RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ANKRD1Q15327 319 aa18.06■□□□□ 0.48
TRIM28-209ENST00000597423 AKNAD1Q5T1N1 836 aa18.06■□□□□ 0.48
TRIM28-209ENST00000597423 CTR9Q6PD62 1173 aa18.06■□□□□ 0.48
TRIM28-209ENST00000597423 TTC6Q86TZ1 520 aa18.06■□□□□ 0.48
TRIM28-209ENST00000597423 IPO9Q96P70 1041 aaKnown RBP18.06■□□□□ 0.48
TRIM28-209ENST00000597423 KRT23Q9C075 422 aa18.06■□□□□ 0.48
TRIM28-209ENST00000597423 PDRG1Q9NUG6 133 aa18.06■□□□□ 0.48
TRIM28-209ENST00000597423 GMPSP49915 693 aaPredicted RBP18.05■□□□□ 0.48
TRIM28-209ENST00000597423 ZNF280AP59817 542 aaPredicted RBP18.05■□□□□ 0.48
TRIM28-209ENST00000597423 PDE4BQ07343 736 aa18.05■□□□□ 0.48
TRIM28-209ENST00000597423 C9orf131Q5VYM1 1079 aa18.05■□□□□ 0.48
TRIM28-209ENST00000597423 DPY19L2Q6NUT2 758 aa18.05■□□□□ 0.48
TRIM28-209ENST00000597423 DHX32Q7L7V1 743 aaKnown RBP18.05■□□□□ 0.48
TRIM28-209ENST00000597423 MAPKAPK5Q8IW41 473 aa18.05■□□□□ 0.48
TRIM28-209ENST00000597423 CNOT7Q9UIV1 285 aaKnown RBP18.05■□□□□ 0.48
TRIM28-209ENST00000597423 COL4A5P29400 1685 aa18.05■□□□□ 0.48
TRIM28-209ENST00000597423 SPDYE2BA6NHP3 402 aa18.04■□□□□ 0.48
TRIM28-209ENST00000597423 SPDYE6P0CI01 402 aa18.04■□□□□ 0.48
TRIM28-209ENST00000597423 RPS6KB1P23443 525 aa18.04■□□□□ 0.48
TRIM28-209ENST00000597423 MCM5P33992 734 aa18.04■□□□□ 0.48
TRIM28-209ENST00000597423 FGD1P98174 961 aa18.04■□□□□ 0.48
TRIM28-209ENST00000597423 ADCK5Q3MIX3 580 aa18.04■□□□□ 0.48
TRIM28-209ENST00000597423 C12orf60Q5U649 245 aa18.04■□□□□ 0.48
TRIM28-209ENST00000597423 STAG1Q8WVM7 1258 aa18.04■□□□□ 0.48
TRIM28-209ENST00000597423 PRMT6Q96LA8 375 aaPredicted RBP18.04■□□□□ 0.48
TRIM28-209ENST00000597423 IDI2Q9BXS1 227 aa18.04■□□□□ 0.48
TRIM28-209ENST00000597423 UPF3BQ9BZI7 483 aaKnown RBP18.04■□□□□ 0.48
TRIM28-209ENST00000597423 ALDH8A1Q9H2A2 487 aaPredicted RBP18.04■□□□□ 0.48
TRIM28-209ENST00000597423 MYOZ2Q9NPC6 264 aa18.04■□□□□ 0.48
TRIM28-209ENST00000597423 MKRN1Q9UHC7 482 aaKnown RBP18.04■□□□□ 0.48
TRIM28-209ENST00000597423 TAOK2Q9UL54 1235 aa18.04■□□□□ 0.48
TRIM28-209ENST00000597423 FLT1P17948 1338 aa18.03■□□□□ 0.48
TRIM28-209ENST00000597423 ZC3H4Q9UPT8 1303 aaKnown RBP18.03■□□□□ 0.48
TRIM28-209ENST00000597423 DHX36Q9H2U1 1008 aaKnown RBP18.03■□□□□ 0.48
TRIM28-209ENST00000597423 SCN9AQ15858 1988 aa18.02■□□□□ 0.48
TRIM28-209ENST00000597423 MYH2Q9UKX2 1941 aa18.02■□□□□ 0.48
TRIM28-209ENST00000597423 ENTPD3O75355 529 aa18.02■□□□□ 0.48
TRIM28-209ENST00000597423 WDHD1O75717 1129 aaPredicted RBP18.02■□□□□ 0.48
TRIM28-209ENST00000597423 HLA-DOAP06340 250 aa18.02■□□□□ 0.48
TRIM28-209ENST00000597423 LMOD1P29536 600 aaPredicted RBP18.02■□□□□ 0.48
TRIM28-209ENST00000597423 CTDSPL2Q05D32 466 aa18.02■□□□□ 0.48
TRIM28-209ENST00000597423 PICALMQ13492 652 aa18.02■□□□□ 0.48
TRIM28-209ENST00000597423 FKBP1CQ5VVH2 108 aa18.02■□□□□ 0.48
TRIM28-209ENST00000597423 MICALL2Q8IY33 904 aa18.02■□□□□ 0.48
TRIM28-209ENST00000597423 TDRD3Q9H7E2 651 aaKnown RBP18.02■□□□□ 0.48
TRIM28-209ENST00000597423 TOMM22Q9NS69 142 aa18.02■□□□□ 0.48
TRIM28-209ENST00000597423 WDR19Q8NEZ3 1342 aa18.01■□□□□ 0.47
TRIM28-209ENST00000597423 ZNF541Q9H0D2 1346 aa18.01■□□□□ 0.47
TRIM28-209ENST00000597423 ESR2Q92731 530 aa18.01■□□□□ 0.47
TRIM28-209ENST00000597423 MKNK2Q9HBH9 465 aa18.01■□□□□ 0.47
TRIM28-209ENST00000597423 SAP30BPQ9UHR5 308 aaKnown RBP18.01■□□□□ 0.47
TRIM28-209ENST00000597423 TNNI2P48788 182 aa18■□□□□ 0.47
TRIM28-209ENST00000597423 SART3Q15020 963 aaKnown RBP18■□□□□ 0.47
TRIM28-209ENST00000597423 STOX1Q6ZVD7 989 aa18■□□□□ 0.47
TRIM28-209ENST00000597423 TBC1D10CQ8IV04 446 aa18■□□□□ 0.47
TRIM28-209ENST00000597423 ZNF444Q8N0Y2 327 aaPredicted RBP18■□□□□ 0.47
TRIM28-209ENST00000597423 CHMP4CQ96CF2 233 aa18■□□□□ 0.47
TRIM28-209ENST00000597423 ZSCAN31Q96LW9 406 aaPredicted RBP18■□□□□ 0.47
TRIM28-209ENST00000597423 MTA3Q9BTC8 594 aa18■□□□□ 0.47
TRIM28-209ENST00000597423 TBC1D2Q9BYX2 928 aa18■□□□□ 0.47
TRIM28-209ENST00000597423 OSBPL5Q9H0X9 879 aaPredicted RBP18■□□□□ 0.47
TRIM28-209ENST00000597423 GPRC5DQ9NZD1 345 aa18■□□□□ 0.47
TRIM28-209ENST00000597423 ZNF70Q9UC06 446 aaPredicted RBP18■□□□□ 0.47
TRIM28-209ENST00000597423 LIMCH1Q9UPQ0 1083 aa18■□□□□ 0.47
TRIM28-209ENST00000597423 TAF6LQ9Y6J9 622 aa18■□□□□ 0.47
TRIM28-209ENST00000597423 K7ELQ4 463 aaPredicted RBP17.99■□□□□ 0.47
TRIM28-209ENST00000597423 ORC4O43929 436 aa17.99■□□□□ 0.47
TRIM28-209ENST00000597423 FGRP09769 529 aa17.99■□□□□ 0.47
TRIM28-209ENST00000597423 EXOSC10Q01780 885 aaKnown RBP17.99■□□□□ 0.47
TRIM28-209ENST00000597423 SPDYE2Q495Y8 402 aa17.99■□□□□ 0.47
TRIM28-209ENST00000597423 RRP12Q5JTH9 1297 aaKnown RBP17.99■□□□□ 0.47
TRIM28-209ENST00000597423 RBM26Q5T8P6 1007 aaKnown RBP17.99■□□□□ 0.47
TRIM28-209ENST00000597423 FOXP4Q8IVH2 680 aaPredicted RBP17.99■□□□□ 0.47
TRIM28-209ENST00000597423 ZSCAN29Q8IWY8 852 aaPredicted RBP17.99■□□□□ 0.47
TRIM28-209ENST00000597423 TTC14Q96N46 770 aa17.99■□□□□ 0.47
TRIM28-209ENST00000597423 PI4KBQ9UBF8 816 aa17.99■□□□□ 0.47
TRIM28-209ENST00000597423 PSME4Q14997 1843 aa17.98■□□□□ 0.47
TRIM28-209ENST00000597423 CYP2D7A0A087X1C5 515 aa17.98■□□□□ 0.47
TRIM28-209ENST00000597423 ERICH2A1L162 156 aa17.98■□□□□ 0.47
TRIM28-209ENST00000597423 PRC1O43663 620 aa17.98■□□□□ 0.47
TRIM28-209ENST00000597423 TNFAIP1Q13829 316 aa17.98■□□□□ 0.47
TRIM28-209ENST00000597423 CCDC178Q5BJE1 867 aa17.98■□□□□ 0.47
TRIM28-209ENST00000597423 TMTC2Q8N394 836 aa17.98■□□□□ 0.47
TRIM28-209ENST00000597423 FBXL16Q8N461 479 aa17.98■□□□□ 0.47
TRIM28-209ENST00000597423 ZBED3Q96IU2 234 aaPredicted RBP17.98■□□□□ 0.47
TRIM28-209ENST00000597423 TMEM87BQ96K49 555 aa17.98■□□□□ 0.47
TRIM28-209ENST00000597423 TRIM34Q9BYJ4 488 aa17.98■□□□□ 0.47
TRIM28-209ENST00000597423 NBPF3Q9H094 633 aa17.98■□□□□ 0.47
TRIM28-209ENST00000597423 SWAP70Q9UH65 585 aa17.98■□□□□ 0.47
TRIM28-209ENST00000597423 PCDHAC2Q9Y5I4 1007 aa17.98■□□□□ 0.47
TRIM28-209ENST00000597423 B4E1Z4 1266 aa17.97■□□□□ 0.47
TRIM28-209ENST00000597423 WNT10BO00744 389 aa17.97■□□□□ 0.47
TRIM28-209ENST00000597423 RANBP6O60518 1105 aaKnown RBP17.97■□□□□ 0.47
TRIM28-209ENST00000597423 HSP90AA1P07900 732 aaKnown RBP17.97■□□□□ 0.47
TRIM28-209ENST00000597423 CYP2D6P10635 497 aa17.97■□□□□ 0.47
TRIM28-209ENST00000597423 CPA1P15085 419 aa17.97■□□□□ 0.47
TRIM28-209ENST00000597423 AK2P54819 239 aa17.97■□□□□ 0.47
TRIM28-209ENST00000597423 TCP10Q12799 353 aa17.97■□□□□ 0.47
TRIM28-209ENST00000597423 KIF4BQ2VIQ3 1234 aa17.97■□□□□ 0.47
TRIM28-209ENST00000597423 Q6ZUG5 572 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms