RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 SYF2O95926 243 aaKnown RBP8.98□□□□□ -0.97
VPS11-209ENST00000622309 SERPINC1P01008 464 aa8.98□□□□□ -0.97
VPS11-209ENST00000622309 E2F5Q15329 346 aa8.98□□□□□ -0.97
VPS11-209ENST00000622309 TRIM74Q86UV6 250 aa8.98□□□□□ -0.97
VPS11-209ENST00000622309 TRIM73Q86UV7 250 aa8.98□□□□□ -0.97
VPS11-209ENST00000622309 CDC23Q9UJX2 597 aa8.98□□□□□ -0.97
VPS11-209ENST00000622309 COL16A1Q07092 1604 aaPredicted RBP8.98□□□□□ -0.97
VPS11-209ENST00000622309 CTAGE15A4D2H0 777 aa8.97□□□□□ -0.97
VPS11-209ENST00000622309 WASLO00401 505 aaPredicted RBP8.97□□□□□ -0.97
VPS11-209ENST00000622309 PRPF6O94906 941 aaKnown RBP8.97□□□□□ -0.97
VPS11-209ENST00000622309 CTAGE8P0CG41 777 aa8.97□□□□□ -0.97
VPS11-209ENST00000622309 SETSIPP0DME0 302 aa8.97□□□□□ -0.97
VPS11-209ENST00000622309 AARSP49588 968 aaKnown RBP eCLIP8.97□□□□□ -0.97
VPS11-209ENST00000622309 FANCCQ00597 558 aa8.97□□□□□ -0.97
VPS11-209ENST00000622309 STIM1Q13586 685 aa8.97□□□□□ -0.97
VPS11-209ENST00000622309 ME3Q16798 604 aa8.97□□□□□ -0.97
VPS11-209ENST00000622309 CFAP100Q494V2 611 aa8.97□□□□□ -0.97
VPS11-209ENST00000622309 RCSD1Q6JBY9 416 aa8.97□□□□□ -0.97
VPS11-209ENST00000622309 CTAGE6Q86UF2 777 aa8.97□□□□□ -0.97
VPS11-209ENST00000622309 CTAGE4Q8IX94 777 aa8.97□□□□□ -0.97
VPS11-209ENST00000622309 PDILTQ8N807 584 aa8.97□□□□□ -0.97
VPS11-209ENST00000622309 SPDYE1Q8NFV5 336 aaPredicted RBP8.97□□□□□ -0.97
VPS11-209ENST00000622309 KIFC2Q96AC6 838 aa8.97□□□□□ -0.97
VPS11-209ENST00000622309 NUDT16Q96DE0 195 aaKnown RBP8.97□□□□□ -0.97
VPS11-209ENST00000622309 GOLGA6L7A0A1B0GV03 622 aa8.97□□□□□ -0.97
VPS11-209ENST00000622309 EIF3HO15372 352 aaKnown RBP eCLIP8.97□□□□□ -0.97
VPS11-209ENST00000622309 NEFHP12036 1026 aa8.97□□□□□ -0.97
VPS11-209ENST00000622309 LMOD1P29536 600 aaPredicted RBP8.97□□□□□ -0.97
VPS11-209ENST00000622309 HDGFP51858 240 aaKnown RBP8.97□□□□□ -0.97
VPS11-209ENST00000622309 NFXL1Q6ZNB6 911 aa8.97□□□□□ -0.97
VPS11-209ENST00000622309 XAGE2Q96GT9 111 aa8.97□□□□□ -0.97
VPS11-209ENST00000622309 ATP6V0A4Q9HBG4 840 aa8.97□□□□□ -0.97
VPS11-209ENST00000622309 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.97□□□□□ -0.972e-6■■■■■ 92.6
VPS11-209ENST00000622309 BATF3Q9NR55 127 aa8.97□□□□□ -0.97
VPS11-209ENST00000622309 H3BQV1 296 aa8.96□□□□□ -0.97
VPS11-209ENST00000622309 SSBP05455 408 aaKnown RBP eCLIP8.96□□□□□ -0.97
VPS11-209ENST00000622309 SLC8A1P32418 973 aa8.96□□□□□ -0.97
VPS11-209ENST00000622309 UBASH3AP57075 661 aa8.96□□□□□ -0.97
VPS11-209ENST00000622309 IFFO2Q5TF58 517 aa8.96□□□□□ -0.97
VPS11-209ENST00000622309 ANKRD13AQ8IZ07 590 aa8.96□□□□□ -0.97
VPS11-209ENST00000622309 PPP1R12BO60237 982 aaPredicted RBP8.96□□□□□ -0.97
VPS11-209ENST00000622309 AKAP17AQ02040 695 aaKnown RBP8.96□□□□□ -0.97
VPS11-209ENST00000622309 GOLGA8FQ08AF8 430 aa8.96□□□□□ -0.97
VPS11-209ENST00000622309 GOLGA8DPQ0D2H9 430 aa8.96□□□□□ -0.97
VPS11-209ENST00000622309 TUBB2AQ13885 445 aa8.96□□□□□ -0.97
VPS11-209ENST00000622309 KCNB1Q14721 858 aa8.96□□□□□ -0.97
VPS11-209ENST00000622309 LARP1Q6PKG0 1096 aaKnown RBP8.96□□□□□ -0.97
VPS11-209ENST00000622309 RIN2Q8WYP3 895 aaPredicted RBP8.96□□□□□ -0.97
VPS11-209ENST00000622309 TUBB2BQ9BVA1 445 aa8.96□□□□□ -0.97
VPS11-209ENST00000622309 CHCHD3Q9NX63 227 aaKnown RBP8.96□□□□□ -0.97
VPS11-209ENST00000622309 ATXN2Q99700 1313 aaKnown RBP8.96□□□□□ -0.97
VPS11-209ENST00000622309 ATP10DQ9P241 1426 aa8.96□□□□□ -0.97
VPS11-209ENST00000622309 LRP6O75581 1613 aa8.96□□□□□ -0.98
VPS11-209ENST00000622309 CD163L1Q9NR16 1453 aa8.96□□□□□ -0.98
VPS11-209ENST00000622309 KIF5CO60282 957 aa8.96□□□□□ -0.98
VPS11-209ENST00000622309 ZNF202O95125 648 aa8.96□□□□□ -0.98
VPS11-209ENST00000622309 KRT24Q2M2I5 525 aa8.96□□□□□ -0.98
VPS11-209ENST00000622309 LMBR1Q8WVP7 490 aa8.96□□□□□ -0.98
VPS11-209ENST00000622309 CCDC114Q96M63 670 aa8.96□□□□□ -0.98
VPS11-209ENST00000622309 MEIS3Q99687 375 aa8.96□□□□□ -0.98
VPS11-209ENST00000622309 EHD4Q9H223 541 aa8.96□□□□□ -0.98
VPS11-209ENST00000622309 HOMER3Q9NSC5 361 aa8.96□□□□□ -0.98
VPS11-209ENST00000622309 GABBR1Q9UBS5 961 aa8.96□□□□□ -0.98
VPS11-209ENST00000622309 IQSEC3Q9UPP2 1182 aaPredicted RBP8.96□□□□□ -0.98
VPS11-209ENST00000622309 AHDC1Q5TGY3 1603 aaPredicted RBP8.95□□□□□ -0.98
VPS11-209ENST00000622309 MCM3P25205 808 aa8.95□□□□□ -0.98
VPS11-209ENST00000622309 UNC5CLQ8IV45 518 aa8.95□□□□□ -0.98
VPS11-209ENST00000622309 PARP9Q8IXQ6 854 aa8.95□□□□□ -0.98
VPS11-209ENST00000622309 C3orf20Q8ND61 904 aa8.95□□□□□ -0.98
VPS11-209ENST00000622309 CCDC148Q8NFR7 591 aa8.95□□□□□ -0.98
VPS11-209ENST00000622309 ZCRB1Q8TBF4 217 aaKnown RBP8.95□□□□□ -0.98
VPS11-209ENST00000622309 NUP133Q8WUM0 1156 aa8.95□□□□□ -0.98
VPS11-209ENST00000622309 RBM33Q96EV2 1170 aaKnown RBP8.95□□□□□ -0.98
VPS11-209ENST00000622309 SLC40A1Q9NP59 571 aa8.95□□□□□ -0.98
VPS11-209ENST00000622309 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.95□□□□□ -0.98
VPS11-209ENST00000622309 GGCXP38435 758 aa8.95□□□□□ -0.98
VPS11-209ENST00000622309 DCTN1Q14203 1278 aa8.95□□□□□ -0.98
VPS11-209ENST00000622309 LMOD2Q6P5Q4 547 aa8.95□□□□□ -0.98
VPS11-209ENST00000622309 DRAXINQ8NBI3 349 aaPredicted RBP8.95□□□□□ -0.98
VPS11-209ENST00000622309 IL25Q9H293 177 aa8.95□□□□□ -0.98
VPS11-209ENST00000622309 VCPKMTQ9H867 229 aa8.95□□□□□ -0.98
VPS11-209ENST00000622309 TPCN1Q9ULQ1 816 aa8.95□□□□□ -0.98
VPS11-209ENST00000622309 NSD2O96028 1365 aa8.95□□□□□ -0.98
VPS11-209ENST00000622309 PDHBP11177 359 aa8.95□□□□□ -0.98
VPS11-209ENST00000622309 FAM160A1Q05DH4 1040 aa8.95□□□□□ -0.98
VPS11-209ENST00000622309 SLC5A9Q2M3M2 681 aa8.95□□□□□ -0.98
VPS11-209ENST00000622309 FILIP1LQ4L180 1135 aa8.95□□□□□ -0.98
VPS11-209ENST00000622309 CAPRIN2Q6IMN6 1127 aaKnown RBP8.95□□□□□ -0.98
VPS11-209ENST00000622309 MAMSTRQ6ZN01 415 aa8.95□□□□□ -0.98
VPS11-209ENST00000622309 FSIP1Q8NA03 581 aa8.95□□□□□ -0.98
VPS11-209ENST00000622309 TCP11Q8WWU5 503 aa8.95□□□□□ -0.98
VPS11-209ENST00000622309 HPCAL4Q9UM19 191 aa8.95□□□□□ -0.98
VPS11-209ENST00000622309 A6NNZ2 444 aa8.94□□□□□ -0.98
VPS11-209ENST00000622309 GIGYF1O75420 1035 aaPredicted RBP8.94□□□□□ -0.98
VPS11-209ENST00000622309 RAB27AP51159 221 aa8.94□□□□□ -0.98
VPS11-209ENST00000622309 PLCB4Q15147 1175 aa8.94□□□□□ -0.98
VPS11-209ENST00000622309 ZRSR2Q15696 482 aaKnown RBP8.94□□□□□ -0.98
VPS11-209ENST00000622309 DPCR1Q3MIW9 517 aa8.94□□□□□ -0.98
VPS11-209ENST00000622309 TUBB8Q3ZCM7 444 aa8.94□□□□□ -0.98
VPS11-209ENST00000622309 DDX54Q8TDD1 881 aaKnown RBP8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms