RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 PPP1R26Q5T8A7 1209 aaPredicted RBP6.55□□□□□ -1.36
LIG3-210ENST00000588109 DDX46Q7L014 1031 aaKnown RBP6.55□□□□□ -1.36
LIG3-210ENST00000588109 TTLL11Q8NHH1 800 aa6.55□□□□□ -1.36
LIG3-210ENST00000588109 SSH3Q8TE77 659 aa6.55□□□□□ -1.36
LIG3-210ENST00000588109 RPGRQ92834 1020 aaKnown RBP6.55□□□□□ -1.36
LIG3-210ENST00000588109 GCC1Q96CN9 775 aa6.55□□□□□ -1.36
LIG3-210ENST00000588109 ITPKCQ96DU7 683 aa6.55□□□□□ -1.36
LIG3-210ENST00000588109 SIL1Q9H173 461 aa6.55□□□□□ -1.36
LIG3-210ENST00000588109 GREM2Q9H772 168 aa6.55□□□□□ -1.36
LIG3-210ENST00000588109 DCTPP1Q9H773 170 aa6.55□□□□□ -1.36
LIG3-210ENST00000588109 CEP126Q9P2H0 1117 aa6.55□□□□□ -1.36
LIG3-210ENST00000588109 EXOC6BQ9Y2D4 811 aa6.55□□□□□ -1.36
LIG3-210ENST00000588109 TNRC6CQ9HCJ0 1690 aaKnown RBP6.55□□□□□ -1.36
LIG3-210ENST00000588109 KDM2BQ8NHM5 1336 aa6.54□□□□□ -1.36
LIG3-210ENST00000588109 RIC1Q4ADV7 1423 aa6.54□□□□□ -1.36
LIG3-210ENST00000588109 TIMP2P16035 220 aa6.54□□□□□ -1.36
LIG3-210ENST00000588109 PDE6BP35913 854 aa6.54□□□□□ -1.36
LIG3-210ENST00000588109 IGHMBP2P38935 993 aaKnown RBP6.54□□□□□ -1.36
LIG3-210ENST00000588109 SF3B3Q15393 1217 aaKnown RBP6.54□□□□□ -1.36
LIG3-210ENST00000588109 ANKRD45Q5TZF3 282 aa6.54□□□□□ -1.36
LIG3-210ENST00000588109 ERC1Q8IUD2 1116 aa6.54□□□□□ -1.36
LIG3-210ENST00000588109 KLHDC4Q8TBB5 520 aa6.54□□□□□ -1.36
LIG3-210ENST00000588109 ZNF594Q96JF6 807 aaPredicted RBP6.54□□□□□ -1.36
LIG3-210ENST00000588109 CDC5LQ99459 802 aaKnown RBP6.54□□□□□ -1.36
LIG3-210ENST00000588109 MPHOSPH8Q99549 860 aa6.54□□□□□ -1.36
LIG3-210ENST00000588109 BRIP1Q9BX63 1249 aa6.54□□□□□ -1.36
LIG3-210ENST00000588109 ZFAND3Q9H8U3 227 aa6.54□□□□□ -1.36
LIG3-210ENST00000588109 COPRSQ9NQ92 184 aa6.54□□□□□ -1.36
LIG3-210ENST00000588109 CNNM1Q9NRU3 951 aa6.54□□□□□ -1.36
LIG3-210ENST00000588109 PA2G4Q9UQ80 394 aaKnown RBP6.54□□□□□ -1.36
LIG3-210ENST00000588109 NRXN2Q9P2S2 1712 aa6.53□□□□□ -1.36
LIG3-210ENST00000588109 ESPNB1AK53 854 aa6.53□□□□□ -1.36
LIG3-210ENST00000588109 H0YIN7 160 aa6.53□□□□□ -1.36
LIG3-210ENST00000588109 ERVH48-1M5A8F1 160 aa6.53□□□□□ -1.36
LIG3-210ENST00000588109 RAB11FIP3O75154 756 aa6.53□□□□□ -1.36
LIG3-210ENST00000588109 RFX5P48382 616 aaPredicted RBP6.53□□□□□ -1.36
LIG3-210ENST00000588109 PTPN12Q05209 780 aaKnown RBP6.53□□□□□ -1.36
LIG3-210ENST00000588109 LDHAL6AQ6ZMR3 332 aa6.53□□□□□ -1.36
LIG3-210ENST00000588109 ANKRD18AQ8IVF6 992 aa6.53□□□□□ -1.36
LIG3-210ENST00000588109 SMC5Q8IY18 1101 aa6.53□□□□□ -1.36
LIG3-210ENST00000588109 KIF1BPQ96EK5 621 aa6.53□□□□□ -1.36
LIG3-210ENST00000588109 RBM17Q96I25 401 aaKnown RBP6.53□□□□□ -1.36
LIG3-210ENST00000588109 LRRCC1Q9C099 1032 aa6.53□□□□□ -1.36
LIG3-210ENST00000588109 SENP2Q9HC62 589 aa6.53□□□□□ -1.36
LIG3-210ENST00000588109 SEC31BQ9NQW1 1179 aa6.53□□□□□ -1.36
LIG3-210ENST00000588109 PPP1R1BQ9UD71 204 aaPredicted RBP6.53□□□□□ -1.36
LIG3-210ENST00000588109 RTL9Q8NET4 1388 aa6.53□□□□□ -1.36
LIG3-210ENST00000588109 A6NJR5 290 aa6.52□□□□□ -1.37
LIG3-210ENST00000588109 EYA2O00167 538 aa6.52□□□□□ -1.37
LIG3-210ENST00000588109 CIAO1O76071 339 aa6.52□□□□□ -1.37
LIG3-210ENST00000588109 IL15P40933 162 aaPredicted RBP6.52□□□□□ -1.37
LIG3-210ENST00000588109 ZNF787Q6DD87 383 aa6.52□□□□□ -1.37
LIG3-210ENST00000588109 C2CD5Q86YS7 1000 aa6.52□□□□□ -1.37
LIG3-210ENST00000588109 RNF135Q8IUD6 432 aa6.52□□□□□ -1.37
LIG3-210ENST00000588109 ZNF622Q969S3 477 aaKnown RBP eCLIP6.52□□□□□ -1.37
LIG3-210ENST00000588109 LNPKQ9C0E8 428 aa6.52□□□□□ -1.37
LIG3-210ENST00000588109 SPON1Q9HCB6 807 aa6.52□□□□□ -1.37
LIG3-210ENST00000588109 ATP13A2Q9NQ11 1180 aa6.52□□□□□ -1.37
LIG3-210ENST00000588109 TMPRSS4Q9NRS4 437 aa6.52□□□□□ -1.37
LIG3-210ENST00000588109 NOP58Q9Y2X3 529 aaKnown RBP6.52□□□□□ -1.37
LIG3-210ENST00000588109 PCDHB11Q9Y5F2 797 aa6.52□□□□□ -1.37
LIG3-210ENST00000588109 SPEF2Q9C093 1822 aa6.52□□□□□ -1.37
LIG3-210ENST00000588109 ANKRD31Q8N7Z5 1873 aa6.51□□□□□ -1.37
LIG3-210ENST00000588109 C10orf71Q711Q0 1435 aa6.51□□□□□ -1.37
LIG3-210ENST00000588109 SMARCA5O60264 1052 aaPredicted RBP6.51□□□□□ -1.37
LIG3-210ENST00000588109 SRGNP10124 158 aa6.51□□□□□ -1.37
LIG3-210ENST00000588109 NPR1P16066 1061 aa6.51□□□□□ -1.37
LIG3-210ENST00000588109 CHRNA5P30532 468 aa6.51□□□□□ -1.37
LIG3-210ENST00000588109 ALDH1B1P30837 517 aa6.51□□□□□ -1.37
LIG3-210ENST00000588109 RPS8P62241 208 aaKnown RBP6.51□□□□□ -1.37
LIG3-210ENST00000588109 NUCB1Q02818 461 aa6.51□□□□□ -1.37
LIG3-210ENST00000588109 TFCP2Q12800 502 aa6.51□□□□□ -1.37
LIG3-210ENST00000588109 GRAPQ13588 217 aa6.51□□□□□ -1.37
LIG3-210ENST00000588109 CRY2Q49AN0 593 aa6.51□□□□□ -1.37
LIG3-210ENST00000588109 LRRC24Q50LG9 513 aa6.51□□□□□ -1.37
LIG3-210ENST00000588109 METTL24Q5JXM2 366 aa6.51□□□□□ -1.37
LIG3-210ENST00000588109 CHD1LQ86WJ1 897 aa6.51□□□□□ -1.37
LIG3-210ENST00000588109 CLASRPQ8N2M8 674 aaKnown RBP6.51□□□□□ -1.37
LIG3-210ENST00000588109 GRAPLQ8TC17 118 aaPredicted RBP6.51□□□□□ -1.37
LIG3-210ENST00000588109 RHPN1Q8TCX5 695 aa6.51□□□□□ -1.37
LIG3-210ENST00000588109 CELF1Q92879 486 aaKnown RBP6.51□□□□□ -1.37
LIG3-210ENST00000588109 MASTLQ96GX5 879 aa6.51□□□□□ -1.37
LIG3-210ENST00000588109 TSEN34Q9BSV6 310 aaKnown RBP6.51□□□□□ -1.37
LIG3-210ENST00000588109 KLF16Q9BXK1 252 aaPredicted RBP6.51□□□□□ -1.37
LIG3-210ENST00000588109 PUS3Q9BZE2 481 aaKnown RBP6.51□□□□□ -1.37
LIG3-210ENST00000588109 TMX4Q9H1E5 349 aaPredicted RBP6.51□□□□□ -1.37
LIG3-210ENST00000588109 IL1RAPL2Q9NP60 686 aa6.51□□□□□ -1.37
LIG3-210ENST00000588109 MROH5Q6ZUA9 1318 aa6.5□□□□□ -1.37
LIG3-210ENST00000588109 LRP5O75197 1615 aa6.5□□□□□ -1.37
LIG3-210ENST00000588109 KLRG2A4D1S0 409 aaPredicted RBP6.5□□□□□ -1.37
LIG3-210ENST00000588109 BBOX1O75936 387 aa6.5□□□□□ -1.37
LIG3-210ENST00000588109 SASH1O94885 1247 aa6.5□□□□□ -1.37
LIG3-210ENST00000588109 MYCP01106 439 aaPredicted RBP6.5□□□□□ -1.37
LIG3-210ENST00000588109 IFIT2P09913 472 aaKnown RBP6.5□□□□□ -1.37
LIG3-210ENST00000588109 BMP2P12643 396 aa6.5□□□□□ -1.37
LIG3-210ENST00000588109 HOXA10P31260 410 aaPredicted RBP6.5□□□□□ -1.37
LIG3-210ENST00000588109 KCNJ4P48050 445 aa6.5□□□□□ -1.37
LIG3-210ENST00000588109 RGS3P49796 1198 aa6.5□□□□□ -1.37
LIG3-210ENST00000588109 C6orf118Q5T5N4 469 aa6.5□□□□□ -1.37
LIG3-210ENST00000588109 STYK1Q6J9G0 422 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms