RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 SFPQP23246 707 aaKnown RBP eCLIP14.92□□□□□ -0.02
CCDC88A-214ENST00000621814 CFAP100Q494V2 611 aa14.92□□□□□ -0.02
CCDC88A-214ENST00000621814 JMYQ8N9B5 988 aa14.92□□□□□ -0.02
CCDC88A-214ENST00000621814 NIP7Q9Y221 180 aaKnown RBP eCLIP14.92□□□□□ -0.02
CCDC88A-214ENST00000621814 PAXBP1Q9Y5B6 917 aa14.92□□□□□ -0.02
CCDC88A-214ENST00000621814 MROH5Q6ZUA9 1318 aa14.92□□□□□ -0.02
CCDC88A-214ENST00000621814 ERICH2A1L162 156 aa14.91□□□□□ -0.02
CCDC88A-214ENST00000621814 GSG1L2A8MUP6 293 aa14.91□□□□□ -0.02
CCDC88A-214ENST00000621814 KCNQ4P56696 695 aa14.91□□□□□ -0.02
CCDC88A-214ENST00000621814 GRIN1Q05586 938 aa14.91□□□□□ -0.02
CCDC88A-214ENST00000621814 NR5A1Q13285 461 aa14.91□□□□□ -0.02
CCDC88A-214ENST00000621814 NTRK3Q16288 839 aa14.91□□□□□ -0.02
CCDC88A-214ENST00000621814 AKNAD1Q5T1N1 836 aa14.91□□□□□ -0.02
CCDC88A-214ENST00000621814 BICDL1Q6ZP65 573 aa14.91□□□□□ -0.02
CCDC88A-214ENST00000621814 NEMFO60524 1076 aa14.91□□□□□ -0.02
CCDC88A-214ENST00000621814 IGHMBP2P38935 993 aaKnown RBP14.91□□□□□ -0.02
CCDC88A-214ENST00000621814 FANCCQ00597 558 aa14.91□□□□□ -0.02
CCDC88A-214ENST00000621814 WTAPQ15007 396 aa14.91□□□□□ -0.02
CCDC88A-214ENST00000621814 SMIM5Q71RC9 77 aa14.91□□□□□ -0.02
CCDC88A-214ENST00000621814 CCAR2Q8N163 923 aaKnown RBP14.91□□□□□ -0.02
CCDC88A-214ENST00000621814 UTP14AQ9BVJ6 771 aaKnown RBP14.91□□□□□ -0.02
CCDC88A-214ENST00000621814 RAI14Q9P0K7 980 aa14.91□□□□□ -0.02
CCDC88A-214ENST00000621814 PRDM1O75626 825 aa14.91□□□□□ -0.02
CCDC88A-214ENST00000621814 SAFBQ15424 915 aaKnown RBP eCLIP14.91□□□□□ -0.02
CCDC88A-214ENST00000621814 ARMCX5Q6P1M9 558 aa14.91□□□□□ -0.02
CCDC88A-214ENST00000621814 DIS3L2Q8IYB7 885 aaKnown RBP14.91□□□□□ -0.02
CCDC88A-214ENST00000621814 DPF2Q92785 391 aa14.91□□□□□ -0.02
CCDC88A-214ENST00000621814 NACAP1Q9BZK3 213 aa14.91□□□□□ -0.02
CCDC88A-214ENST00000621814 KCNH3Q9ULD8 1083 aa14.91□□□□□ -0.02
CCDC88A-214ENST00000621814 CYP7A1P22680 504 aa14.9□□□□□ -0.02
CCDC88A-214ENST00000621814 IL6STP40189 918 aaPredicted RBP14.9□□□□□ -0.02
CCDC88A-214ENST00000621814 UBASH3AP57075 661 aa14.9□□□□□ -0.02
CCDC88A-214ENST00000621814 RBM6P78332 1123 aaKnown RBP14.9□□□□□ -0.02
CCDC88A-214ENST00000621814 PTPAQ15257 358 aa14.9□□□□□ -0.02
CCDC88A-214ENST00000621814 SLC4A8Q2Y0W8 1093 aa14.9□□□□□ -0.02
CCDC88A-214ENST00000621814 GRAMD1CQ8IYS0 662 aa14.9□□□□□ -0.02
CCDC88A-214ENST00000621814 ZNF34Q8IZ26 560 aa14.9□□□□□ -0.02
CCDC88A-214ENST00000621814 CTIFO43310 598 aaKnown RBP14.9□□□□□ -0.02
CCDC88A-214ENST00000621814 IGSF3O75054 1194 aa14.9□□□□□ -0.02
CCDC88A-214ENST00000621814 FGFR2P21802 821 aa14.9□□□□□ -0.02
CCDC88A-214ENST00000621814 GYG1P46976 350 aa14.9□□□□□ -0.02
CCDC88A-214ENST00000621814 NCAPHQ15003 741 aa14.9□□□□□ -0.02
CCDC88A-214ENST00000621814 RTN1Q16799 776 aa14.9□□□□□ -0.02
CCDC88A-214ENST00000621814 ZNF827Q17R98 1081 aa14.9□□□□□ -0.02
CCDC88A-214ENST00000621814 TRIM22Q8IYM9 498 aa14.9□□□□□ -0.02
CCDC88A-214ENST00000621814 MAP3K14Q99558 947 aa14.9□□□□□ -0.02
CCDC88A-214ENST00000621814 ZNF215Q9UL58 517 aaPredicted RBP14.9□□□□□ -0.02
CCDC88A-214ENST00000621814 UBR2Q8IWV8 1755 aa14.89□□□□□ -0.03
CCDC88A-214ENST00000621814 CYP2D7A0A087X1C5 515 aa14.89□□□□□ -0.03
CCDC88A-214ENST00000621814 CRKLP46109 303 aaKnown RBP14.89□□□□□ -0.03
CCDC88A-214ENST00000621814 GSDMDP57764 484 aa14.89□□□□□ -0.03
CCDC88A-214ENST00000621814 SART3Q15020 963 aaKnown RBP14.89□□□□□ -0.03
CCDC88A-214ENST00000621814 OLFM4Q6UX06 510 aa14.89□□□□□ -0.03
CCDC88A-214ENST00000621814 HOMER1Q86YM7 354 aa14.89□□□□□ -0.03
CCDC88A-214ENST00000621814 FAM177A1Q8N128 213 aaPredicted RBP14.89□□□□□ -0.03
CCDC88A-214ENST00000621814 ZNF512BQ96KM6 892 aaPredicted RBP14.89□□□□□ -0.03
CCDC88A-214ENST00000621814 PCDHA5Q9Y5H7 936 aa14.89□□□□□ -0.03
CCDC88A-214ENST00000621814 WDR19Q8NEZ3 1342 aa14.89□□□□□ -0.03
CCDC88A-214ENST00000621814 FOXP4Q8IVH2 680 aaPredicted RBP14.89□□□□□ -0.03
CCDC88A-214ENST00000621814 UBAC1Q9BSL1 405 aa14.89□□□□□ -0.03
CCDC88A-214ENST00000621814 FANCLQ9NW38 375 aa14.89□□□□□ -0.03
CCDC88A-214ENST00000621814 ABCC12Q96J65 1359 aa14.89□□□□□ -0.03
CCDC88A-214ENST00000621814 POLR2DO15514 142 aaKnown RBP14.89□□□□□ -0.03
CCDC88A-214ENST00000621814 CHRNDQ07001 517 aa14.89□□□□□ -0.03
CCDC88A-214ENST00000621814 ADGRA1Q86SQ6 560 aa14.89□□□□□ -0.03
CCDC88A-214ENST00000621814 METTL16Q86W50 562 aaKnown RBP14.89□□□□□ -0.03
CCDC88A-214ENST00000621814 NOSTRINQ8IVI9 506 aa14.89□□□□□ -0.03
CCDC88A-214ENST00000621814 OXER1Q8TDS5 423 aa14.89□□□□□ -0.03
CCDC88A-214ENST00000621814 KRT23Q9C075 422 aa14.89□□□□□ -0.03
CCDC88A-214ENST00000621814 CABP5Q9NP86 173 aa14.89□□□□□ -0.03
CCDC88A-214ENST00000621814 SYT10Q6XYQ8 523 aa14.88□□□□□ -0.03
CCDC88A-214ENST00000621814 BCL9O00512 1426 aa14.88□□□□□ -0.03
CCDC88A-214ENST00000621814 ERVV-1B6SEH8 477 aa14.88□□□□□ -0.03
CCDC88A-214ENST00000621814 CCDC152Q4G0S7 254 aa14.88□□□□□ -0.03
CCDC88A-214ENST00000621814 E4F1Q66K89 784 aaPredicted RBP14.88□□□□□ -0.03
CCDC88A-214ENST00000621814 SGMS1Q86VZ5 419 aa14.88□□□□□ -0.03
CCDC88A-214ENST00000621814 KRI1Q8N9T8 703 aaKnown RBP14.88□□□□□ -0.03
CCDC88A-214ENST00000621814 ANKRD7Q92527 254 aa14.88□□□□□ -0.03
CCDC88A-214ENST00000621814 TMX1Q9H3N1 280 aa14.88□□□□□ -0.03
CCDC88A-214ENST00000621814 PCDHB6Q9Y5E3 794 aa14.88□□□□□ -0.03
CCDC88A-214ENST00000621814 TMEM232C9JQI7 657 aa14.87□□□□□ -0.03
CCDC88A-214ENST00000621814 PPP6R2O75170 966 aa14.87□□□□□ -0.03
CCDC88A-214ENST00000621814 FMNL1O95466 1100 aaPredicted RBP14.87□□□□□ -0.03
CCDC88A-214ENST00000621814 CDK11BP21127 795 aaKnown RBP14.87□□□□□ -0.03
CCDC88A-214ENST00000621814 TRMT44Q8IYL2 757 aaKnown RBP14.87□□□□□ -0.03
CCDC88A-214ENST00000621814 KIF18AQ8NI77 898 aa14.87□□□□□ -0.03
CCDC88A-214ENST00000621814 CNNM2Q9H8M5 875 aa14.87□□□□□ -0.03
CCDC88A-214ENST00000621814 JAG2Q9Y219 1238 aa14.87□□□□□ -0.03
CCDC88A-214ENST00000621814 RESP18Q5W5W9 173 aa14.87□□□□□ -0.03
CCDC88A-214ENST00000621814 KRBA2Q6ZNG9 492 aa14.87□□□□□ -0.03
CCDC88A-214ENST00000621814 CCDC24Q8N4L8 307 aa14.87□□□□□ -0.03
CCDC88A-214ENST00000621814 CCDC87Q9NVE4 849 aa14.87□□□□□ -0.03
CCDC88A-214ENST00000621814 TOGARAM1Q9Y4F4 1720 aa14.87□□□□□ -0.03
CCDC88A-214ENST00000621814 GTF2E1P29083 439 aaPredicted RBP14.86□□□□□ -0.03
CCDC88A-214ENST00000621814 LIFRP42702 1097 aa14.86□□□□□ -0.03
CCDC88A-214ENST00000621814 TOB1P50616 345 aaPredicted RBP14.86□□□□□ -0.03
CCDC88A-214ENST00000621814 MYL5Q02045 173 aa14.86□□□□□ -0.03
CCDC88A-214ENST00000621814 PDE4BQ07343 736 aa14.86□□□□□ -0.03
CCDC88A-214ENST00000621814 INTS5Q6P9B9 1019 aaKnown RBP14.86□□□□□ -0.03
CCDC88A-214ENST00000621814 NYAP1Q6ZVC0 841 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms