RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 CLASRPQ8N2M8 674 aaKnown RBP11.64□□□□□ -0.55
VPS39-214ENST00000614932 LINS1Q8NG48 757 aa11.64□□□□□ -0.55
VPS39-214ENST00000614932 CCDC97Q96F63 343 aaPredicted RBP11.64□□□□□ -0.55
VPS39-214ENST00000614932 MPHOSPH8Q99549 860 aa11.64□□□□□ -0.55
VPS39-214ENST00000614932 CLSTN2Q9H4D0 955 aa11.64□□□□□ -0.55
VPS39-214ENST00000614932 LMO7Q8WWI1 1683 aa11.64□□□□□ -0.55
VPS39-214ENST00000614932 UBE3BQ7Z3V4 1068 aa11.64□□□□□ -0.55
VPS39-214ENST00000614932 SLAIN2Q9P270 581 aa11.64□□□□□ -0.55
VPS39-214ENST00000614932 ZNF232Q9UNY5 417 aa11.64□□□□□ -0.55
VPS39-214ENST00000614932 POTEB2H3BUK9 544 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 ECEL1O95672 775 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 PEX19P40855 299 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 NEXNQ0ZGT2 675 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 ANKRD13DQ6ZTN6 518 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 MKL1Q969V6 931 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 SPDL1Q96EA4 605 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 EDC3Q96F86 508 aaKnown RBP11.63□□□□□ -0.55
VPS39-214ENST00000614932 KLC4Q9NSK0 619 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 ATXN2Q99700 1313 aaKnown RBP11.63□□□□□ -0.55
VPS39-214ENST00000614932 TNS3Q68CZ2 1445 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 PXDNLA1KZ92 1463 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 FANCGO15287 622 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 CDKL5O76039 1030 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 SASH1O94885 1247 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 A1BGP04217 495 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 EZRP15311 586 aaKnown RBP11.63□□□□□ -0.55
VPS39-214ENST00000614932 EVA1CP58658 441 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 CEP85LQ5SZL2 805 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 TLDC1Q6P9B6 456 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 LARP1Q6PKG0 1096 aaKnown RBP11.63□□□□□ -0.55
VPS39-214ENST00000614932 RINLQ6ZS11 566 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 TCP11Q8WWU5 503 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 DCAF5Q96JK2 942 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 BOLA2Q9H3K6 86 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 MYO6Q9UM54 1294 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 TBC1D2BQ9UPU7 963 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 PCDHGA4Q9Y5G9 962 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 MRFAP1Q9Y605 127 aa11.63□□□□□ -0.55
VPS39-214ENST00000614932 HEG1Q9ULI3 1381 aa11.62□□□□□ -0.55
VPS39-214ENST00000614932 A0A0G2JS52 829 aa11.62□□□□□ -0.55
VPS39-214ENST00000614932 NEURL1BA8MQ27 555 aa11.62□□□□□ -0.55
VPS39-214ENST00000614932 SHOX2O60902 331 aaPredicted RBP11.62□□□□□ -0.55
VPS39-214ENST00000614932 ALDH1L1O75891 902 aa11.62□□□□□ -0.55
VPS39-214ENST00000614932 SNRPA1P09661 255 aaKnown RBP11.62□□□□□ -0.55
VPS39-214ENST00000614932 SFPQP23246 707 aaKnown RBP eCLIP11.62□□□□□ -0.55
VPS39-214ENST00000614932 G3BP1Q13283 466 aaKnown RBP eCLIP11.62□□□□□ -0.55
VPS39-214ENST00000614932 SPDYE1Q8NFV5 336 aaPredicted RBP11.62□□□□□ -0.55
VPS39-214ENST00000614932 EAF2Q96CJ1 260 aaPredicted RBP11.62□□□□□ -0.55
VPS39-214ENST00000614932 DDX20Q9UHI6 824 aaKnown RBP11.62□□□□□ -0.55
VPS39-214ENST00000614932 NCAPD2Q15021 1401 aa11.62□□□□□ -0.55
VPS39-214ENST00000614932 PES1O00541 588 aaKnown RBP11.62□□□□□ -0.55
VPS39-214ENST00000614932 NCAPG2Q86XI2 1143 aa11.62□□□□□ -0.55
VPS39-214ENST00000614932 CNTROBQ8N137 903 aa11.62□□□□□ -0.55
VPS39-214ENST00000614932 MAB21L3Q8N8X9 362 aa11.62□□□□□ -0.55
VPS39-214ENST00000614932 FMNL2Q96PY5 1086 aa11.62□□□□□ -0.55
VPS39-214ENST00000614932 SHTN1A0MZ66 631 aa11.61□□□□□ -0.55
VPS39-214ENST00000614932 BECN2A8MW95 431 aa11.61□□□□□ -0.55
VPS39-214ENST00000614932 RNF40O75150 1001 aa11.61□□□□□ -0.55
VPS39-214ENST00000614932 CHGBP05060 677 aa11.61□□□□□ -0.55
VPS39-214ENST00000614932 PYGLP06737 847 aa11.61□□□□□ -0.55
VPS39-214ENST00000614932 IMPDH2P12268 514 aa11.61□□□□□ -0.55
VPS39-214ENST00000614932 GCKRQ14397 625 aa11.61□□□□□ -0.55
VPS39-214ENST00000614932 PDIA5Q14554 519 aa11.61□□□□□ -0.55
VPS39-214ENST00000614932 CASP8Q14790 479 aa11.61□□□□□ -0.55
VPS39-214ENST00000614932 ZBTB3Q9H5J0 574 aa11.61□□□□□ -0.55
VPS39-214ENST00000614932 ATP6V0A4Q9HBG4 840 aa11.61□□□□□ -0.55
VPS39-214ENST00000614932 GOPCQ9HD26 462 aa11.61□□□□□ -0.55
VPS39-214ENST00000614932 BATF3Q9NR55 127 aa11.61□□□□□ -0.55
VPS39-214ENST00000614932 LMCD1Q9NZU5 365 aa11.61□□□□□ -0.55
VPS39-214ENST00000614932 RAB21Q9UL25 225 aa11.61□□□□□ -0.55
VPS39-214ENST00000614932 IBSPP21815 317 aaPredicted RBP11.61□□□□□ -0.55
VPS39-214ENST00000614932 CD151P48509 253 aa11.61□□□□□ -0.55
VPS39-214ENST00000614932 HHATQ5VTY9 493 aa11.61□□□□□ -0.55
VPS39-214ENST00000614932 ARMCX5Q6P1M9 558 aa11.61□□□□□ -0.55
VPS39-214ENST00000614932 TTLL7Q6ZT98 887 aa11.61□□□□□ -0.55
VPS39-214ENST00000614932 TTC6Q86TZ1 520 aa11.61□□□□□ -0.55
VPS39-214ENST00000614932 ZCRB1Q8TBF4 217 aaKnown RBP11.61□□□□□ -0.55
VPS39-214ENST00000614932 CCDC85AQ96PX6 553 aaPredicted RBP11.61□□□□□ -0.55
VPS39-214ENST00000614932 IRX2Q9BZI1 471 aaPredicted RBP11.61□□□□□ -0.55
VPS39-214ENST00000614932 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.61□□□□□ -0.55
VPS39-214ENST00000614932 ALS2Q96Q42 1657 aa11.61□□□□□ -0.55
VPS39-214ENST00000614932 A0A087WZG4 1122 aa11.6□□□□□ -0.55
VPS39-214ENST00000614932 KIAA0754O94854 1291 aa11.6□□□□□ -0.55
VPS39-214ENST00000614932 ACTN3Q08043 901 aaPredicted RBP11.6□□□□□ -0.55
VPS39-214ENST00000614932 FILIP1LQ4L180 1135 aa11.6□□□□□ -0.55
VPS39-214ENST00000614932 CEP57Q86XR8 500 aa11.6□□□□□ -0.55
VPS39-214ENST00000614932 RASEFQ8IZ41 740 aa11.6□□□□□ -0.55
VPS39-214ENST00000614932 KIRREL3Q8IZU9 778 aa11.6□□□□□ -0.55
VPS39-214ENST00000614932 TSPAN18Q96SJ8 248 aa11.6□□□□□ -0.55
VPS39-214ENST00000614932 ABCB6Q9NP58 842 aa11.6□□□□□ -0.55
VPS39-214ENST00000614932 GOLGA6L4A6NEF3 574 aa11.6□□□□□ -0.55
VPS39-214ENST00000614932 ENO4A6NNW6 628 aa11.6□□□□□ -0.55
VPS39-214ENST00000614932 EPB41L2O43491 1005 aaKnown RBP11.6□□□□□ -0.55
VPS39-214ENST00000614932 RTN3O95197 1032 aaPredicted RBP11.6□□□□□ -0.55
VPS39-214ENST00000614932 SMTNP53814 917 aa11.6□□□□□ -0.55
VPS39-214ENST00000614932 KRT85P78386 507 aa11.6□□□□□ -0.55
VPS39-214ENST00000614932 MYSM1Q5VVJ2 828 aa11.6□□□□□ -0.55
VPS39-214ENST00000614932 LMBR1Q8WVP7 490 aa11.6□□□□□ -0.55
VPS39-214ENST00000614932 IL17RAQ96F46 866 aa11.6□□□□□ -0.55
VPS39-214ENST00000614932 NAT10Q9H0A0 1025 aaKnown RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms