RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 DDX11L8A8MPP1 907 aa12.34□□□□□ -0.43
VPS11-208ENST00000621676 TFAP4Q01664 338 aa12.34□□□□□ -0.43
VPS11-208ENST00000621676 NFIAQ12857 509 aa12.34□□□□□ -0.43
VPS11-208ENST00000621676 SF3A1Q15459 793 aaKnown RBP12.34□□□□□ -0.43
VPS11-208ENST00000621676 SLC10A5Q5PT55 438 aa12.34□□□□□ -0.43
VPS11-208ENST00000621676 AKNAD1Q5T1N1 836 aa12.34□□□□□ -0.43
VPS11-208ENST00000621676 FBXO33Q7Z6M2 555 aa12.34□□□□□ -0.43
VPS11-208ENST00000621676 CWC22Q9HCG8 908 aaKnown RBP12.34□□□□□ -0.43
VPS11-208ENST00000621676 GJA3Q9Y6H8 435 aa12.34□□□□□ -0.43
VPS11-208ENST00000621676 WDR33Q9C0J8 1336 aaKnown RBP12.34□□□□□ -0.43
VPS11-208ENST00000621676 BRD1O95696 1058 aa12.33□□□□□ -0.44
VPS11-208ENST00000621676 DPEP1P16444 411 aa12.33□□□□□ -0.44
VPS11-208ENST00000621676 WTAPQ15007 396 aa12.33□□□□□ -0.44
VPS11-208ENST00000621676 DLK2Q6UY11 383 aa12.33□□□□□ -0.44
VPS11-208ENST00000621676 ZBTB43O43298 467 aa12.33□□□□□ -0.44
VPS11-208ENST00000621676 SNAP25P60880 206 aa12.33□□□□□ -0.44
VPS11-208ENST00000621676 GTF3C6Q969F1 213 aa12.33□□□□□ -0.44
VPS11-208ENST00000621676 DCP1AQ9NPI6 582 aaPredicted RBP12.33□□□□□ -0.44
VPS11-208ENST00000621676 TCP10L2B9ZVM9 353 aa12.32□□□□□ -0.44
VPS11-208ENST00000621676 DDIT3P35638 169 aa12.32□□□□□ -0.44
VPS11-208ENST00000621676 ME1P48163 572 aa12.32□□□□□ -0.44
VPS11-208ENST00000621676 CUL4AQ13619 759 aa12.32□□□□□ -0.44
VPS11-208ENST00000621676 CTR9Q6PD62 1173 aa12.32□□□□□ -0.44
VPS11-208ENST00000621676 MIGA2Q7L4E1 593 aa12.32□□□□□ -0.44
VPS11-208ENST00000621676 TRMT1LQ7Z2T5 733 aaKnown RBP12.32□□□□□ -0.44
VPS11-208ENST00000621676 C8orf76Q96K31 380 aa12.32□□□□□ -0.44
VPS11-208ENST00000621676 V9GY48 417 aaPredicted RBP12.32□□□□□ -0.44
VPS11-208ENST00000621676 TNKSO95271 1327 aa12.32□□□□□ -0.44
VPS11-208ENST00000621676 TAL1P17542 331 aaPredicted RBP12.32□□□□□ -0.44
VPS11-208ENST00000621676 LARGE2Q8N3Y3 721 aa12.32□□□□□ -0.44
VPS11-208ENST00000621676 CERS5Q8N5B7 392 aa12.32□□□□□ -0.44
VPS11-208ENST00000621676 NSUN7Q8NE18 718 aaKnown RBP12.32□□□□□ -0.44
VPS11-208ENST00000621676 UBA5Q9GZZ9 404 aa12.32□□□□□ -0.44
VPS11-208ENST00000621676 TDRD3Q9H7E2 651 aaKnown RBP12.32□□□□□ -0.44
VPS11-208ENST00000621676 VPS54Q9P1Q0 977 aa12.32□□□□□ -0.44
VPS11-208ENST00000621676 PDILTQ8N807 584 aa12.32□□□□□ -0.44
VPS11-208ENST00000621676 AKT1S1Q96B36 256 aa12.32□□□□□ -0.44
VPS11-208ENST00000621676 SPATA32Q96LK8 384 aa12.32□□□□□ -0.44
VPS11-208ENST00000621676 CRNKL1Q9BZJ0 848 aaKnown RBP12.32□□□□□ -0.44
VPS11-208ENST00000621676 FBXO3Q9UK99 471 aa12.32□□□□□ -0.44
VPS11-208ENST00000621676 ANGEL1Q9UNK9 670 aaKnown RBP12.32□□□□□ -0.44
VPS11-208ENST00000621676 COL1A1P02452 1464 aaPredicted RBP12.31□□□□□ -0.44
VPS11-208ENST00000621676 EIF5BO60841 1220 aaKnown RBP12.31□□□□□ -0.44
VPS11-208ENST00000621676 PLEKHA8P1O95397 391 aa12.31□□□□□ -0.44
VPS11-208ENST00000621676 ANKRD1Q15327 319 aa12.31□□□□□ -0.44
VPS11-208ENST00000621676 IFIT1BQ5T764 474 aaKnown RBP12.31□□□□□ -0.44
VPS11-208ENST00000621676 LRRC47Q8N1G4 583 aaKnown RBP12.31□□□□□ -0.44
VPS11-208ENST00000621676 USP40Q9NVE5 1235 aa12.31□□□□□ -0.44
VPS11-208ENST00000621676 NR5A1Q13285 461 aa12.31□□□□□ -0.44
VPS11-208ENST00000621676 HSP90AA4PQ58FG1 418 aa12.31□□□□□ -0.44
VPS11-208ENST00000621676 NOM1Q5C9Z4 860 aaKnown RBP12.31□□□□□ -0.44
VPS11-208ENST00000621676 RASGRP4Q8TDF6 673 aa12.31□□□□□ -0.44
VPS11-208ENST00000621676 ZFP91Q96JP5 570 aaPredicted RBP12.31□□□□□ -0.44
VPS11-208ENST00000621676 ZSCAN31Q96LW9 406 aaPredicted RBP12.31□□□□□ -0.44
VPS11-208ENST00000621676 RIOK1Q9BRS2 568 aaKnown RBP12.31□□□□□ -0.44
VPS11-208ENST00000621676 ALG1Q9BT22 464 aa12.31□□□□□ -0.44
VPS11-208ENST00000621676 BRIP1Q9BX63 1249 aa12.31□□□□□ -0.44
VPS11-208ENST00000621676 BIN1O00499 593 aa12.31□□□□□ -0.44
VPS11-208ENST00000621676 APOA5Q6Q788 366 aa12.31□□□□□ -0.44
VPS11-208ENST00000621676 TTC6Q86TZ1 520 aa12.31□□□□□ -0.44
VPS11-208ENST00000621676 CDAN1Q8IWY9 1227 aa12.31□□□□□ -0.44
VPS11-208ENST00000621676 MB21D2Q8IYB1 491 aaPredicted RBP12.31□□□□□ -0.44
VPS11-208ENST00000621676 GPKOWQ92917 476 aaPredicted RBP eCLIP12.31□□□□□ -0.44
VPS11-208ENST00000621676 ABCC6O95255 1503 aa12.3□□□□□ -0.44
VPS11-208ENST00000621676 FRMPD2Q68DX3 1309 aaPredicted RBP12.3□□□□□ -0.44
VPS11-208ENST00000621676 FAM205CA6NFA0 338 aa12.3□□□□□ -0.44
VPS11-208ENST00000621676 ZNF444Q8N0Y2 327 aaPredicted RBP12.3□□□□□ -0.44
VPS11-208ENST00000621676 SPICE1Q8N0Z3 855 aa12.3□□□□□ -0.44
VPS11-208ENST00000621676 SH2B1Q9NRF2 756 aaPredicted RBP12.3□□□□□ -0.44
VPS11-208ENST00000621676 PLSCR1O15162 318 aa12.3□□□□□ -0.44
VPS11-208ENST00000621676 GDF11O95390 407 aa12.3□□□□□ -0.44
VPS11-208ENST00000621676 TSPY3P0CV98 308 aa12.3□□□□□ -0.44
VPS11-208ENST00000621676 TSPY8P0CW00 308 aa12.3□□□□□ -0.44
VPS11-208ENST00000621676 FDPSP14324 419 aaKnown RBP12.3□□□□□ -0.44
VPS11-208ENST00000621676 LIG1P18858 919 aa12.3□□□□□ -0.44
VPS11-208ENST00000621676 IARSP41252 1262 aaKnown RBP12.3□□□□□ -0.44
VPS11-208ENST00000621676 EXOSC10Q01780 885 aaKnown RBP12.3□□□□□ -0.44
VPS11-208ENST00000621676 ILDR1Q86SU0 546 aaPredicted RBP12.3□□□□□ -0.44
VPS11-208ENST00000621676 CAMKK2Q96RR4 588 aa12.3□□□□□ -0.44
VPS11-208ENST00000621676 RPAP1Q9BWH6 1393 aaPredicted RBP12.3□□□□□ -0.44
VPS11-208ENST00000621676 BBOX1O75936 387 aa12.29□□□□□ -0.44
VPS11-208ENST00000621676 IKQ13123 557 aaPredicted RBP12.29□□□□□ -0.44
VPS11-208ENST00000621676 TM6SF1Q9BZW5 370 aa12.29□□□□□ -0.44
VPS11-208ENST00000621676 ADAMTS7Q9UKP4 1686 aa12.29□□□□□ -0.44
VPS11-208ENST00000621676 BTBD18B2RXH4 712 aa12.29□□□□□ -0.44
VPS11-208ENST00000621676 PDE6BP35913 854 aa12.29□□□□□ -0.44
VPS11-208ENST00000621676 AKAP17AQ02040 695 aaKnown RBP12.29□□□□□ -0.44
VPS11-208ENST00000621676 USP28Q96RU2 1077 aa12.29□□□□□ -0.44
VPS11-208ENST00000621676 CIZ1Q9ULV3 898 aaPredicted RBP12.29□□□□□ -0.44
VPS11-208ENST00000621676 XRCC6P12956 609 aaKnown RBP eCLIP12.29□□□□□ -0.44
VPS11-208ENST00000621676 ADRA2BP18089 450 aa12.29□□□□□ -0.44
VPS11-208ENST00000621676 SLC16A2P36021 539 aa12.29□□□□□ -0.44
VPS11-208ENST00000621676 SART3Q15020 963 aaKnown RBP12.29□□□□□ -0.44
VPS11-208ENST00000621676 USP17L2Q6R6M4 530 aa12.29□□□□□ -0.44
VPS11-208ENST00000621676 NBPF11Q86T75 865 aa12.29□□□□□ -0.44
VPS11-208ENST00000621676 CREBRFQ8IUR6 639 aa12.29□□□□□ -0.44
VPS11-208ENST00000621676 STAG2Q8N3U4 1231 aa12.29□□□□□ -0.44
VPS11-208ENST00000621676 MASTLQ96GX5 879 aa12.29□□□□□ -0.44
VPS11-208ENST00000621676 HPS5Q9UPZ3 1129 aa12.29□□□□□ -0.44
VPS11-208ENST00000621676 BTAF1O14981 1849 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms