RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 FAM83AQ86UY5 434 aa17.14■□□□□ 0.33
UPF1-211ENST00000600868 USP26Q9BXU7 913 aa17.14■□□□□ 0.33
UPF1-211ENST00000600868 NAPBQ9H115 298 aa17.14■□□□□ 0.33
UPF1-211ENST00000600868 VEZTQ9HBM0 779 aa17.14■□□□□ 0.33
UPF1-211ENST00000600868 PGAP2Q9UHJ9 254 aa17.14■□□□□ 0.33
UPF1-211ENST00000600868 U3KPZ7 1027 aaPredicted RBP17.14■□□□□ 0.33
UPF1-211ENST00000600868 ASTN2O75129 1339 aaPredicted RBP17.14■□□□□ 0.33
UPF1-211ENST00000600868 PITPNM2Q9BZ72 1349 aa17.14■□□□□ 0.33
UPF1-211ENST00000600868 TDO2P48775 406 aa17.13■□□□□ 0.33
UPF1-211ENST00000600868 TNNI2P48788 182 aa17.13■□□□□ 0.33
UPF1-211ENST00000600868 PICALMQ13492 652 aa17.13■□□□□ 0.33
UPF1-211ENST00000600868 ANGEL2Q5VTE6 544 aaKnown RBP17.13■□□□□ 0.33
UPF1-211ENST00000600868 APOBEC3FQ8IUX4 373 aaKnown RBP17.13■□□□□ 0.33
UPF1-211ENST00000600868 MAPKAPK5Q8IW41 473 aa17.13■□□□□ 0.33
UPF1-211ENST00000600868 OSBPL5Q9H0X9 879 aaPredicted RBP17.13■□□□□ 0.33
UPF1-211ENST00000600868 CTNNA3Q9UI47 895 aa17.13■□□□□ 0.33
UPF1-211ENST00000600868 COL2A1P02458 1487 aaPredicted RBP17.12■□□□□ 0.33
UPF1-211ENST00000600868 NAV1Q8NEY1 1877 aa17.12■□□□□ 0.33
UPF1-211ENST00000600868 TCP10L2B9ZVM9 353 aa17.12■□□□□ 0.33
UPF1-211ENST00000600868 SBK1Q52WX2 424 aa17.12■□□□□ 0.33
UPF1-211ENST00000600868 FAM151AQ8WW52 585 aa17.12■□□□□ 0.33
UPF1-211ENST00000600868 NMRK2Q9NPI5 230 aa17.12■□□□□ 0.33
UPF1-211ENST00000600868 MCM9Q9NXL9 1143 aa17.12■□□□□ 0.33
UPF1-211ENST00000600868 GGA3Q9NZ52 723 aa17.12■□□□□ 0.33
UPF1-211ENST00000600868 ARPP21Q9UBL0 812 aaPredicted RBP17.12■□□□□ 0.33
UPF1-211ENST00000600868 RBM8AQ9Y5S9 174 aaKnown RBP17.12■□□□□ 0.33
UPF1-211ENST00000600868 DDX60LQ5H9U9 1706 aaKnown RBP17.12■□□□□ 0.33
UPF1-211ENST00000600868 CNTNAP1P78357 1384 aa17.12■□□□□ 0.33
UPF1-211ENST00000600868 USP17L12C9JPN9 530 aa17.11■□□□□ 0.33
UPF1-211ENST00000600868 USP17L21D6R901 530 aa17.11■□□□□ 0.33
UPF1-211ENST00000600868 TCP10Q12799 353 aa17.11■□□□□ 0.33
UPF1-211ENST00000600868 NECTIN1Q15223 517 aa17.11■□□□□ 0.33
UPF1-211ENST00000600868 CTR9Q6PD62 1173 aa17.11■□□□□ 0.33
UPF1-211ENST00000600868 ZFPM1Q8IX07 1006 aa17.11■□□□□ 0.33
UPF1-211ENST00000600868 ZNF526Q8TF50 670 aaPredicted RBP17.11■□□□□ 0.33
UPF1-211ENST00000600868 DHX36Q9H2U1 1008 aaKnown RBP17.11■□□□□ 0.33
UPF1-211ENST00000600868 ATRNL1Q5VV63 1379 aa17.11■□□□□ 0.33
UPF1-211ENST00000600868 MYH1P12882 1939 aa17.1■□□□□ 0.33
UPF1-211ENST00000600868 BAZ2AQ9UIF9 1905 aaKnown RBP17.1■□□□□ 0.33
UPF1-211ENST00000600868 RASA3Q14644 834 aa17.1■□□□□ 0.33
UPF1-211ENST00000600868 EAPPQ56P03 285 aaPredicted RBP17.1■□□□□ 0.33
UPF1-211ENST00000600868 C12orf60Q5U649 245 aa17.1■□□□□ 0.33
UPF1-211ENST00000600868 AMOTL1Q8IY63 956 aa17.1■□□□□ 0.33
UPF1-211ENST00000600868 DCPSQ96C86 337 aaKnown RBP17.1■□□□□ 0.33
UPF1-211ENST00000600868 POLR3DP05423 398 aaPredicted RBP17.09■□□□□ 0.33
UPF1-211ENST00000600868 HSPA4P34932 840 aa17.09■□□□□ 0.33
UPF1-211ENST00000600868 IMMTQ16891 758 aaKnown RBP17.09■□□□□ 0.33
UPF1-211ENST00000600868 TTC6Q86TZ1 520 aa17.09■□□□□ 0.33
UPF1-211ENST00000600868 DEFB129Q9H1M3 183 aa17.09■□□□□ 0.33
UPF1-211ENST00000600868 UPF2Q9HAU5 1272 aaKnown RBP17.09■□□□□ 0.33
UPF1-211ENST00000600868 SAP30BPQ9UHR5 308 aaKnown RBP17.09■□□□□ 0.33
UPF1-211ENST00000600868 ANAPC4Q9UJX5 808 aa17.09■□□□□ 0.33
UPF1-211ENST00000600868 PALD1Q9ULE6 856 aa17.09■□□□□ 0.33
UPF1-211ENST00000600868 PPP2R3BQ9Y5P8 575 aa17.09■□□□□ 0.33
UPF1-211ENST00000600868 ZNF213O14771 459 aa17.08■□□□□ 0.32
UPF1-211ENST00000600868 MCCP23508 829 aa17.08■□□□□ 0.32
UPF1-211ENST00000600868 PPARAQ07869 468 aa17.08■□□□□ 0.32
UPF1-211ENST00000600868 RNF20Q5VTR2 975 aa17.08■□□□□ 0.32
UPF1-211ENST00000600868 CREB3L3Q68CJ9 461 aa17.08■□□□□ 0.32
UPF1-211ENST00000600868 SH3BP5LQ7L8J4 393 aa17.08■□□□□ 0.32
UPF1-211ENST00000600868 LDHDQ86WU2 507 aa17.08■□□□□ 0.32
UPF1-211ENST00000600868 KCNB2Q92953 911 aa17.08■□□□□ 0.32
UPF1-211ENST00000600868 TMEM39BQ9GZU3 492 aa17.08■□□□□ 0.32
UPF1-211ENST00000600868 GPBP1L1Q9HC44 474 aaPredicted RBP17.08■□□□□ 0.32
UPF1-211ENST00000600868 TAOK2Q9UL54 1235 aa17.08■□□□□ 0.32
UPF1-211ENST00000600868 DDTLA6NHG4 134 aaPredicted RBP17.07■□□□□ 0.32
UPF1-211ENST00000600868 MINDY4BA8MYZ0 360 aa17.07■□□□□ 0.32
UPF1-211ENST00000600868 SLC27A2O14975 620 aa17.07■□□□□ 0.32
UPF1-211ENST00000600868 HLA-DOAP06340 250 aa17.07■□□□□ 0.32
UPF1-211ENST00000600868 CYP2D6P10635 497 aa17.07■□□□□ 0.32
UPF1-211ENST00000600868 PLCD1P51178 756 aa17.07■□□□□ 0.32
UPF1-211ENST00000600868 SULF1Q8IWU6 871 aa17.07■□□□□ 0.32
UPF1-211ENST00000600868 ZSCAN29Q8IWY8 852 aaPredicted RBP17.07■□□□□ 0.32
UPF1-211ENST00000600868 TEPSINQ96N21 525 aa17.07■□□□□ 0.32
UPF1-211ENST00000600868 EHD4Q9H223 541 aa17.07■□□□□ 0.32
UPF1-211ENST00000600868 PI4KBQ9UBF8 816 aa17.07■□□□□ 0.32
UPF1-211ENST00000600868 CLEC11AQ9Y240 323 aa17.07■□□□□ 0.32
UPF1-211ENST00000600868 POLR2AP24928 1970 aaKnown RBP17.07■□□□□ 0.32
UPF1-211ENST00000600868 LAMA4Q16363 1823 aa17.07■□□□□ 0.32
UPF1-211ENST00000600868 LAMB1P07942 1786 aa17.07■□□□□ 0.32
UPF1-211ENST00000600868 ROBO3Q96MS0 1386 aa17.06■□□□□ 0.32
UPF1-211ENST00000600868 CYP2D7A0A087X1C5 515 aa17.06■□□□□ 0.32
UPF1-211ENST00000600868 CYP21A2P08686 494 aa17.06■□□□□ 0.32
UPF1-211ENST00000600868 POTEIP0CG38 1075 aa17.06■□□□□ 0.32
UPF1-211ENST00000600868 POTEJP0CG39 1038 aa17.06■□□□□ 0.32
UPF1-211ENST00000600868 TSGA10IPQ3SY00 556 aa17.06■□□□□ 0.32
UPF1-211ENST00000600868 KRT26Q7Z3Y9 468 aa17.06■□□□□ 0.32
UPF1-211ENST00000600868 METTL16Q86W50 562 aaKnown RBP17.06■□□□□ 0.32
UPF1-211ENST00000600868 SCAF8Q9UPN6 1271 aaKnown RBP17.06■□□□□ 0.32
UPF1-211ENST00000600868 SLC3A2P08195 630 aaKnown RBP17.05■□□□□ 0.32
UPF1-211ENST00000600868 YY1P25490 414 aa17.05■□□□□ 0.32
UPF1-211ENST00000600868 HAND2P61296 217 aa17.05■□□□□ 0.32
UPF1-211ENST00000600868 GABPAQ06546 454 aa17.05■□□□□ 0.32
UPF1-211ENST00000600868 CDC37L1Q7L3B6 337 aa17.05■□□□□ 0.32
UPF1-211ENST00000600868 FOXP4Q8IVH2 680 aaPredicted RBP17.05■□□□□ 0.32
UPF1-211ENST00000600868 CSRNP1Q96S65 589 aa17.05■□□□□ 0.32
UPF1-211ENST00000600868 C22orf23Q9BZE7 217 aa17.05■□□□□ 0.32
UPF1-211ENST00000600868 NBPF3Q9H094 633 aa17.05■□□□□ 0.32
UPF1-211ENST00000600868 SMIM22K7EJ46 135 aa17.04■□□□□ 0.32
UPF1-211ENST00000600868 FGRP09769 529 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms