RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 RALYLQ86SE5 291 aaKnown RBP26.37■■□□□ 1.81
ATG4D-209ENST00000588857 NCOA7Q8NI08 942 aa26.37■■□□□ 1.81
ATG4D-209ENST00000588857 TGFBRAP1Q8WUH2 860 aa26.37■■□□□ 1.81
ATG4D-209ENST00000588857 ZDHHC15Q96MV8 337 aa26.37■■□□□ 1.81
ATG4D-209ENST00000588857 RHBDL3P58872 404 aa26.37■■□□□ 1.81
ATG4D-209ENST00000588857 DHX32Q7L7V1 743 aaKnown RBP26.37■■□□□ 1.81
ATG4D-209ENST00000588857 TBC1D10CQ8IV04 446 aa26.37■■□□□ 1.81
ATG4D-209ENST00000588857 RRAGCQ9HB90 399 aa26.37■■□□□ 1.81
ATG4D-209ENST00000588857 ARPP21Q9UBL0 812 aaPredicted RBP26.37■■□□□ 1.81
ATG4D-209ENST00000588857 DICER1Q9UPY3 1922 aaKnown RBP26.36■■□□□ 1.81
ATG4D-209ENST00000588857 MYH1P12882 1939 aa26.36■■□□□ 1.81
ATG4D-209ENST00000588857 USP17L12C9JPN9 530 aa26.36■■□□□ 1.81
ATG4D-209ENST00000588857 USP17L21D6R901 530 aa26.36■■□□□ 1.81
ATG4D-209ENST00000588857 AK2P54819 239 aa26.36■■□□□ 1.81
ATG4D-209ENST00000588857 CTDSPL2Q05D32 466 aa26.36■■□□□ 1.81
ATG4D-209ENST00000588857 CTR9Q6PD62 1173 aa26.36■■□□□ 1.81
ATG4D-209ENST00000588857 AMOTL1Q8IY63 956 aa26.36■■□□□ 1.81
ATG4D-209ENST00000588857 MCM9Q9NXL9 1143 aa26.36■■□□□ 1.81
ATG4D-209ENST00000588857 AKNAD1Q5T1N1 836 aa26.35■■□□□ 1.81
ATG4D-209ENST00000588857 AGBL3Q8NEM8 1001 aa26.35■■□□□ 1.81
ATG4D-209ENST00000588857 RNF41Q9H4P4 317 aaPredicted RBP26.35■■□□□ 1.81
ATG4D-209ENST00000588857 USP40Q9NVE5 1235 aa26.35■■□□□ 1.81
ATG4D-209ENST00000588857 ANAPC4Q9UJX5 808 aa26.35■■□□□ 1.81
ATG4D-209ENST00000588857 HDAC9Q9UKV0 1011 aa26.35■■□□□ 1.81
ATG4D-209ENST00000588857 ANKRD1Q15327 319 aa26.34■■□□□ 1.81
ATG4D-209ENST00000588857 SBK1Q52WX2 424 aa26.34■■□□□ 1.81
ATG4D-209ENST00000588857 MFSD6Q6ZSS7 791 aa26.34■■□□□ 1.81
ATG4D-209ENST00000588857 NOL8Q76FK4 1167 aaKnown RBP26.34■■□□□ 1.81
ATG4D-209ENST00000588857 MAPKAPK5Q8IW41 473 aa26.34■■□□□ 1.81
ATG4D-209ENST00000588857 OGFOD1Q8N543 542 aa26.34■■□□□ 1.81
ATG4D-209ENST00000588857 GMLQ99445 158 aa26.34■■□□□ 1.81
ATG4D-209ENST00000588857 ALDH8A1Q9H2A2 487 aaPredicted RBP26.34■■□□□ 1.81
ATG4D-209ENST00000588857 CNNM2Q9H8M5 875 aa26.34■■□□□ 1.81
ATG4D-209ENST00000588857 MKRN1Q9UHC7 482 aaKnown RBP26.34■■□□□ 1.81
ATG4D-209ENST00000588857 HSP90AA1P07900 732 aaKnown RBP26.33■■□□□ 1.81
ATG4D-209ENST00000588857 EIF6P56537 245 aaKnown RBP26.33■■□□□ 1.81
ATG4D-209ENST00000588857 COL9A3Q14050 684 aaPredicted RBP26.33■■□□□ 1.81
ATG4D-209ENST00000588857 APOBEC3HQ6NTF7 200 aaKnown RBP26.33■■□□□ 1.81
ATG4D-209ENST00000588857 TCEANC2Q96MN5 208 aa26.33■■□□□ 1.81
ATG4D-209ENST00000588857 SLC3A2P08195 630 aaKnown RBP26.33■■□□□ 1.8
ATG4D-209ENST00000588857 FGD1P98174 961 aa26.33■■□□□ 1.8
ATG4D-209ENST00000588857 CDC42EP5Q6NZY7 148 aa26.33■■□□□ 1.8
ATG4D-209ENST00000588857 STAG1Q8WVM7 1258 aa26.33■■□□□ 1.8
ATG4D-209ENST00000588857 ZBTB12Q9Y330 459 aaPredicted RBP26.33■■□□□ 1.8
ATG4D-209ENST00000588857 MCM5P33992 734 aa26.32■■□□□ 1.8
ATG4D-209ENST00000588857 KRT23Q9C075 422 aa26.32■■□□□ 1.8
ATG4D-209ENST00000588857 LIMCH1Q9UPQ0 1083 aa26.32■■□□□ 1.8
ATG4D-209ENST00000588857 FLT1P17948 1338 aa26.31■■□□□ 1.8
ATG4D-209ENST00000588857 CYP2D7A0A087X1C5 515 aa26.31■■□□□ 1.8
ATG4D-209ENST00000588857 TOMM70O94826 608 aa26.31■■□□□ 1.8
ATG4D-209ENST00000588857 USP17L8P0C7I0 530 aa26.31■■□□□ 1.8
ATG4D-209ENST00000588857 EXOSC10Q01780 885 aaKnown RBP26.31■■□□□ 1.8
ATG4D-209ENST00000588857 CFAP100Q494V2 611 aa26.31■■□□□ 1.8
ATG4D-209ENST00000588857 MB21D2Q8IYB1 491 aaPredicted RBP26.31■■□□□ 1.8
ATG4D-209ENST00000588857 FZD9O00144 591 aa26.3■■□□□ 1.8
ATG4D-209ENST00000588857 Q6ZUG5 572 aa26.3■■□□□ 1.8
ATG4D-209ENST00000588857 STK11IPQ8N1F8 1099 aa26.3■■□□□ 1.8
ATG4D-209ENST00000588857 TMX3Q96JJ7 454 aa26.3■■□□□ 1.8
ATG4D-209ENST00000588857 TOMM22Q9NS69 142 aa26.3■■□□□ 1.8
ATG4D-209ENST00000588857 NEDD4P46934 1319 aa26.3■■□□□ 1.8
ATG4D-209ENST00000588857 DDNO94850 711 aaPredicted RBP26.29■■□□□ 1.8
ATG4D-209ENST00000588857 POLR3DP05423 398 aaPredicted RBP26.29■■□□□ 1.8
ATG4D-209ENST00000588857 PCP11498 1178 aaKnown RBP26.29■■□□□ 1.8
ATG4D-209ENST00000588857 VEGFAP15692 232 aaPredicted RBP26.29■■□□□ 1.8
ATG4D-209ENST00000588857 SPRYD3Q8NCJ5 442 aa26.29■■□□□ 1.8
ATG4D-209ENST00000588857 SAP30BPQ9UHR5 308 aaKnown RBP26.29■■□□□ 1.8
ATG4D-209ENST00000588857 DDX60LQ5H9U9 1706 aaKnown RBP26.29■■□□□ 1.8
ATG4D-209ENST00000588857 WDR19Q8NEZ3 1342 aa26.29■■□□□ 1.8
ATG4D-209ENST00000588857 B4E1Z4 1266 aa26.29■■□□□ 1.8
ATG4D-209ENST00000588857 PRC1O43663 620 aa26.29■■□□□ 1.8
ATG4D-209ENST00000588857 CYP2D6P10635 497 aa26.29■■□□□ 1.8
ATG4D-209ENST00000588857 RPS12P25398 132 aaKnown RBP26.29■■□□□ 1.8
ATG4D-209ENST00000588857 PICALMQ13492 652 aa26.29■■□□□ 1.8
ATG4D-209ENST00000588857 C12orf60Q5U649 245 aa26.29■■□□□ 1.8
ATG4D-209ENST00000588857 INCENPQ9NQS7 918 aa26.29■■□□□ 1.8
ATG4D-209ENST00000588857 PCDHAC2Q9Y5I4 1007 aa26.29■■□□□ 1.8
ATG4D-209ENST00000588857 POTECB2RU33 542 aa26.28■■□□□ 1.8
ATG4D-209ENST00000588857 WDHD1O75717 1129 aaPredicted RBP26.28■■□□□ 1.8
ATG4D-209ENST00000588857 MMP14P50281 582 aa26.28■■□□□ 1.8
ATG4D-209ENST00000588857 DLGAP5Q15398 846 aa26.28■■□□□ 1.8
ATG4D-209ENST00000588857 RRP12Q5JTH9 1297 aaKnown RBP26.28■■□□□ 1.8
ATG4D-209ENST00000588857 CHST3Q7LGC8 479 aa26.28■■□□□ 1.8
ATG4D-209ENST00000588857 ZSCAN31Q96LW9 406 aaPredicted RBP26.28■■□□□ 1.8
ATG4D-209ENST00000588857 LARP6Q9BRS8 491 aaKnown RBP26.28■■□□□ 1.8
ATG4D-209ENST00000588857 TOB2Q14106 344 aaPredicted RBP26.27■■□□□ 1.8
ATG4D-209ENST00000588857 LRRC2Q9BYS8 371 aa26.27■■□□□ 1.8
ATG4D-209ENST00000588857 PDE4BQ07343 736 aa26.26■■□□□ 1.79
ATG4D-209ENST00000588857 SLC4A8Q2Y0W8 1093 aa26.26■■□□□ 1.79
ATG4D-209ENST00000588857 TACC3Q9Y6A5 838 aa26.26■■□□□ 1.79
ATG4D-209ENST00000588857 GJA3Q9Y6H8 435 aa26.26■■□□□ 1.79
ATG4D-209ENST00000588857 KDM4AO75164 1064 aa26.25■■□□□ 1.79
ATG4D-209ENST00000588857 ESR2Q92731 530 aa26.25■■□□□ 1.79
ATG4D-209ENST00000588857 PRMT6Q96LA8 375 aaPredicted RBP26.25■■□□□ 1.79
ATG4D-209ENST00000588857 ZNF541Q9H0D2 1346 aa26.25■■□□□ 1.79
ATG4D-209ENST00000588857 SMIM22K7EJ46 135 aa26.24■■□□□ 1.79
ATG4D-209ENST00000588857 CYB5R4Q7L1T6 521 aa26.24■■□□□ 1.79
ATG4D-209ENST00000588857 BRF1Q92994 677 aa26.24■■□□□ 1.79
ATG4D-209ENST00000588857 DDX4Q9NQI0 724 aaKnown RBP26.24■■□□□ 1.79
ATG4D-209ENST00000588857 SH2B1Q9NRF2 756 aaPredicted RBP26.24■■□□□ 1.79
ATG4D-209ENST00000588857 SPDYE2BA6NHP3 402 aa26.24■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms