RNA–Protein interactions for RNA: ENST00000592017.5

CLIP3-205, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 5

Gene CLIP3, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-205ENST00000592017 SH3BP5LQ7L8J4 393 aa17.02■□□□□ 0.32
CLIP3-205ENST00000592017 SLF2Q8IX21 1173 aa17.02■□□□□ 0.32
CLIP3-205ENST00000592017 ZNF112Q9UJU3 913 aa17.02■□□□□ 0.32
CLIP3-205ENST00000592017 MROH7-TTC4A0A0A0MT08 1334 aa17.01■□□□□ 0.31
CLIP3-205ENST00000592017 GPR75-ASB3A0A0A6YYF3 556 aa17.01■□□□□ 0.31
CLIP3-205ENST00000592017 ENTPD3O75355 529 aa17.01■□□□□ 0.31
CLIP3-205ENST00000592017 RHBDL3P58872 404 aa17.01■□□□□ 0.31
CLIP3-205ENST00000592017 CRHR2Q13324 411 aa17.01■□□□□ 0.31
CLIP3-205ENST00000592017 ERO1BQ86YB8 467 aa17.01■□□□□ 0.31
CLIP3-205ENST00000592017 NSUN4Q96CB9 384 aaKnown RBP17.01■□□□□ 0.31
CLIP3-205ENST00000592017 DDX4Q9NQI0 724 aaKnown RBP17.01■□□□□ 0.31
CLIP3-205ENST00000592017 PCDHB15Q9Y5E8 787 aa17.01■□□□□ 0.31
CLIP3-205ENST00000592017 RFX7Q2KHR2 1363 aa17.01■□□□□ 0.31
CLIP3-205ENST00000592017 AKAP11Q9UKA4 1901 aa17■□□□□ 0.31
CLIP3-205ENST00000592017 CCL15-CCL14A0A0B4J2E2 113 aa17■□□□□ 0.31
CLIP3-205ENST00000592017 SMARCA5O60264 1052 aaPredicted RBP17■□□□□ 0.31
CLIP3-205ENST00000592017 CYP2E1P05181 493 aaPredicted RBP17■□□□□ 0.31
CLIP3-205ENST00000592017 GTF2A2P52657 109 aa17■□□□□ 0.31
CLIP3-205ENST00000592017 CCL15Q16663 113 aa17■□□□□ 0.31
CLIP3-205ENST00000592017 OTUD7BQ6GQQ9 843 aa17■□□□□ 0.31
CLIP3-205ENST00000592017 ZNF512BQ96KM6 892 aaPredicted RBP17■□□□□ 0.31
CLIP3-205ENST00000592017 LRRCC1Q9C099 1032 aa17■□□□□ 0.31
CLIP3-205ENST00000592017 NDUFB9Q9Y6M9 179 aa17■□□□□ 0.31
CLIP3-205ENST00000592017 ATRNL1Q5VV63 1379 aa17■□□□□ 0.31
CLIP3-205ENST00000592017 IRF6O14896 467 aa16.99■□□□□ 0.31
CLIP3-205ENST00000592017 SLURP2P0DP57 97 aa16.99■□□□□ 0.31
CLIP3-205ENST00000592017 GSTO1P78417 241 aa16.99■□□□□ 0.31
CLIP3-205ENST00000592017 PIH1D3Q9NQM4 214 aaKnown RBP16.99■□□□□ 0.31
CLIP3-205ENST00000592017 SUPT16HQ9Y5B9 1047 aaKnown RBP16.99■□□□□ 0.31
CLIP3-205ENST00000592017 DDTLA6NHG4 134 aaPredicted RBP16.98■□□□□ 0.31
CLIP3-205ENST00000592017 PHF20L1A8MW92 1017 aa16.98■□□□□ 0.31
CLIP3-205ENST00000592017 LDHCP07864 332 aa16.98■□□□□ 0.31
CLIP3-205ENST00000592017 PPIL2Q13356 520 aa16.98■□□□□ 0.31
CLIP3-205ENST00000592017 FAM43AQ8N2R8 423 aa16.98■□□□□ 0.31
CLIP3-205ENST00000592017 IDH1O75874 414 aaKnown RBP16.97■□□□□ 0.31
CLIP3-205ENST00000592017 RGS19P49795 217 aa16.97■□□□□ 0.31
CLIP3-205ENST00000592017 MAP3K10Q02779 954 aa16.97■□□□□ 0.31
CLIP3-205ENST00000592017 PPATQ06203 517 aa16.97■□□□□ 0.31
CLIP3-205ENST00000592017 PICALMQ13492 652 aa16.97■□□□□ 0.31
CLIP3-205ENST00000592017 PKN2Q16513 984 aaKnown RBP16.97■□□□□ 0.31
CLIP3-205ENST00000592017 NAA16Q6N069 864 aaPredicted RBP16.97■□□□□ 0.31
CLIP3-205ENST00000592017 DNAJC2Q99543 621 aaKnown RBP16.97■□□□□ 0.31
CLIP3-205ENST00000592017 NOL10Q9BSC4 688 aaKnown RBP16.97■□□□□ 0.31
CLIP3-205ENST00000592017 DCTPP1Q9H773 170 aa16.97■□□□□ 0.31
CLIP3-205ENST00000592017 HPS5Q9UPZ3 1129 aa16.97■□□□□ 0.31
CLIP3-205ENST00000592017 CETPP11597 493 aa16.96■□□□□ 0.31
CLIP3-205ENST00000592017 CAP1Q01518 475 aa16.96■□□□□ 0.31
CLIP3-205ENST00000592017 SNAPC2Q13487 334 aa16.96■□□□□ 0.31
CLIP3-205ENST00000592017 NOL9Q5SY16 702 aaKnown RBP16.96■□□□□ 0.31
CLIP3-205ENST00000592017 ZSCAN29Q8IWY8 852 aaPredicted RBP16.96■□□□□ 0.31
CLIP3-205ENST00000592017 ANTXR1Q9H6X2 564 aa16.96■□□□□ 0.31
CLIP3-205ENST00000592017 OTOFQ9HC10 1997 aa16.95■□□□□ 0.3
CLIP3-205ENST00000592017 BTBD19C9JJ37 291 aa16.95■□□□□ 0.3
CLIP3-205ENST00000592017 NPM3O75607 178 aaKnown RBP16.95■□□□□ 0.3
CLIP3-205ENST00000592017 MAST2Q6P0Q8 1798 aa16.94■□□□□ 0.3
CLIP3-205ENST00000592017 MAP4K4O95819 1239 aaPredicted RBP16.94■□□□□ 0.3
CLIP3-205ENST00000592017 TAF1CQ15572 869 aaPredicted RBP16.94■□□□□ 0.3
CLIP3-205ENST00000592017 FBXO46Q6PJ61 603 aaPredicted RBP16.94■□□□□ 0.3
CLIP3-205ENST00000592017 ADGRA1Q86SQ6 560 aa16.94■□□□□ 0.3
CLIP3-205ENST00000592017 EXOC6Q8TAG9 804 aa16.94■□□□□ 0.3
CLIP3-205ENST00000592017 CD99L2Q8TCZ2 262 aa16.94■□□□□ 0.3
CLIP3-205ENST00000592017 SH3RF3Q8TEJ3 882 aaPredicted RBP16.94■□□□□ 0.3
CLIP3-205ENST00000592017 ZFYVE28Q9HCC9 887 aa16.94■□□□□ 0.3
CLIP3-205ENST00000592017 AATFQ9NY61 560 aaKnown RBP eCLIP16.94■□□□□ 0.3
CLIP3-205ENST00000592017 KCNH4Q9UQ05 1017 aa16.94■□□□□ 0.3
CLIP3-205ENST00000592017 GOLIM4O00461 696 aa16.93■□□□□ 0.3
CLIP3-205ENST00000592017 CYP7A1P22680 504 aa16.93■□□□□ 0.3
CLIP3-205ENST00000592017 SOX10P56693 466 aa16.93■□□□□ 0.3
CLIP3-205ENST00000592017 PPP4CP60510 307 aa16.93■□□□□ 0.3
CLIP3-205ENST00000592017 SP3Q02447 781 aa16.93■□□□□ 0.3
CLIP3-205ENST00000592017 MOGSQ13724 837 aa16.93■□□□□ 0.3
CLIP3-205ENST00000592017 OTOP1Q7RTM1 612 aa16.93■□□□□ 0.3
CLIP3-205ENST00000592017 TEX11Q8IYF3 940 aa16.93■□□□□ 0.3
CLIP3-205ENST00000592017 BOLA2Q9H3K6 86 aa16.93■□□□□ 0.3
CLIP3-205ENST00000592017 TRIM17Q9Y577 477 aa16.93■□□□□ 0.3
CLIP3-205ENST00000592017 MYH2Q9UKX2 1941 aa16.93■□□□□ 0.3
CLIP3-205ENST00000592017 IRX6P78412 446 aaPredicted RBP16.92■□□□□ 0.3
CLIP3-205ENST00000592017 MAP3K12Q12852 859 aa16.92■□□□□ 0.3
CLIP3-205ENST00000592017 TTF1Q15361 905 aaPredicted RBP16.92■□□□□ 0.3
CLIP3-205ENST00000592017 SCYL3Q8IZE3 742 aa16.92■□□□□ 0.3
CLIP3-205ENST00000592017 MAGEB6Q8N7X4 407 aa16.92■□□□□ 0.3
CLIP3-205ENST00000592017 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.92■□□□□ 0.3
CLIP3-205ENST00000592017 EDC3Q96F86 508 aaKnown RBP16.92■□□□□ 0.3
CLIP3-205ENST00000592017 ERO1AQ96HE7 468 aa16.92■□□□□ 0.3
CLIP3-205ENST00000592017 OSBPL5Q9H0X9 879 aaPredicted RBP16.92■□□□□ 0.3
CLIP3-205ENST00000592017 ZHX2Q9Y6X8 837 aa16.92■□□□□ 0.3
CLIP3-205ENST00000592017 FAM196BA6NMK8 535 aa16.91■□□□□ 0.3
CLIP3-205ENST00000592017 CXCL11O14625 94 aa16.91■□□□□ 0.3
CLIP3-205ENST00000592017 TBC1D12O60347 775 aa16.91■□□□□ 0.3
CLIP3-205ENST00000592017 BAG3O95817 575 aa16.91■□□□□ 0.3
CLIP3-205ENST00000592017 PTPRAP18433 802 aa16.91■□□□□ 0.3
CLIP3-205ENST00000592017 MIGA1Q8NAN2 632 aa16.91■□□□□ 0.3
CLIP3-205ENST00000592017 GPATCH3Q96I76 525 aa16.91■□□□□ 0.3
CLIP3-205ENST00000592017 ZCCHC17Q9NP64 241 aaKnown RBP16.91■□□□□ 0.3
CLIP3-205ENST00000592017 ZBTB47Q9UFB7 747 aaPredicted RBP16.91■□□□□ 0.3
CLIP3-205ENST00000592017 TLR2O60603 784 aa16.9■□□□□ 0.3
CLIP3-205ENST00000592017 CTNND1O60716 968 aaKnown RBP16.9■□□□□ 0.3
CLIP3-205ENST00000592017 ATP5JP18859 108 aa16.9■□□□□ 0.3
CLIP3-205ENST00000592017 RRP1BQ14684 758 aaKnown RBP16.9■□□□□ 0.3
CLIP3-205ENST00000592017 TSHZ3Q63HK5 1081 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms