14.62□□□□□ -0.07
MSH6-215ENST00000622629 SPATA31A3Q5VYP0 1347 aa14.62□□□□□ -0.07
MSH6-215ENST00000622629 MAP3K15Q6ZN16 1313 aa14.62□□□□□ -0.07
MSH6-215ENST00000622629 LDHCP07864 332 aa14.62□□□□□ -0.07
MSH6-215ENST00000622629 CCT6AP40227 531 aaKnown RBP14.62□□□□□ -0.07
MSH6-215ENST00000622629 FAM182BQ5T319 152 aa14.62□□□□□ -0.07
MSH6-215ENST00000622629 SPTY2D1Q68D10 685 aaPredicted RBP14.62□□□□□ -0.07
MSH6-215ENST00000622629 LEKR1Q6ZMV7 388 aa14.62□□□□□ -0.07
MSH6-215ENST00000622629 ZNF397Q8NF99 534 aaPredicted RBP14.62□□□□□ -0.07
MSH6-215ENST00000622629 RTEL1Q9NZ71 1219 aa14.62□□□□□ -0.07
MSH6-215ENST00000622629 CTDP1Q9Y5B0 961 aaPredicted RBP14.62□□□□□ -0.07
MSH6-215ENST00000622629 RTL9Q8NET4 1388 aa14.62□□□□□ -0.07
MSH6-215ENST00000622629 WDR17Q8IZU2 1322 aa14.62□□□□□ -0.07
MSH6-215ENST00000622629 SALL3Q9BXA9 1300 aa14.62□□□□□ -0.07
MSH6-215ENST00000622629 RFC4P35249 363 aa14.62□□□□□ -0.07
MSH6-215ENST00000622629 SPA17Q15506 151 aa14.62□□□□□ -0.07
MSH6-215ENST00000622629 ELF2Q15723 593 aa14.62□□□□□ -0.07
MSH6-215ENST00000622629 CCDC178Q5BJE1 867 aa14.62□□□□□ -0.07
MSH6-215ENST00000622629 TFCP2L1Q9NZI6 479 aa14.62□□□□□ -0.07
MSH6-215ENST00000622629 APOA5Q6Q788 366 aa14.62□□□□□ -0.07
MSH6-215ENST00000622629 WWC3Q9ULE0 1092 aa14.62□□□□□ -0.07
MSH6-215ENST00000622629 NBPF26B4DH59 902 aa14.61□□□□□ -0.07
MSH6-215ENST00000622629 CMA1P23946 247 aa14.61□□□□□ -0.07
MSH6-215ENST00000622629 PTPN21Q16825 1174 aa14.61□□□□□ -0.07
MSH6-215ENST00000622629 NBPF14Q5TI25 921 aa14.61□□□□□ -0.07
MSH6-215ENST00000622629 NBPF10Q6P3W6 841 aaKnown RBP14.61□□□□□ -0.07
MSH6-215ENST00000622629 NBPF15Q8N660 670 aa14.61□□□□□ -0.07
MSH6-215ENST00000622629 CCDC87Q9NVE4 849 aa14.61□□□□□ -0.07
MSH6-215ENST00000622629 MROH5Q6ZUA9 1318 aa14.61□□□□□ -0.07
MSH6-215ENST00000622629 CCDC175P0C221 793 aa14.61□□□□□ -0.07
MSH6-215ENST00000622629 TRIM21P19474 475 aaKnown RBP14.61□□□□□ -0.07
MSH6-215ENST00000622629 GYG1P46976 350 aa14.61□□□□□ -0.07
MSH6-215ENST00000622629 PARP10Q53GL7 1025 aa14.61□□□□□ -0.07
MSH6-215ENST00000622629 CACNA2D4Q7Z3S7 1137 aa14.61□□□□□ -0.07
MSH6-215ENST00000622629 IQUBQ8NA54 791 aa14.61□□□□□ -0.07
MSH6-215ENST00000622629 LINC00301Q8NCQ3 95 aa14.61□□□□□ -0.07
MSH6-215ENST00000622629 MRFAP1L1Q96HT8 127 aa14.61□□□□□ -0.07
MSH6-215ENST00000622629 TRERF1Q96PN7 1200 aa14.61□□□□□ -0.07
MSH6-215ENST00000622629 NCAPD2Q15021 1401 aa14.61□□□□□ -0.07
MSH6-215ENST00000622629 ZNF654Q8IZM8 581 aa14.61□□□□□ -0.07
MSH6-215ENST00000622629 SMARCC1Q92922 1105 aaPredicted RBP14.61□□□□□ -0.07
MSH6-215ENST00000622629 CARD10Q9BWT7 1032 aa14.61□□□□□ -0.07
MSH6-215ENST00000622629 AATFQ9NY61 560 aaKnown RBP eCLIP14.61□□□□□ -0.07
MSH6-215ENST00000622629 CALM1P0DP23 149 aa14.6□□□□□ -0.07
MSH6-215ENST00000622629 CALM2P0DP24 149 aa14.6□□□□□ -0.07
MSH6-215ENST00000622629 CALM3P0DP25 149 aa14.6□□□□□ -0.07
MSH6-215ENST00000622629 PIK3AP1Q6ZUJ8 805 aa14.6□□□□□ -0.07
MSH6-215ENST00000622629 SERTAD1Q9UHV2 236 aa14.6□□□□□ -0.07
MSH6-215ENST00000622629 POSTNQ15063 836 aa14.6□□□□□ -0.07
MSH6-215ENST00000622629 CTAGE1Q96RT6 745 aa14.6□□□□□ -0.07
MSH6-215ENST00000622629 FBXO3Q9UK99 471 aa14.6□□□□□ -0.07
MSH6-215ENST00000622629 CEMIPQ8WUJ3 1361 aa14.6□□□□□ -0.07
MSH6-215ENST00000622629 F8W031 263 aaPredicted RBP14.6□□□□□ -0.07
MSH6-215ENST00000622629 TPTE2Q6XPS3 522 aa14.6□□□□□ -0.07
MSH6-215ENST00000622629 STOX1Q6ZVD7 989 aa14.6□□□□□ -0.07
MSH6-215ENST00000622629 NOSTRINQ8IVI9 506 aa14.6□□□□□ -0.07
MSH6-215ENST00000622629 CRACR2BQ8N4Y2 399 aaPredicted RBP14.6□□□□□ -0.07
MSH6-215ENST00000622629 ERO1AQ96HE7 468 aa14.6□□□□□ -0.07
MSH6-215ENST00000622629 ZMYM6O95789 1325 aa14.6□□□□□ -0.07
MSH6-215ENST00000622629 USP42Q9H9J4 1324 aaKnown RBP14.6□□□□□ -0.07
MSH6-215ENST00000622629 GTF2F1P35269 517 aaKnown RBP eCLIP14.6□□□□□ -0.072e-7■■■■■ 27.6
MSH6-215ENST00000622629 ARID5BQ14865 1188 aa14.6□□□□□ -0.07
MSH6-215ENST00000622629 CALML4Q96GE6 196 aa14.6□□□□□ -0.07
MSH6-215ENST00000622629 SEC31BQ9NQW1 1179 aa14.6□□□□□ -0.07
MSH6-215ENST00000622629 ZNF215Q9UL58 517 aaPredicted RBP14.6□□□□□ -0.07
MSH6-215ENST00000622629 TDRD12Q587J7 1177 aaKnown RBP14.59□□□□□ -0.07
MSH6-215ENST00000622629 NLRP10Q86W26 655 aa14.59□□□□□ -0.07
MSH6-215ENST00000622629 KAZALD1Q96I82 304 aa14.59□□□□□ -0.07
MSH6-215ENST00000622629 VPS16Q9H269 839 aa14.59□□□□□ -0.07
MSH6-215ENST00000622629 CWC15Q9P013 229 aaKnown RBP14.59□□□□□ -0.07
MSH6-215ENST00000622629 IMPACTQ9P2X3 320 aa14.59□□□□□ -0.07
MSH6-215ENST00000622629 PPP1R1BQ9UD71 204 aaPredicted RBP14.59□□□□□ -0.07
MSH6-215ENST00000622629 C1orf167Q5SNV9 1468 aa14.59□□□□□ -0.07
MSH6-215ENST00000622629 NAPAP54920 295 aa14.59□□□□□ -0.07
MSH6-215ENST00000622629 MCM6Q14566 821 aa14.59□□□□□ -0.07
MSH6-215ENST00000622629 UBE3CQ15386 1083 aa14.59□□□□□ -0.07
MSH6-215ENST00000622629 TMEM266Q2M3C6 531 aa14.59□□□□□ -0.07
MSH6-215ENST00000622629 PIGBQ92521 554 aa14.59□□□□□ -0.07
MSH6-215ENST00000622629 PYM1Q9BRP8 204 aaKnown RBP14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms