RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 NOL10Q9BSC4 688 aaKnown RBP18.68■□□□□ 0.58
TRIM28-203ENST00000593582 RFX7Q2KHR2 1363 aa18.68■□□□□ 0.58
TRIM28-203ENST00000593582 IGSF3O75054 1194 aa18.67■□□□□ 0.58
TRIM28-203ENST00000593582 ZAP70P43403 619 aa18.67■□□□□ 0.58
TRIM28-203ENST00000593582 RHBDL3P58872 404 aa18.67■□□□□ 0.58
TRIM28-203ENST00000593582 CLASRPQ8N2M8 674 aaKnown RBP18.67■□□□□ 0.58
TRIM28-203ENST00000593582 KIF1BPQ96EK5 621 aa18.67■□□□□ 0.58
TRIM28-203ENST00000593582 MS4A4AQ96JQ5 239 aa18.67■□□□□ 0.58
TRIM28-203ENST00000593582 IL1RAPL2Q9NP60 686 aa18.67■□□□□ 0.58
TRIM28-203ENST00000593582 ZNF112Q9UJU3 913 aa18.67■□□□□ 0.58
TRIM28-203ENST00000593582 CCL15-CCL14A0A0B4J2E2 113 aa18.66■□□□□ 0.58
TRIM28-203ENST00000593582 APBB1O00213 710 aa18.66■□□□□ 0.58
TRIM28-203ENST00000593582 NPM3O75607 178 aaKnown RBP18.66■□□□□ 0.58
TRIM28-203ENST00000593582 BAG3O95817 575 aa18.66■□□□□ 0.58
TRIM28-203ENST00000593582 INPP5BP32019 993 aa18.66■□□□□ 0.58
TRIM28-203ENST00000593582 CCL15Q16663 113 aa18.66■□□□□ 0.58
TRIM28-203ENST00000593582 CTU1Q7Z7A3 348 aaKnown RBP18.66■□□□□ 0.58
TRIM28-203ENST00000593582 PTPN18Q99952 460 aa18.66■□□□□ 0.58
TRIM28-203ENST00000593582 DDX4Q9NQI0 724 aaKnown RBP18.66■□□□□ 0.58
TRIM28-203ENST00000593582 FKTNO75072 461 aa18.65■□□□□ 0.58
TRIM28-203ENST00000593582 RAB11FIP3O75154 756 aa18.65■□□□□ 0.58
TRIM28-203ENST00000593582 PPIL2Q13356 520 aa18.65■□□□□ 0.58
TRIM28-203ENST00000593582 SNAPC2Q13487 334 aa18.65■□□□□ 0.58
TRIM28-203ENST00000593582 R3HDMLQ9H3Y0 253 aa18.65■□□□□ 0.58
TRIM28-203ENST00000593582 DDTLA6NHG4 134 aaPredicted RBP18.64■□□□□ 0.57
TRIM28-203ENST00000593582 IRF6O14896 467 aa18.64■□□□□ 0.57
TRIM28-203ENST00000593582 CETPP11597 493 aa18.64■□□□□ 0.57
TRIM28-203ENST00000593582 PLCG2P16885 1265 aa18.64■□□□□ 0.57
TRIM28-203ENST00000593582 PPATQ06203 517 aa18.64■□□□□ 0.57
TRIM28-203ENST00000593582 SH3BP5LQ7L8J4 393 aa18.64■□□□□ 0.57
TRIM28-203ENST00000593582 TEX11Q8IYF3 940 aa18.64■□□□□ 0.57
TRIM28-203ENST00000593582 BRI3BPQ8WY22 251 aa18.64■□□□□ 0.57
TRIM28-203ENST00000593582 PIH1D3Q9NQM4 214 aaKnown RBP18.64■□□□□ 0.57
TRIM28-203ENST00000593582 AATFQ9NY61 560 aaKnown RBP eCLIP18.64■□□□□ 0.575e-7■■□□□ 12.6
TRIM28-203ENST00000593582 ATRNL1Q5VV63 1379 aa18.64■□□□□ 0.57
TRIM28-203ENST00000593582 CCDC85CA6NKD9 419 aa18.63■□□□□ 0.57
TRIM28-203ENST00000593582 IDH1O75874 414 aaKnown RBP18.63■□□□□ 0.57
TRIM28-203ENST00000593582 IFIT2P09913 472 aaKnown RBP18.63■□□□□ 0.57
TRIM28-203ENST00000593582 CRHR2Q13324 411 aa18.63■□□□□ 0.57
TRIM28-203ENST00000593582 NOL9Q5SY16 702 aaKnown RBP18.63■□□□□ 0.57
TRIM28-203ENST00000593582 BCL11AQ9H165 835 aa18.63■□□□□ 0.57
TRIM28-203ENST00000593582 LAMB1P07942 1786 aa18.63■□□□□ 0.57
TRIM28-203ENST00000593582 AK9Q5TCS8 1911 aa18.62■□□□□ 0.57
TRIM28-203ENST00000593582 PPP4CP60510 307 aa18.62■□□□□ 0.57
TRIM28-203ENST00000593582 MAP3K10Q02779 954 aa18.62■□□□□ 0.57
TRIM28-203ENST00000593582 PKN2Q16513 984 aaKnown RBP18.62■□□□□ 0.57
TRIM28-203ENST00000593582 SH3RF3Q8TEJ3 882 aaPredicted RBP18.62■□□□□ 0.57
TRIM28-203ENST00000593582 PICK1Q9NRD5 415 aa18.62■□□□□ 0.57
TRIM28-203ENST00000593582 PHF20L1A8MW92 1017 aa18.61■□□□□ 0.57
TRIM28-203ENST00000593582 MAP3K12Q12852 859 aa18.61■□□□□ 0.57
TRIM28-203ENST00000593582 YTHDC1Q96MU7 727 aaKnown RBP18.61■□□□□ 0.57
TRIM28-203ENST00000593582 OSBPL5Q9H0X9 879 aaPredicted RBP18.61■□□□□ 0.57
TRIM28-203ENST00000593582 NDUFB9Q9Y6M9 179 aa18.61■□□□□ 0.57
TRIM28-203ENST00000593582 TBC1D12O60347 775 aa18.6■□□□□ 0.57
TRIM28-203ENST00000593582 CYP7A1P22680 504 aa18.6■□□□□ 0.57
TRIM28-203ENST00000593582 TMED8Q6PL24 325 aaPredicted RBP18.6■□□□□ 0.57
TRIM28-203ENST00000593582 ADGRA1Q86SQ6 560 aa18.6■□□□□ 0.57
TRIM28-203ENST00000593582 SCYL3Q8IZE3 742 aa18.6■□□□□ 0.57
TRIM28-203ENST00000593582 FAM43AQ8N2R8 423 aa18.6■□□□□ 0.57
TRIM28-203ENST00000593582 ZFYVE28Q9HCC9 887 aa18.6■□□□□ 0.57
TRIM28-203ENST00000593582 MAST2Q6P0Q8 1798 aa18.6■□□□□ 0.57
TRIM28-203ENST00000593582 COL2A1P02458 1487 aaPredicted RBP18.59■□□□□ 0.57
TRIM28-203ENST00000593582 DOCK2Q92608 1830 aa18.59■□□□□ 0.57
TRIM28-203ENST00000593582 CTNND1O60716 968 aaKnown RBP18.59■□□□□ 0.57
TRIM28-203ENST00000593582 TTF1Q15361 905 aaPredicted RBP18.59■□□□□ 0.57
TRIM28-203ENST00000593582 TAF1CQ15572 869 aaPredicted RBP18.59■□□□□ 0.57
TRIM28-203ENST00000593582 CERS3Q8IU89 383 aa18.59■□□□□ 0.57
TRIM28-203ENST00000593582 MAGEB6Q8N7X4 407 aa18.59■□□□□ 0.57
TRIM28-203ENST00000593582 ANTXR1Q9H6X2 564 aa18.59■□□□□ 0.57
TRIM28-203ENST00000593582 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.59■□□□□ 0.57
TRIM28-203ENST00000593582 ZCCHC17Q9NP64 241 aaKnown RBP18.59■□□□□ 0.57
TRIM28-203ENST00000593582 KCNH4Q9UQ05 1017 aa18.59■□□□□ 0.57
TRIM28-203ENST00000593582 BTBD19C9JJ37 291 aa18.58■□□□□ 0.56
TRIM28-203ENST00000593582 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.58■□□□□ 0.56
TRIM28-203ENST00000593582 TGFBRAP1Q8WUH2 860 aa18.58■□□□□ 0.56
TRIM28-203ENST00000593582 LRRCC1Q9C099 1032 aa18.58■□□□□ 0.56
TRIM28-203ENST00000593582 DHX36Q9H2U1 1008 aaKnown RBP18.58■□□□□ 0.56
TRIM28-203ENST00000593582 ZHX2Q9Y6X8 837 aa18.58■□□□□ 0.56
TRIM28-203ENST00000593582 CXCL11O14625 94 aa18.57■□□□□ 0.56
TRIM28-203ENST00000593582 SLURP2P0DP57 97 aa18.57■□□□□ 0.56
TRIM28-203ENST00000593582 PTPRAP18433 802 aa18.57■□□□□ 0.56
TRIM28-203ENST00000593582 SP3Q02447 781 aa18.57■□□□□ 0.56
TRIM28-203ENST00000593582 ERO1AQ96HE7 468 aa18.57■□□□□ 0.56
TRIM28-203ENST00000593582 PI4KBQ9UBF8 816 aa18.57■□□□□ 0.56
TRIM28-203ENST00000593582 FLT1P17948 1338 aa18.56■□□□□ 0.56
TRIM28-203ENST00000593582 RRP1P56182 461 aaKnown RBP18.56■□□□□ 0.56
TRIM28-203ENST00000593582 MAPKAPK5Q8IW41 473 aa18.56■□□□□ 0.56
TRIM28-203ENST00000593582 MIGA1Q8NAN2 632 aa18.56■□□□□ 0.56
TRIM28-203ENST00000593582 DNAJC2Q99543 621 aaKnown RBP18.56■□□□□ 0.56
TRIM28-203ENST00000593582 HERC5Q9UII4 1024 aaKnown RBP18.56■□□□□ 0.56
TRIM28-203ENST00000593582 FAM196BA6NMK8 535 aa18.55■□□□□ 0.56
TRIM28-203ENST00000593582 GOLIM4O00461 696 aa18.55■□□□□ 0.56
TRIM28-203ENST00000593582 DYNLL1P63167 89 aaKnown RBP18.55■□□□□ 0.56
TRIM28-203ENST00000593582 FBXO46Q6PJ61 603 aaPredicted RBP18.55■□□□□ 0.56
TRIM28-203ENST00000593582 ANKRD23Q86SG2 305 aa18.55■□□□□ 0.56
TRIM28-203ENST00000593582 HPS5Q9UPZ3 1129 aa18.55■□□□□ 0.56
TRIM28-203ENST00000593582 TRIM17Q9Y577 477 aa18.55■□□□□ 0.56
TRIM28-203ENST00000593582 TLR2O60603 784 aa18.54■□□□□ 0.56
TRIM28-203ENST00000593582 ATP5JP18859 108 aa18.54■□□□□ 0.56
TRIM28-203ENST00000593582 SLC9C2Q5TAH2 1124 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms