RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 PRNPP04156 253 aa7.35□□□□□ -1.23
LINC00540-201ENST00000611481 USP11P51784 963 aa7.35□□□□□ -1.23
LINC00540-201ENST00000611481 RBM6P78332 1123 aaKnown RBP7.35□□□□□ -1.23
LINC00540-201ENST00000611481 NFKBIBQ15653 356 aa7.35□□□□□ -1.23
LINC00540-201ENST00000611481 NOM1Q5C9Z4 860 aaKnown RBP7.35□□□□□ -1.23
LINC00540-201ENST00000611481 VN1R5Q7Z5H4 357 aa7.35□□□□□ -1.23
LINC00540-201ENST00000611481 VSIG10LQ86VR7 867 aa7.35□□□□□ -1.23
LINC00540-201ENST00000611481 THEMISQ8N1K5 641 aaPredicted RBP7.35□□□□□ -1.23
LINC00540-201ENST00000611481 HELQQ8TDG4 1101 aa7.35□□□□□ -1.23
LINC00540-201ENST00000611481 CHRDQ9H2X0 955 aa7.35□□□□□ -1.23
LINC00540-201ENST00000611481 SOX17Q9H6I2 414 aaPredicted RBP7.35□□□□□ -1.23
LINC00540-201ENST00000611481 TNRQ92752 1358 aa7.34□□□□□ -1.23
LINC00540-201ENST00000611481 PDGFAP04085 211 aa7.34□□□□□ -1.23
LINC00540-201ENST00000611481 MZF1P28698 734 aaPredicted RBP7.34□□□□□ -1.23
LINC00540-201ENST00000611481 GGT6Q6P531 493 aa7.34□□□□□ -1.23
LINC00540-201ENST00000611481 ZKSCAN3Q9BRR0 538 aa7.34□□□□□ -1.23
LINC00540-201ENST00000611481 MYO5CQ9NQX4 1742 aa7.34□□□□□ -1.23
LINC00540-201ENST00000611481 ARHGAP5Q13017 1502 aa7.33□□□□□ -1.24
LINC00540-201ENST00000611481 A6NHS1 94 aa7.33□□□□□ -1.24
LINC00540-201ENST00000611481 EIF4EBP3O60516 100 aaPredicted RBP7.33□□□□□ -1.24
LINC00540-201ENST00000611481 EDN3P14138 238 aa7.33□□□□□ -1.24
LINC00540-201ENST00000611481 EXOSC6Q5RKV6 272 aaKnown RBP7.33□□□□□ -1.24
LINC00540-201ENST00000611481 TP53INP2Q8IXH6 220 aa7.33□□□□□ -1.24
LINC00540-201ENST00000611481 FBLIM1Q8WUP2 373 aa7.33□□□□□ -1.24
LINC00540-201ENST00000611481 YIPF2Q9BWQ6 316 aa7.33□□□□□ -1.24
LINC00540-201ENST00000611481 SLAIN2Q9P270 581 aa7.33□□□□□ -1.24
LINC00540-201ENST00000611481 COL16A1Q07092 1604 aaPredicted RBP7.32□□□□□ -1.24
LINC00540-201ENST00000611481 CYP26A1O43174 497 aa7.32□□□□□ -1.24
LINC00540-201ENST00000611481 DRD2P14416 443 aa7.32□□□□□ -1.24
LINC00540-201ENST00000611481 CDPF1Q6NVV7 123 aa7.32□□□□□ -1.24
LINC00540-201ENST00000611481 CBLL1Q75N03 491 aa7.32□□□□□ -1.24
LINC00540-201ENST00000611481 ASIC4Q96FT7 647 aa7.32□□□□□ -1.24
LINC00540-201ENST00000611481 BSDC1Q9NW68 430 aaPredicted RBP7.32□□□□□ -1.24
LINC00540-201ENST00000611481 KIDINS220Q9ULH0 1771 aa7.32□□□□□ -1.24
LINC00540-201ENST00000611481 TMEM94Q12767 1356 aa7.32□□□□□ -1.24
LINC00540-201ENST00000611481 KDM5DQ9BY66 1539 aa7.32□□□□□ -1.24
LINC00540-201ENST00000611481 FAM135AQ9P2D6 1515 aa7.32□□□□□ -1.24
LINC00540-201ENST00000611481 LRRC9Q6ZRR7 1453 aa7.31□□□□□ -1.24
LINC00540-201ENST00000611481 EREGO14944 169 aa7.31□□□□□ -1.24
LINC00540-201ENST00000611481 PHACTR2O75167 634 aa7.31□□□□□ -1.24
LINC00540-201ENST00000611481 DLGAP3O95886 979 aa7.31□□□□□ -1.24
LINC00540-201ENST00000611481 EIF1AXP47813 144 aaKnown RBP7.31□□□□□ -1.24
LINC00540-201ENST00000611481 LCE1DQ5T752 114 aa7.31□□□□□ -1.24
LINC00540-201ENST00000611481 OGFOD2Q6N063 350 aa7.31□□□□□ -1.24
LINC00540-201ENST00000611481 FGD6Q6ZV73 1430 aa7.31□□□□□ -1.24
LINC00540-201ENST00000611481 ZAR1Q86SH2 424 aa7.31□□□□□ -1.24
LINC00540-201ENST00000611481 C2CD4AQ8NCU7 369 aaPredicted RBP7.31□□□□□ -1.24
LINC00540-201ENST00000611481 ASAP3Q8TDY4 903 aa7.31□□□□□ -1.24
LINC00540-201ENST00000611481 TBC1D32Q96NH3 1257 aa7.31□□□□□ -1.24
LINC00540-201ENST00000611481 BHLHE41Q9C0J9 482 aaPredicted RBP7.31□□□□□ -1.24
LINC00540-201ENST00000611481 UGGT1Q9NYU2 1555 aa7.3□□□□□ -1.24
LINC00540-201ENST00000611481 ESRRAP11474 423 aaPredicted RBP7.3□□□□□ -1.24
LINC00540-201ENST00000611481 SOX4Q06945 474 aaPredicted RBP7.3□□□□□ -1.24
LINC00540-201ENST00000611481 ALKBH2Q6NS38 261 aa7.3□□□□□ -1.24
LINC00540-201ENST00000611481 NFXL1Q6ZNB6 911 aa7.3□□□□□ -1.24
LINC00540-201ENST00000611481 SHISA5Q8N114 240 aa7.3□□□□□ -1.24
LINC00540-201ENST00000611481 EZH1Q92800 747 aaPredicted RBP7.3□□□□□ -1.24
LINC00540-201ENST00000611481 PBXIP1Q96AQ6 731 aa7.3□□□□□ -1.24
LINC00540-201ENST00000611481 PRKAG2Q9UGJ0 569 aa7.3□□□□□ -1.24
LINC00540-201ENST00000611481 SUPT5HO00267 1087 aaKnown RBP7.29□□□□□ -1.24
LINC00540-201ENST00000611481 TNFRSF21O75509 655 aa7.29□□□□□ -1.24
LINC00540-201ENST00000611481 JUNBP17275 347 aaPredicted RBP7.29□□□□□ -1.24
LINC00540-201ENST00000611481 ADMP35318 185 aa7.29□□□□□ -1.24
LINC00540-201ENST00000611481 GSTM4Q03013 218 aa7.29□□□□□ -1.24
LINC00540-201ENST00000611481 HOMEZQ8IX15 550 aa7.29□□□□□ -1.24
LINC00540-201ENST00000611481 AGBL5Q8NDL9 886 aa7.29□□□□□ -1.24
LINC00540-201ENST00000611481 SNX29Q8TEQ0 813 aa7.29□□□□□ -1.24
LINC00540-201ENST00000611481 NHSL1Q5SYE7 1610 aa7.29□□□□□ -1.24
LINC00540-201ENST00000611481 ZC3H13Q5T200 1668 aaKnown RBP7.28□□□□□ -1.24
LINC00540-201ENST00000611481 ITGB5P18084 799 aa7.28□□□□□ -1.24
LINC00540-201ENST00000611481 MPSTP25325 297 aa7.28□□□□□ -1.24
LINC00540-201ENST00000611481 EHHADHQ08426 723 aa7.28□□□□□ -1.24
LINC00540-201ENST00000611481 DUSP27Q5VZP5 1158 aa7.28□□□□□ -1.24
LINC00540-201ENST00000611481 DEFB132Q7Z7B7 95 aa7.28□□□□□ -1.24
LINC00540-201ENST00000611481 POU5F2Q8N7G0 328 aa7.28□□□□□ -1.24
LINC00540-201ENST00000611481 C8orf37Q96NL8 207 aa7.28□□□□□ -1.24
LINC00540-201ENST00000611481 POLIQ9UNA4 740 aa7.28□□□□□ -1.24
LINC00540-201ENST00000611481 SAMD9Q5K651 1589 aa7.28□□□□□ -1.24
LINC00540-201ENST00000611481 FAM170BA6NMN3 283 aa7.27□□□□□ -1.25
LINC00540-201ENST00000611481 C1QTNF8P60827 252 aa7.27□□□□□ -1.25
LINC00540-201ENST00000611481 JAG1P78504 1218 aa7.27□□□□□ -1.25
LINC00540-201ENST00000611481 CYP27A1Q02318 531 aa7.27□□□□□ -1.25
LINC00540-201ENST00000611481 FLCNQ8NFG4 579 aa7.27□□□□□ -1.25
LINC00540-201ENST00000611481 GTF3C2Q8WUA4 911 aaPredicted RBP7.27□□□□□ -1.25
LINC00540-201ENST00000611481 SHPRHQ149N8 1683 aa7.27□□□□□ -1.25
LINC00540-201ENST00000611481 ATP7AQ04656 1500 aa7.27□□□□□ -1.25
LINC00540-201ENST00000611481 MAP3K1Q13233 1512 aa7.27□□□□□ -1.25
LINC00540-201ENST00000611481 NWD1Q149M9 1564 aa7.26□□□□□ -1.25
LINC00540-201ENST00000611481 NLRP1Q9C000 1473 aa7.26□□□□□ -1.25
LINC00540-201ENST00000611481 ADH5P11766 374 aa7.26□□□□□ -1.25
LINC00540-201ENST00000611481 USP5P45974 858 aa7.26□□□□□ -1.25
LINC00540-201ENST00000611481 RANGAP1P46060 587 aaPredicted RBP7.26□□□□□ -1.25
LINC00540-201ENST00000611481 AAMPQ13685 434 aa7.26□□□□□ -1.25
LINC00540-201ENST00000611481 MAP7Q14244 749 aa7.26□□□□□ -1.25
LINC00540-201ENST00000611481 HP1BP3Q5SSJ5 553 aaPredicted RBP7.26□□□□□ -1.25
LINC00540-201ENST00000611481 GATA6Q92908 595 aa7.26□□□□□ -1.25
LINC00540-201ENST00000611481 KRTAP4-7Q9BYR0 210 aa7.26□□□□□ -1.25
LINC00540-201ENST00000611481 AMOTL2Q9Y2J4 779 aa7.26□□□□□ -1.25
LINC00540-201ENST00000611481 MSH6P52701 1360 aa7.25□□□□□ -1.25
LINC00540-201ENST00000611481 C8AP07357 584 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms