RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 STK31Q9BXU1 1019 aa17.43■□□□□ 0.38
SHKBP1-218ENST00000598907 TTC28Q96AY4 2481 aa17.43■□□□□ 0.38
SHKBP1-218ENST00000598907 AK9Q5TCS8 1911 aa17.43■□□□□ 0.38
SHKBP1-218ENST00000598907 FRAT2O75474 233 aaPredicted RBP17.42■□□□□ 0.38
SHKBP1-218ENST00000598907 RARSP54136 660 aaKnown RBP17.42■□□□□ 0.38
SHKBP1-218ENST00000598907 ANKRD13CQ8N6S4 541 aa17.42■□□□□ 0.38
SHKBP1-218ENST00000598907 ZDHHC15Q96MV8 337 aa17.42■□□□□ 0.38
SHKBP1-218ENST00000598907 HMX1Q9NP08 348 aaPredicted RBP17.42■□□□□ 0.38
SHKBP1-218ENST00000598907 HDLBPQ00341 1268 aaKnown RBP17.41■□□□□ 0.38
SHKBP1-218ENST00000598907 ALDH1L2Q3SY69 923 aa17.41■□□□□ 0.38
SHKBP1-218ENST00000598907 NOL9Q5SY16 702 aaKnown RBP17.41■□□□□ 0.38
SHKBP1-218ENST00000598907 APOBEC3HQ6NTF7 200 aaKnown RBP17.41■□□□□ 0.38
SHKBP1-218ENST00000598907 VPS37DQ86XT2 251 aa17.41■□□□□ 0.38
SHKBP1-218ENST00000598907 MYLIPQ8WY64 445 aa17.41■□□□□ 0.38
SHKBP1-218ENST00000598907 ZNF112Q9UJU3 913 aa17.41■□□□□ 0.38
SHKBP1-218ENST00000598907 RCAN3Q9UKA8 241 aa17.41■□□□□ 0.38
SHKBP1-218ENST00000598907 A0A0G2JLL6 359 aaPredicted RBP17.4■□□□□ 0.38
SHKBP1-218ENST00000598907 CXCL11O14625 94 aa17.4■□□□□ 0.38
SHKBP1-218ENST00000598907 FOXO4P98177 505 aa17.4■□□□□ 0.38
SHKBP1-218ENST00000598907 CCDC57Q2TAC2 916 aa17.4■□□□□ 0.38
SHKBP1-218ENST00000598907 FKBP1CQ5VVH2 108 aa17.4■□□□□ 0.38
SHKBP1-218ENST00000598907 FASTKD5Q7L8L6 764 aaKnown RBP17.4■□□□□ 0.38
SHKBP1-218ENST00000598907 PRRT2Q7Z6L0 340 aaPredicted RBP17.4■□□□□ 0.38
SHKBP1-218ENST00000598907 CHMP4AQ9BY43 222 aa17.4■□□□□ 0.38
SHKBP1-218ENST00000598907 ZHX2Q9Y6X8 837 aa17.4■□□□□ 0.38
SHKBP1-218ENST00000598907 DOCK3Q8IZD9 2030 aa17.4■□□□□ 0.38
SHKBP1-218ENST00000598907 PRUNE2Q8WUY3 3088 aa17.39■□□□□ 0.38
SHKBP1-218ENST00000598907 LRRC26Q2I0M4 334 aa17.39■□□□□ 0.37
SHKBP1-218ENST00000598907 LMBR1LQ6UX01 489 aa17.39■□□□□ 0.37
SHKBP1-218ENST00000598907 FAM151AQ8WW52 585 aa17.39■□□□□ 0.37
SHKBP1-218ENST00000598907 SSH1Q8WYL5 1049 aa17.39■□□□□ 0.37
SHKBP1-218ENST00000598907 SYMPKQ92797 1274 aaKnown RBP17.39■□□□□ 0.37
SHKBP1-218ENST00000598907 PICK1Q9NRD5 415 aa17.39■□□□□ 0.37
SHKBP1-218ENST00000598907 OGDHLQ9ULD0 1010 aa17.39■□□□□ 0.37
SHKBP1-218ENST00000598907 LAMA2P24043 3122 aaKnown RBP17.39■□□□□ 0.37
SHKBP1-218ENST00000598907 DOCK2Q92608 1830 aa17.38■□□□□ 0.37
SHKBP1-218ENST00000598907 PLA2G5P39877 138 aa17.38■□□□□ 0.37
SHKBP1-218ENST00000598907 UBE4AQ14139 1066 aa17.38■□□□□ 0.37
SHKBP1-218ENST00000598907 EPHA10Q5JZY3 1008 aa17.38■□□□□ 0.37
SHKBP1-218ENST00000598907 TBC1D22AQ8WUA7 517 aa17.38■□□□□ 0.37
SHKBP1-218ENST00000598907 LBHD1Q9BQE6 289 aaPredicted RBP17.38■□□□□ 0.37
SHKBP1-218ENST00000598907 PTPRFP10586 1907 aa17.38■□□□□ 0.37
SHKBP1-218ENST00000598907 TMEM265A0A087WTH1 108 aa17.37■□□□□ 0.37
SHKBP1-218ENST00000598907 TRIM75PA6NK02 468 aa17.37■□□□□ 0.37
SHKBP1-218ENST00000598907 FOSL2P15408 326 aa17.37■□□□□ 0.37
SHKBP1-218ENST00000598907 FKBP5Q13451 457 aaPredicted RBP17.37■□□□□ 0.37
SHKBP1-218ENST00000598907 MRPL50Q8N5N7 158 aaKnown RBP17.37■□□□□ 0.37
SHKBP1-218ENST00000598907 LINS1Q8NG48 757 aa17.37■□□□□ 0.37
SHKBP1-218ENST00000598907 DNAAF4Q8WXU2 420 aa17.37■□□□□ 0.37
SHKBP1-218ENST00000598907 TNFRSF10AO00220 468 aa17.36■□□□□ 0.37
SHKBP1-218ENST00000598907 BCAR3O75815 825 aa17.36■□□□□ 0.37
SHKBP1-218ENST00000598907 NFIAQ12857 509 aa17.36■□□□□ 0.37
SHKBP1-218ENST00000598907 SCYL3Q8IZE3 742 aa17.36■□□□□ 0.37
SHKBP1-218ENST00000598907 TRIB2Q92519 343 aa17.36■□□□□ 0.37
SHKBP1-218ENST00000598907 FAM122AQ96E09 287 aa17.36■□□□□ 0.37
SHKBP1-218ENST00000598907 PUS3Q9BZE2 481 aaKnown RBP17.36■□□□□ 0.37
SHKBP1-218ENST00000598907 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.36■□□□□ 0.37
SHKBP1-218ENST00000598907 MAST3O60307 1309 aa17.36■□□□□ 0.37
SHKBP1-218ENST00000598907 MAST2Q6P0Q8 1798 aa17.35■□□□□ 0.37
SHKBP1-218ENST00000598907 SLC4A2P04920 1241 aa17.35■□□□□ 0.37
SHKBP1-218ENST00000598907 PRKAR2AP13861 404 aaKnown RBP17.35■□□□□ 0.37
SHKBP1-218ENST00000598907 FLIIQ13045 1269 aa17.35■□□□□ 0.37
SHKBP1-218ENST00000598907 FAM110CQ1W6H9 321 aa17.35■□□□□ 0.37
SHKBP1-218ENST00000598907 CCDC84Q86UT8 332 aaPredicted RBP17.35■□□□□ 0.37
SHKBP1-218ENST00000598907 SLC45A1Q9Y2W3 748 aa17.35■□□□□ 0.37
SHKBP1-218ENST00000598907 DOCK1Q14185 1865 aa17.35■□□□□ 0.37
SHKBP1-218ENST00000598907 COL6A1P12109 1028 aa17.34■□□□□ 0.37
SHKBP1-218ENST00000598907 PTPRAP18433 802 aa17.34■□□□□ 0.37
SHKBP1-218ENST00000598907 TREML2Q5T2D2 321 aa17.34■□□□□ 0.37
SHKBP1-218ENST00000598907 SEMA6BQ9H3T3 888 aa17.34■□□□□ 0.37
SHKBP1-218ENST00000598907 AFG3L2Q9Y4W6 797 aa17.34■□□□□ 0.37
SHKBP1-218ENST00000598907 CYP2B6P20813 491 aa17.33■□□□□ 0.36
SHKBP1-218ENST00000598907 FBXO33Q7Z6M2 555 aa17.33■□□□□ 0.36
SHKBP1-218ENST00000598907 SMC4Q9NTJ3 1288 aa17.33■□□□□ 0.36
SHKBP1-218ENST00000598907 AGTPBP1Q9UPW5 1226 aa17.33■□□□□ 0.36
SHKBP1-218ENST00000598907 PLXNB2O15031 1838 aa17.33■□□□□ 0.36
SHKBP1-218ENST00000598907 DIXDC1Q155Q3 683 aa17.32■□□□□ 0.36
SHKBP1-218ENST00000598907 CAVIN4Q5BKX8 364 aa17.32■□□□□ 0.36
SHKBP1-218ENST00000598907 TJAP1Q5JTD0 557 aa17.32■□□□□ 0.36
SHKBP1-218ENST00000598907 CDC42EP5Q6NZY7 148 aa17.32■□□□□ 0.36
SHKBP1-218ENST00000598907 HHIPL2Q6UWX4 724 aa17.32■□□□□ 0.36
SHKBP1-218ENST00000598907 ZFPM1Q8IX07 1006 aa17.32■□□□□ 0.36
SHKBP1-218ENST00000598907 TTYH1Q9H313 450 aaPredicted RBP17.32■□□□□ 0.36
SHKBP1-218ENST00000598907 PNMA3Q9UL41 463 aa17.32■□□□□ 0.36
SHKBP1-218ENST00000598907 DAGLAQ9Y4D2 1042 aa17.32■□□□□ 0.36
SHKBP1-218ENST00000598907 LTBP2Q14767 1821 aa17.32■□□□□ 0.36
SHKBP1-218ENST00000598907 PHIPQ8WWQ0 1821 aa17.32■□□□□ 0.36
SHKBP1-218ENST00000598907 CDH23Q9H251 3354 aa17.31■□□□□ 0.36
SHKBP1-218ENST00000598907 ATRNL1Q5VV63 1379 aa17.31■□□□□ 0.36
SHKBP1-218ENST00000598907 SLURP2P0DP57 97 aa17.31■□□□□ 0.36
SHKBP1-218ENST00000598907 FAM198AQ9UFP1 575 aa17.31■□□□□ 0.36
SHKBP1-218ENST00000598907 GJD2Q9UKL4 321 aa17.31■□□□□ 0.36
SHKBP1-218ENST00000598907 LRRFIP2Q9Y608 721 aaKnown RBP17.31■□□□□ 0.36
SHKBP1-218ENST00000598907 MUC3AQ02505 3323 aa17.31■□□□□ 0.36
SHKBP1-218ENST00000598907 MYH13Q9UKX3 1938 aa17.31■□□□□ 0.36
SHKBP1-218ENST00000598907 PHF20L1A8MW92 1017 aa17.3■□□□□ 0.36
SHKBP1-218ENST00000598907 C9orf50Q5SZB4 431 aa17.3■□□□□ 0.36
SHKBP1-218ENST00000598907 USP38Q8NB14 1042 aa17.3■□□□□ 0.36
SHKBP1-218ENST00000598907 MRIQ9BWK5 157 aa17.3■□□□□ 0.36
SHKBP1-218ENST00000598907 SUPT16HQ9Y5B9 1047 aaKnown RBP17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms