RNA–Protein interactions for RNA: ENST00000607559.1

TPM2-208, Transcript of tropomyosin 2, human

TSL 2

Gene TPM2, Length 518 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM2-208	ENST00000607559	NFIA	Q12857	509 aa		13.2	□□□□□ -0.3
TPM2-208	ENST00000607559	TNNI3K	Q59H18	835 aa		13.2	□□□□□ -0.3
TPM2-208	ENST00000607559	CEP85	Q6P2H3	762 aa		13.2	□□□□□ -0.3
TPM2-208	ENST00000607559	ERO1B	Q86YB8	467 aa		13.2	□□□□□ -0.3
TPM2-208	ENST00000607559	ZNF296	Q8WUU4	475 aa	Predicted RBP	13.2	□□□□□ -0.3
TPM2-208	ENST00000607559	NSUN4	Q96CB9	384 aa	Known RBP	13.2	□□□□□ -0.3
TPM2-208	ENST00000607559	R3HDML	Q9H3Y0	253 aa		13.2	□□□□□ -0.3
TPM2-208	ENST00000607559	ZCCHC17	Q9NP64	241 aa	Known RBP	13.2	□□□□□ -0.3
TPM2-208	ENST00000607559	ZBTB40	Q9NUA8	1239 aa		13.2	□□□□□ -0.3
TPM2-208	ENST00000607559	USP40	Q9NVE5	1235 aa		13.2	□□□□□ -0.3
TPM2-208	ENST00000607559	FPGT-TNNI3K	V9GXZ4	949 aa		13.2	□□□□□ -0.3
TPM2-208	ENST00000607559	ATRNL1	Q5VV63	1379 aa		13.2	□□□□□ -0.3
TPM2-208	ENST00000607559	SURF6	O75683	361 aa	Known RBP	13.19	□□□□□ -0.3
TPM2-208	ENST00000607559	WDHD1	O75717	1129 aa	Predicted RBP	13.19	□□□□□ -0.3
TPM2-208	ENST00000607559	LDHC	P07864	332 aa		13.19	□□□□□ -0.3
TPM2-208	ENST00000607559	MCAM	P43121	646 aa		13.19	□□□□□ -0.3
TPM2-208	ENST00000607559	GTF2A2	P52657	109 aa		13.19	□□□□□ -0.3
TPM2-208	ENST00000607559	RHBDL3	P58872	404 aa		13.19	□□□□□ -0.3
TPM2-208	ENST00000607559	MECOM	Q03112	1051 aa		13.19	□□□□□ -0.3
TPM2-208	ENST00000607559	MKRN3	Q13064	507 aa	Known RBP	13.19	□□□□□ -0.3
TPM2-208	ENST00000607559	OTUD7B	Q6GQQ9	843 aa		13.19	□□□□□ -0.3
TPM2-208	ENST00000607559	TMED8	Q6PL24	325 aa	Predicted RBP	13.19	□□□□□ -0.3
TPM2-208	ENST00000607559	ERICH6	Q7L0X2	663 aa		13.19	□□□□□ -0.3
TPM2-208	ENST00000607559	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.19	□□□□□ -0.3
TPM2-208	ENST00000607559	RPAP2	Q8IXW5	612 aa	Predicted RBP	13.19	□□□□□ -0.3
TPM2-208	ENST00000607559	PANK1	Q8TE04	598 aa		13.19	□□□□□ -0.3
TPM2-208	ENST00000607559	OPTN	Q96CV9	577 aa		13.19	□□□□□ -0.3
TPM2-208	ENST00000607559	ZNF341	Q9BYN7	854 aa		13.19	□□□□□ -0.3
TPM2-208	ENST00000607559	CSAD	Q9Y600	493 aa		13.19	□□□□□ -0.3
TPM2-208	ENST00000607559	SNCAIP	Q9Y6H5	919 aa		13.19	□□□□□ -0.3
TPM2-208	ENST00000607559	MROH7-TTC4	A0A0A0MT08	1334 aa		13.18	□□□□□ -0.3
TPM2-208	ENST00000607559	PHF20L1	A8MW92	1017 aa		13.18	□□□□□ -0.3
TPM2-208	ENST00000607559	FKTN	O75072	461 aa		13.18	□□□□□ -0.3
TPM2-208	ENST00000607559	GSTO1	P78417	241 aa		13.18	□□□□□ -0.3
TPM2-208	ENST00000607559	PPAT	Q06203	517 aa		13.18	□□□□□ -0.3
TPM2-208	ENST00000607559	NOL9	Q5SY16	702 aa	Known RBP	13.18	□□□□□ -0.3
TPM2-208	ENST00000607559	GORAB	Q5T7V8	394 aa		13.18	□□□□□ -0.3
TPM2-208	ENST00000607559	ZFPM1	Q8IX07	1006 aa		13.18	□□□□□ -0.3
TPM2-208	ENST00000607559	ELP3	Q9H9T3	547 aa		13.18	□□□□□ -0.3
TPM2-208	ENST00000607559	ABCF2	Q9UG63	623 aa		13.18	□□□□□ -0.3
TPM2-208	ENST00000607559	TBC1D12	O60347	775 aa		13.17	□□□□□ -0.3
TPM2-208	ENST00000607559	PPP4C	P60510	307 aa		13.17	□□□□□ -0.3
TPM2-208	ENST00000607559	PPIL2	Q13356	520 aa		13.17	□□□□□ -0.3
TPM2-208	ENST00000607559	PDE3A	Q14432	1141 aa		13.17	□□□□□ -0.3
TPM2-208	ENST00000607559	CCDC158	Q5M9N0	1113 aa		13.17	□□□□□ -0.3
TPM2-208	ENST00000607559	SH3BP5L	Q7L8J4	393 aa		13.17	□□□□□ -0.3
TPM2-208	ENST00000607559	DZIP1	Q86YF9	867 aa	Known RBP	13.17	□□□□□ -0.3
TPM2-208	ENST00000607559	BRI3BP	Q8WY22	251 aa		13.17	□□□□□ -0.3
TPM2-208	ENST00000607559	EAF2	Q96CJ1	260 aa	Predicted RBP	13.17	□□□□□ -0.3
TPM2-208	ENST00000607559	WRNIP1	Q96S55	665 aa		13.17	□□□□□ -0.3
TPM2-208	ENST00000607559	DBNDD2	Q9BQY9	259 aa		13.17	□□□□□ -0.3
TPM2-208	ENST00000607559	CHMP4B	Q9H444	224 aa	Known RBP	13.17	□□□□□ -0.3
TPM2-208	ENST00000607559	RCAN3	Q9UKA8	241 aa		13.17	□□□□□ -0.3
TPM2-208	ENST00000607559	DDX19B	Q9UMR2	479 aa		13.17	□□□□□ -0.3
TPM2-208	ENST00000607559	KCNH4	Q9UQ05	1017 aa		13.17	□□□□□ -0.3
TPM2-208	ENST00000607559	ECM2	O94769	699 aa	Predicted RBP	13.16	□□□□□ -0.3
TPM2-208	ENST00000607559	CETP	P11597	493 aa		13.16	□□□□□ -0.3
TPM2-208	ENST00000607559	RGS3	P49796	1198 aa		13.16	□□□□□ -0.3
TPM2-208	ENST00000607559	HSP90AB4P	Q58FF6	505 aa		13.16	□□□□□ -0.3
TPM2-208	ENST00000607559	PI16	Q6UXB8	463 aa		13.16	□□□□□ -0.3
TPM2-208	ENST00000607559	ERC1	Q8IUD2	1116 aa		13.16	□□□□□ -0.3
TPM2-208	ENST00000607559	SIRT2	Q8IXJ6	389 aa		13.16	□□□□□ -0.3
TPM2-208	ENST00000607559	ZKSCAN4	Q969J2	545 aa	Predicted RBP	13.16	□□□□□ -0.3
TPM2-208	ENST00000607559	C1orf115	Q9H7X2	142 aa		13.16	□□□□□ -0.3
TPM2-208	ENST00000607559	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.16	□□□□□ -0.3
TPM2-208	ENST00000607559	DBNL	Q9UJU6	430 aa	Known RBP	13.16	□□□□□ -0.3
TPM2-208	ENST00000607559	HPS5	Q9UPZ3	1129 aa		13.16	□□□□□ -0.3
TPM2-208	ENST00000607559	TNRC18	O15417	2968 aa	Predicted RBP	13.16	□□□□□ -0.3
TPM2-208	ENST00000607559	COL2A1	P02458	1487 aa	Predicted RBP	13.16	□□□□□ -0.3
TPM2-208	ENST00000607559	KIAA0100	Q14667	2235 aa	Known RBP	13.15	□□□□□ -0.3
TPM2-208	ENST00000607559	IRF6	O14896	467 aa		13.15	□□□□□ -0.3
TPM2-208	ENST00000607559	ATMIN	O43313	823 aa	Predicted RBP	13.15	□□□□□ -0.3
TPM2-208	ENST00000607559	CYP2E1	P05181	493 aa	Predicted RBP	13.15	□□□□□ -0.3
TPM2-208	ENST00000607559	INPP5B	P32019	993 aa		13.15	□□□□□ -0.3
TPM2-208	ENST00000607559	TIE1	P35590	1138 aa		13.15	□□□□□ -0.3
TPM2-208	ENST00000607559	BTD	P43251	543 aa		13.15	□□□□□ -0.3
TPM2-208	ENST00000607559	TCP10	Q12799	353 aa		13.15	□□□□□ -0.3
TPM2-208	ENST00000607559	CRHR2	Q13324	411 aa		13.15	□□□□□ -0.3
TPM2-208	ENST00000607559	SNAPC2	Q13487	334 aa		13.15	□□□□□ -0.3
TPM2-208	ENST00000607559	FBXO46	Q6PJ61	603 aa	Predicted RBP	13.15	□□□□□ -0.3
TPM2-208	ENST00000607559	TBC1D9	Q6ZT07	1266 aa		13.15	□□□□□ -0.3
TPM2-208	ENST00000607559	MIGA2	Q7L4E1	593 aa		13.15	□□□□□ -0.3
TPM2-208	ENST00000607559	DDX4	Q9NQI0	724 aa	Known RBP	13.15	□□□□□ -0.3
TPM2-208	ENST00000607559	CCL15-CCL14	A0A0B4J2E2	113 aa		13.14	□□□□□ -0.31
TPM2-208	ENST00000607559	DDTL	A6NHG4	134 aa	Predicted RBP	13.14	□□□□□ -0.31
TPM2-208	ENST00000607559	CXCL11	O14625	94 aa		13.14	□□□□□ -0.31
TPM2-208	ENST00000607559	SOX10	P56693	466 aa		13.14	□□□□□ -0.31
TPM2-208	ENST00000607559	CCL15	Q16663	113 aa		13.14	□□□□□ -0.31
TPM2-208	ENST00000607559	ASTL	Q6HA08	431 aa	Predicted RBP	13.14	□□□□□ -0.31
TPM2-208	ENST00000607559	METTL16	Q86W50	562 aa	Known RBP	13.14	□□□□□ -0.31
TPM2-208	ENST00000607559	OTUD5	Q96G74	571 aa		13.14	□□□□□ -0.31
TPM2-208	ENST00000607559	MYH13	Q9UKX3	1938 aa		13.13	□□□□□ -0.31
TPM2-208	ENST00000607559	CTNND1	O60716	968 aa	Known RBP	13.13	□□□□□ -0.31
TPM2-208	ENST00000607559	ATN1	P54259	1190 aa	Predicted RBP	13.13	□□□□□ -0.31
TPM2-208	ENST00000607559	OS9	Q13438	667 aa	Predicted RBP	13.13	□□□□□ -0.31
TPM2-208	ENST00000607559	MOGS	Q13724	837 aa		13.13	□□□□□ -0.31
TPM2-208	ENST00000607559	TTC39A	Q5SRH9	613 aa		13.13	□□□□□ -0.31
TPM2-208	ENST00000607559	FAM43A	Q8N2R8	423 aa		13.13	□□□□□ -0.31
TPM2-208	ENST00000607559	TMEM106C	Q9BVX2	250 aa		13.13	□□□□□ -0.31
TPM2-208	ENST00000607559	LRP2BP	Q9P2M1	347 aa		13.13	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms