RNA–Protein interactions for RNA: ENST00000612856.4

FAM3A-221, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 2

Gene FAM3A, Length 3,995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-221ENST00000612856 SCLT1Q96NL6 688 aa12.44□□□□□ -0.42
FAM3A-221ENST00000612856 NUP62CLQ9H1M0 184 aa12.44□□□□□ -0.42
FAM3A-221ENST00000612856 NARFQ9UHQ1 456 aa12.44□□□□□ -0.42
FAM3A-221ENST00000612856 ZBTB21Q9ULJ3 1066 aa12.44□□□□□ -0.42
FAM3A-221ENST00000612856 MARCKSP29966 332 aaPredicted RBP12.43□□□□□ -0.42
FAM3A-221ENST00000612856 NF2P35240 595 aa12.43□□□□□ -0.42
FAM3A-221ENST00000612856 AK2P54819 239 aa12.43□□□□□ -0.42
FAM3A-221ENST00000612856 NCBP1Q09161 790 aaKnown RBP12.43□□□□□ -0.42
FAM3A-221ENST00000612856 CCDC171Q6TFL3 1326 aa12.43□□□□□ -0.42
FAM3A-221ENST00000612856 IDEP14735 1019 aa12.43□□□□□ -0.42
FAM3A-221ENST00000612856 PDIA6Q15084 440 aa12.43□□□□□ -0.42
FAM3A-221ENST00000612856 TTLL6Q8N841 843 aa12.43□□□□□ -0.42
FAM3A-221ENST00000612856 CCDC47Q96A33 483 aaKnown RBP12.43□□□□□ -0.42
FAM3A-221ENST00000612856 NRBP1Q9UHY1 535 aa12.43□□□□□ -0.42
FAM3A-221ENST00000612856 SPATA31A6Q5VVP1 1343 aa12.43□□□□□ -0.42
FAM3A-221ENST00000612856 SORBS3O60504 671 aa12.43□□□□□ -0.42
FAM3A-221ENST00000612856 TBC1D10BQ4KMP7 808 aaPredicted RBP12.43□□□□□ -0.42
FAM3A-221ENST00000612856 DPY19L2Q6NUT2 758 aa12.43□□□□□ -0.42
FAM3A-221ENST00000612856 VTI1AQ96AJ9 217 aa12.43□□□□□ -0.42
FAM3A-221ENST00000612856 ZNF215Q9UL58 517 aaPredicted RBP12.43□□□□□ -0.42
FAM3A-221ENST00000612856 ZDHHC9Q9Y397 364 aa12.43□□□□□ -0.42
FAM3A-221ENST00000612856 GOLGA8HP0CJ92 632 aa12.42□□□□□ -0.42
FAM3A-221ENST00000612856 PDE6AP16499 860 aa12.42□□□□□ -0.42
FAM3A-221ENST00000612856 PRDX5P30044 214 aa12.42□□□□□ -0.42
FAM3A-221ENST00000612856 TXLNAP40222 546 aa12.42□□□□□ -0.42
FAM3A-221ENST00000612856 MAP3K11Q16584 847 aa12.42□□□□□ -0.42
FAM3A-221ENST00000612856 PRAMEF18Q5VWM3 479 aa12.42□□□□□ -0.42
FAM3A-221ENST00000612856 WDR66Q8TBY9 1149 aa12.42□□□□□ -0.42
FAM3A-221ENST00000612856 PI4K2BQ8TCG2 481 aa12.42□□□□□ -0.42
FAM3A-221ENST00000612856 PHKBQ93100 1093 aa12.42□□□□□ -0.42
FAM3A-221ENST00000612856 SMTNL1A8MU46 457 aa12.42□□□□□ -0.42
FAM3A-221ENST00000612856 TNNI2P48788 182 aa12.42□□□□□ -0.42
FAM3A-221ENST00000612856 DNM1Q05193 864 aaKnown RBP12.42□□□□□ -0.42
FAM3A-221ENST00000612856 RTN1Q16799 776 aa12.42□□□□□ -0.42
FAM3A-221ENST00000612856 AOC3Q16853 763 aa12.42□□□□□ -0.42
FAM3A-221ENST00000612856 KIF18AQ8NI77 898 aa12.42□□□□□ -0.42
FAM3A-221ENST00000612856 KIAA1524Q8TCG1 905 aa12.42□□□□□ -0.42
FAM3A-221ENST00000612856 BIN2Q9UBW5 565 aaPredicted RBP12.42□□□□□ -0.42
FAM3A-221ENST00000612856 CCDC196A0A1B0GTZ2 297 aa12.42□□□□□ -0.42
FAM3A-221ENST00000612856 WDHD1O75717 1129 aaPredicted RBP12.42□□□□□ -0.42
FAM3A-221ENST00000612856 LMAN1P49257 510 aa12.42□□□□□ -0.42
FAM3A-221ENST00000612856 POLA2Q14181 598 aa12.42□□□□□ -0.42
FAM3A-221ENST00000612856 TERF2Q15554 542 aa12.42□□□□□ -0.42
FAM3A-221ENST00000612856 UBXN4Q92575 508 aa12.42□□□□□ -0.42
FAM3A-221ENST00000612856 APPBP2Q92624 585 aa12.42□□□□□ -0.42
FAM3A-221ENST00000612856 MXD3Q9BW11 206 aa12.42□□□□□ -0.42
FAM3A-221ENST00000612856 ZBTB12Q9Y330 459 aaPredicted RBP12.42□□□□□ -0.42
FAM3A-221ENST00000612856 MEGF6O75095 1541 aa12.42□□□□□ -0.42
FAM3A-221ENST00000612856 COL15A1P39059 1388 aa12.41□□□□□ -0.42
FAM3A-221ENST00000612856 TTC41PQ6P2S7 1318 aa12.41□□□□□ -0.42
FAM3A-221ENST00000612856 TFAP4Q01664 338 aa12.41□□□□□ -0.42
FAM3A-221ENST00000612856 USH1GQ495M9 461 aa12.41□□□□□ -0.42
FAM3A-221ENST00000612856 TMCO3Q6UWJ1 677 aa12.41□□□□□ -0.42
FAM3A-221ENST00000612856 ZSCAN31Q96LW9 406 aaPredicted RBP12.41□□□□□ -0.42
FAM3A-221ENST00000612856 TANGO6Q9C0B7 1094 aa12.41□□□□□ -0.42
FAM3A-221ENST00000612856 DALRD3Q5D0E6 543 aaKnown RBP12.41□□□□□ -0.42
FAM3A-221ENST00000612856 ZNF397Q8NF99 534 aaPredicted RBP12.41□□□□□ -0.42
FAM3A-221ENST00000612856 ZNF396Q96N95 335 aaPredicted RBP12.41□□□□□ -0.42
FAM3A-221ENST00000612856 ALG1Q9BT22 464 aa12.41□□□□□ -0.42
FAM3A-221ENST00000612856 INCENPQ9NQS7 918 aa12.41□□□□□ -0.42
FAM3A-221ENST00000612856 SGSM2O43147 1006 aa12.41□□□□□ -0.42
FAM3A-221ENST00000612856 TEKT1Q969V4 418 aa12.41□□□□□ -0.42
FAM3A-221ENST00000612856 KAZALD1Q96I82 304 aa12.41□□□□□ -0.42
FAM3A-221ENST00000612856 NALCNQ8IZF0 1738 aa12.41□□□□□ -0.42
FAM3A-221ENST00000612856 MROH5Q6ZUA9 1318 aa12.4□□□□□ -0.42
FAM3A-221ENST00000612856 UBE2HP62256 183 aa12.4□□□□□ -0.42
FAM3A-221ENST00000612856 ADCK5Q3MIX3 580 aa12.4□□□□□ -0.42
FAM3A-221ENST00000612856 KRBA2Q6ZNG9 492 aa12.4□□□□□ -0.42
FAM3A-221ENST00000612856 CWC15Q9P013 229 aaKnown RBP12.4□□□□□ -0.42
FAM3A-221ENST00000612856 SNX14Q9Y5W7 946 aa12.4□□□□□ -0.42
FAM3A-221ENST00000612856 AK9Q5TCS8 1911 aa12.4□□□□□ -0.42
FAM3A-221ENST00000612856 SMC2O95347 1197 aa12.4□□□□□ -0.42
FAM3A-221ENST00000612856 MATR3P43243 847 aaKnown RBP eCLIP12.4□□□□□ -0.42
FAM3A-221ENST00000612856 HNRNPH2P55795 449 aaKnown RBP12.4□□□□□ -0.42
FAM3A-221ENST00000612856 BMS1Q14692 1282 aaKnown RBP12.4□□□□□ -0.42
FAM3A-221ENST00000612856 ANO6Q4KMQ2 910 aa12.4□□□□□ -0.42
FAM3A-221ENST00000612856 LRRC47Q8N1G4 583 aaKnown RBP12.4□□□□□ -0.42
FAM3A-221ENST00000612856 OSBPL3Q9H4L5 887 aa12.4□□□□□ -0.42
FAM3A-221ENST00000612856 PAXBP1Q9Y5B6 917 aa12.4□□□□□ -0.42
FAM3A-221ENST00000612856 MST1RQ04912 1400 aa12.4□□□□□ -0.42
FAM3A-221ENST00000612856 BTDP43251 543 aa12.4□□□□□ -0.42
FAM3A-221ENST00000612856 NAPAP54920 295 aa12.4□□□□□ -0.42
FAM3A-221ENST00000612856 ENOX2Q16206 610 aaKnown RBP12.4□□□□□ -0.42
FAM3A-221ENST00000612856 TTC6Q86TZ1 520 aa12.4□□□□□ -0.42
FAM3A-221ENST00000612856 PAGR1Q9BTK6 254 aa12.4□□□□□ -0.42
FAM3A-221ENST00000612856 GDF11O95390 407 aa12.39□□□□□ -0.43
FAM3A-221ENST00000612856 SKILP12757 684 aa12.39□□□□□ -0.43
FAM3A-221ENST00000612856 ZNF165P49910 485 aa12.39□□□□□ -0.43
FAM3A-221ENST00000612856 NSMFQ6X4W1 530 aa12.39□□□□□ -0.43
FAM3A-221ENST00000612856 GINS2Q9Y248 185 aa12.39□□□□□ -0.43
FAM3A-221ENST00000612856 STX6O43752 255 aa12.39□□□□□ -0.43
FAM3A-221ENST00000612856 RASGRF1Q13972 1273 aa12.39□□□□□ -0.43
FAM3A-221ENST00000612856 URI1O94763 535 aaPredicted RBP12.38□□□□□ -0.43
FAM3A-221ENST00000612856 HMGB1P09429 215 aaKnown RBP12.38□□□□□ -0.43
FAM3A-221ENST00000612856 EPS15P42566 896 aa12.38□□□□□ -0.43
FAM3A-221ENST00000612856 ZNF589Q86UQ0 364 aaPredicted RBP12.38□□□□□ -0.43
FAM3A-221ENST00000612856 TSPYL1Q9H0U9 437 aa12.38□□□□□ -0.43
FAM3A-221ENST00000612856 DNAJC25Q9H1X3 360 aa12.38□□□□□ -0.43
FAM3A-221ENST00000612856 RASSF4Q9H2L5 321 aa12.38□□□□□ -0.43
FAM3A-221ENST00000612856 COPRSQ9NQ92 184 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms