RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 NOM1Q5C9Z4 860 aaKnown RBP22■■□□□ 1.11
LIG1-216ENST00000598938 ADD2P35612 726 aa21.99■■□□□ 1.11
LIG1-216ENST00000598938 RHBDL3P58872 404 aa21.99■■□□□ 1.11
LIG1-216ENST00000598938 PPP4CP60510 307 aa21.99■■□□□ 1.11
LIG1-216ENST00000598938 FKBP1CQ5VVH2 108 aa21.99■■□□□ 1.11
LIG1-216ENST00000598938 VEZTQ9HBM0 779 aa21.99■■□□□ 1.11
LIG1-216ENST00000598938 USP40Q9NVE5 1235 aa21.99■■□□□ 1.11
LIG1-216ENST00000598938 SCAF8Q9UPN6 1271 aaKnown RBP21.99■■□□□ 1.11
LIG1-216ENST00000598938 ZNF532Q9HCE3 1301 aa21.99■■□□□ 1.11
LIG1-216ENST00000598938 RFX7Q2KHR2 1363 aa21.99■■□□□ 1.11
LIG1-216ENST00000598938 ZSCAN25Q6NSZ9 544 aa21.98■■□□□ 1.11
LIG1-216ENST00000598938 EVI5LQ96CN4 794 aa21.98■■□□□ 1.11
LIG1-216ENST00000598938 TMOD2Q9NZR1 351 aa21.98■■□□□ 1.11
LIG1-216ENST00000598938 MYH7P12883 1935 aa21.98■■□□□ 1.11
LIG1-216ENST00000598938 BAG3O95817 575 aa21.97■■□□□ 1.11
LIG1-216ENST00000598938 CACNB3P54284 484 aa21.97■■□□□ 1.11
LIG1-216ENST00000598938 TNFAIP1Q13829 316 aa21.97■■□□□ 1.11
LIG1-216ENST00000598938 UBE3CQ15386 1083 aa21.97■■□□□ 1.11
LIG1-216ENST00000598938 NOL10Q9BSC4 688 aaKnown RBP21.97■■□□□ 1.11
LIG1-216ENST00000598938 AATFQ9NY61 560 aaKnown RBP eCLIP21.97■■□□□ 1.11
LIG1-216ENST00000598938 HPS5Q9UPZ3 1129 aa21.97■■□□□ 1.11
LIG1-216ENST00000598938 PPP2R3BQ9Y5P8 575 aa21.97■■□□□ 1.11
LIG1-216ENST00000598938 TCP10L2B9ZVM9 353 aa21.96■■□□□ 1.11
LIG1-216ENST00000598938 CHGBP05060 677 aa21.96■■□□□ 1.11
LIG1-216ENST00000598938 FAM83AQ86UY5 434 aa21.96■■□□□ 1.11
LIG1-216ENST00000598938 IDI2Q9BXS1 227 aa21.96■■□□□ 1.11
LIG1-216ENST00000598938 DEFB129Q9H1M3 183 aa21.96■■□□□ 1.11
LIG1-216ENST00000598938 LAMB1P07942 1786 aa21.95■■□□□ 1.1
LIG1-216ENST00000598938 WDHD1O75717 1129 aaPredicted RBP21.95■■□□□ 1.1
LIG1-216ENST00000598938 ZFYP08048 801 aaPredicted RBP21.95■■□□□ 1.1
LIG1-216ENST00000598938 PLCG2P16885 1265 aa21.95■■□□□ 1.1
LIG1-216ENST00000598938 TNNI2P48788 182 aa21.95■■□□□ 1.1
LIG1-216ENST00000598938 DYNLL1P63167 89 aaKnown RBP21.95■■□□□ 1.1
LIG1-216ENST00000598938 NFIAQ12857 509 aa21.95■■□□□ 1.1
LIG1-216ENST00000598938 RASA3Q14644 834 aa21.95■■□□□ 1.1
LIG1-216ENST00000598938 LRRFIP1Q32MZ4 808 aaKnown RBP21.95■■□□□ 1.1
LIG1-216ENST00000598938 SLFNL1Q499Z3 407 aa21.95■■□□□ 1.1
LIG1-216ENST00000598938 TTC22Q5TAA0 569 aa21.95■■□□□ 1.1
LIG1-216ENST00000598938 CERS3Q8IU89 383 aa21.95■■□□□ 1.1
LIG1-216ENST00000598938 MIGA1Q8NAN2 632 aa21.95■■□□□ 1.1
LIG1-216ENST00000598938 SH3RF3Q8TEJ3 882 aaPredicted RBP21.95■■□□□ 1.1
LIG1-216ENST00000598938 RIOK1Q9BRS2 568 aaKnown RBP21.95■■□□□ 1.1
LIG1-216ENST00000598938 FSD1Q9BTV5 496 aa21.95■■□□□ 1.1
LIG1-216ENST00000598938 TRIM6-TRIM34B2RNG4 842 aa21.94■■□□□ 1.1
LIG1-216ENST00000598938 RNF113AO15541 343 aaKnown RBP21.94■■□□□ 1.1
LIG1-216ENST00000598938 GSPT1P15170 499 aaKnown RBP21.94■■□□□ 1.1
LIG1-216ENST00000598938 TM4SF4P48230 202 aa21.94■■□□□ 1.1
LIG1-216ENST00000598938 SKAP1Q86WV1 359 aa21.94■■□□□ 1.1
LIG1-216ENST00000598938 TICAM2Q86XR7 235 aa21.94■■□□□ 1.1
LIG1-216ENST00000598938 CFHR5Q9BXR6 569 aa21.94■■□□□ 1.1
LIG1-216ENST00000598938 FAM198AQ9UFP1 575 aa21.94■■□□□ 1.1
LIG1-216ENST00000598938 NF2P35240 595 aa21.93■■□□□ 1.1
LIG1-216ENST00000598938 TEX11Q8IYF3 940 aa21.93■■□□□ 1.1
LIG1-216ENST00000598938 ZNF296Q8WUU4 475 aaPredicted RBP21.93■■□□□ 1.1
LIG1-216ENST00000598938 RPAP1Q9BWH6 1393 aaPredicted RBP21.92■■□□□ 1.1
LIG1-216ENST00000598938 MAGEB6P1A0A0J9YX57 407 aa21.92■■□□□ 1.1
LIG1-216ENST00000598938 ENTPD3O75355 529 aa21.92■■□□□ 1.1
LIG1-216ENST00000598938 NPM3O75607 178 aaKnown RBP21.92■■□□□ 1.1
LIG1-216ENST00000598938 PRAMEF18Q5VWM3 479 aa21.92■■□□□ 1.1
LIG1-216ENST00000598938 FAM151AQ8WW52 585 aa21.92■■□□□ 1.1
LIG1-216ENST00000598938 APPBP2Q92624 585 aa21.92■■□□□ 1.1
LIG1-216ENST00000598938 RILPL2Q969X0 211 aa21.92■■□□□ 1.1
LIG1-216ENST00000598938 TEPSINQ96N21 525 aa21.92■■□□□ 1.1
LIG1-216ENST00000598938 DDX4Q9NQI0 724 aaKnown RBP21.92■■□□□ 1.1
LIG1-216ENST00000598938 RGS3P49796 1198 aa21.91■■□□□ 1.1
LIG1-216ENST00000598938 SREBF2Q12772 1141 aa21.91■■□□□ 1.1
LIG1-216ENST00000598938 TMEM39BQ9GZU3 492 aa21.91■■□□□ 1.1
LIG1-216ENST00000598938 FBXO46Q6PJ61 603 aaPredicted RBP21.9■■□□□ 1.1
LIG1-216ENST00000598938 OSBP2Q969R2 916 aa21.9■■□□□ 1.1
LIG1-216ENST00000598938 PUS7LQ9H0K6 701 aaKnown RBP21.9■■□□□ 1.1
LIG1-216ENST00000598938 SSC5DA1L4H1 1573 aa21.9■■□□□ 1.1
LIG1-216ENST00000598938 FOCADQ5VW36 1801 aa21.9■■□□□ 1.1
LIG1-216ENST00000598938 UBE2Q2LH0YL09 131 aa21.89■■□□□ 1.09
LIG1-216ENST00000598938 GPR25O00155 361 aa21.89■■□□□ 1.09
LIG1-216ENST00000598938 MBD4O95243 580 aa21.89■■□□□ 1.09
LIG1-216ENST00000598938 TCP10Q12799 353 aa21.89■■□□□ 1.09
LIG1-216ENST00000598938 PICALMQ13492 652 aa21.89■■□□□ 1.09
LIG1-216ENST00000598938 ZMYM1Q5SVZ6 1142 aa21.89■■□□□ 1.09
LIG1-216ENST00000598938 CDAN1Q8IWY9 1227 aa21.89■■□□□ 1.09
LIG1-216ENST00000598938 ZFPM1Q8IX07 1006 aa21.89■■□□□ 1.09
LIG1-216ENST00000598938 LCORLQ8N3X6 602 aa21.89■■□□□ 1.09
LIG1-216ENST00000598938 ARMT1Q9H993 441 aa21.89■■□□□ 1.09
LIG1-216ENST00000598938 CDK5RAP2Q96SN8 1893 aa21.89■■□□□ 1.09
LIG1-216ENST00000598938 COL2A1P02458 1487 aaPredicted RBP21.89■■□□□ 1.09
LIG1-216ENST00000598938 TBC1D8O95759 1140 aa21.88■■□□□ 1.09
LIG1-216ENST00000598938 SDSP20132 328 aa21.88■■□□□ 1.09
LIG1-216ENST00000598938 NBPF12Q5TAG4 269 aaPredicted RBP21.88■■□□□ 1.09
LIG1-216ENST00000598938 MOB2Q70IA6 237 aa21.88■■□□□ 1.09
LIG1-216ENST00000598938 TGFBRAP1Q8WUH2 860 aa21.88■■□□□ 1.09
LIG1-216ENST00000598938 CRNKL1Q9BZJ0 848 aaKnown RBP21.88■■□□□ 1.09
LIG1-216ENST00000598938 FLT1P17948 1338 aa21.87■■□□□ 1.09
LIG1-216ENST00000598938 AK9Q5TCS8 1911 aa21.87■■□□□ 1.09
LIG1-216ENST00000598938 TTLL12Q14166 644 aaPredicted RBP21.87■■□□□ 1.09
LIG1-216ENST00000598938 SUPT20HL1Q3ZLR7 823 aa21.87■■□□□ 1.09
LIG1-216ENST00000598938 OSBPL5Q9H0X9 879 aaPredicted RBP21.87■■□□□ 1.09
LIG1-216ENST00000598938 ATRNL1Q5VV63 1379 aa21.87■■□□□ 1.09
LIG1-216ENST00000598938 M0R2C6 588 aa21.86■■□□□ 1.09
LIG1-216ENST00000598938 ALDH1A1P00352 501 aa21.86■■□□□ 1.09
LIG1-216ENST00000598938 SH3BP5LQ7L8J4 393 aa21.86■■□□□ 1.09
LIG1-216ENST00000598938 ARMC9Q7Z3E5 817 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms